It is recognized that both the position and the type of substitution on an aromatic moiety of the SSRI compounds are important for the higher specificity to SERT. Halogen substituents on the aromatic ring are found to be largely responsible for SSRIs specificity to SERT, but all SSRIs possess at specific positions halogen atoms (table 2). For the SERT protein, however, the structural basis of its specificity for SSRIs is poorly understood. Research has shown that the SSRI halogens all bind to exactly the same halogen-binding pocket (HBP) within the SERT protein and mutation at this HBP in SERT dramatically reduces the transporters affinity for SSRIs.
