rdtype">void</span>
<a name="l00511"></a><a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#ec86b7fcea8af70b5b4e7cb7dc87383a">00511</a>   <a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#ec86b7fcea8af70b5b4e7cb7dc87383a">report_alignments</a>(<span class="keyword">const</span> tier2_score_mmap top_aligns, <span class="keyword">const</span> <span class="keywordtype">bool</span> wrote_ligs,
<a name="l00512"></a>00512                     <span class="keyword">const</span> std::s