n class='kw'>phy</span> <span class='kw'>=</span> <span class='no'>mphy</span>, <span class='kw'>data</span> <span class='kw'>=</span> <span class='no'>dat</span>,
                               <span class='kw'>n.tree</span> <span class='kw'>=</span> <span class='fl'>2</span>, <span class='kw'>n.sim</span> <span class='kw'>=</span> <span class='fl'>1</span>, <span class='kw'>clade.col</span> <span class='kw'>=</span> <span class='st'>"cla"</span>)</div><div class='output co'>#&gt; <span class='message'>Use