p; lig_file, 
<a name="l00732"></a>00732                         <span class="keyword">const</span> <a class="code" href="classSimSite3D_1_1BoundingVolume.html">BoundingVolume</a> &amp;site_vol, 
<a name="l00733"></a>00733                         <span class="keyword">const</span> <a class="code" href="classSimSite3D_1_1CoordFile.html">CoordFile</a>&amp; interacting_atoms, 
<a name="l00734"></a>00734                         <a class="code" href="classSimSite3D_1_1rigid__align__t.html">rigid_align_t</a> *ali