          <a class="code" href="classSimSite3D_1_1mol2File.html">mol2File</a> *lig_file, tier1_score_mmap *top_aligns)
<a name="l00263"></a>00263   {
<a name="l00264"></a>00264     <span class="keywordflow">if</span>(aligns_in.empty()) <span class="keywordflow">return</span> <span class="keyword">false</span>;
<a name="l00265"></a>00265     <span class="keywordflow">if</span>(<a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#f68d236f77307b8d5e4eed409aa573ce">A_min_num_atoms</a> &gt; 0 &amp;&