otein_ligand_interactions</a>(tier2_score_mmap *top_aligns)
<a name="l00466"></a>00466   {
<a name="l00467"></a>00467     <span class="comment">// Protein-ligand scoring </span>
<a name="l00468"></a>00468     tier2_score_mmi align;
<a name="l00469"></a>00469     <span class="keywordflow">for</span>(align = top_aligns-&gt;begin(); align != top_aligns-&gt;end(); ++align){
<a name="l00470"></a>00470       <span class="keywordflow">if</span>(!align-&gt;second-&gt;frag_file) <span class="keywordflow">continue</s