
<p>See the documentation for <code><a href="Canonicalize1Del.html">Canonicalize1Del</a></code> which first handles
deletions in homopolymers, then handles deletions in simple repeats with
longer repeat units, (e.g. <code>CACACACA</code>, see
<code><a href="FindMaxRepeatDel.html">FindMaxRepeatDel</a></code>), and if the deletion is not in a simple
repeat, looks for microhomology (see <code><a href="FindDelMH.html">FindDelMH</a></code>).</p>
<p>See the code for unexported function <code><a href="Canonicalize