pan class="keywordflow">if</span>(top_aligns-&gt;size() &amp;&amp; A_fine_tune_best_tier2_alignment)
<a name="l00338"></a>00338       <a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#1d8b66d8f4810212f8f8187c061d74f0">refine_best_alignment</a>(&amp;A_tier2_score_class, top_aligns, dset_site, 
<a name="l00339"></a>00339                             lig_file, db_struct_id, db_mol_id, 
<a name="l00340"></a>00340                             rigid_results_out);
<a name="l00341"></a>00341     <span