t'>"variant_effect_output.txt"</span>,
  <span class='kw'>fasta</span> <span class='kw'>=</span> <span class='st'>""</span>,
  <span class='kw'>everything</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>,
  <span class='kw'>extra.params</span> <span class='kw'>=</span> <span class='st'>""</span>,
  <span class='kw'>debug</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>
)</pre>

    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
    <tab