After the destruction of the Hindu Vijayanagara Empire in the late 16th century by a coalition of Islamic Deccan sultanates north of Karnataka, the Madurai region declared its sovereignty. Visvanatha Nayak then poured resources to heavily fortify the temple complex, set a new plan for the temple complex. The Nayaka ruler also gilded the vimana of the primary shrines with gold. Chettiappa Nayakkar rebuilt the Dvarapala mandapam in front of the Sannadhi gopuram, as well as the north colonnade of the Golden Lotus Tank, the second protective wall around the Meenakshi Devi's shrine.
