ode" href="classSimSite3D_1_1ScoreRigidAlignments.html#14c7215836a55728fa4225078b31cad7">A_write_ligands</a>;
<a name="l00803"></a>00803     <span class="keywordtype">bool</span> A_fine_tune_tier2_alignments;
<a name="l00804"></a>00804     <span class="keywordtype">bool</span> A_fine_tune_best_tier2_alignment;
<a name="l00805"></a>00805     <span class="keywordtype">bool</span> A_do_IK;
<a name="l00806"></a>00806 
<a name="l00807"></a>00807     <span class="comment">// for testing and messing around</span>
