On 28 January 2020, Jacobsen terminated his contract with OB and joined SønderjyskE on a one and a half-year deal.SønderjyskE henter AK og Eskesen i OB – Lieder til Fyn omgående, soenderjyske.dk, 28 January 2020 In the 2020 Danish Cup Final he scored both goals against his former club AaB as SønderjyskE won 2–0.
