_handle(),
<a name="l00392"></a>00392                             A_model-&gt;interacting_atoms(), &amp;(*align));
<a name="l00393"></a>00393       <span class="keywordflow">if</span>(frag_lig_filter &amp;&amp; !lig_has_enough_atoms) <span class="keywordflow">return</span> <span class="keyword">false</span>;
<a name="l00394"></a>00394     }
<a name="l00395"></a>00395 
<a name="l00396"></a>00396     <span class="comment">// Insert the alignment into the top_aligns, and if we have an extra</span>
<a name="l00