Aliso Creek forms a narrow tidal lagoon just above its mouth at Aliso Beach. The lagoon originally covered a large area at the outlet of Aliso Canyon, dammed by a sandbar that only breached during the rainy season. Due to development of the golf course and parking lots at the mouth of the creek, the lagoon has been significantly reduced from its original size. The increased freshwater inflow caused by urban runoff has further disrupted the hydrologic regime of the lagoon, which occasionally breaches causing large surge flows into the Pacific Ocean before the sandbar re-forms.
