<span class='kw'>debug</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)</div><div class='output co'>#&gt; <span class='message'>vep --cache_version 91 --assembly GRCh37 --dir /cluster/home/ljf/.vep --output_file variant_effect_output.txt --cache --offline --everything </span></div><div class='output co'>#&gt; [1] "vep --cache_version 91 --assembly GRCh37 --dir /cluster/home/ljf/.vep --output_file variant_effect_output.txt --cache --offline --everything "</div></pre>
  </div>
  <div class="col-