  data/NoveltyTables/
    Untracked:  data/PCAWG/
    Untracked:  data/Plasma_CV_meta_HiSeq.csv
    Untracked:  data/Plasma_CV_meta_Novaseq.csv
    Untracked:  data/Simulation/
    Untracked:  data/Supp_Tables/
    Untracked:  data/TCGA/
    Untracked:  data/cfDNA_manifest_HiSeq.txt
    Untracked:  data/focal_pcawg/
    Untracked:  data/lucas_nova_artemis.csv
    Untracked:  data/process_pcawg/

Unstaged changes:
    Modified:   README.md
    Modified:   analysis/about.Rmd
    Modified:   analysis/index.Rmd