annotation.html#cb706-4" tabindex="-1"></a><span class="va">FIRSTDIR</span><span class="op">=</span><span class="va">$(</span><span class="fu">dirname</span> <span class="va">$(</span><span class="fu">dirname</span> <span class="va">$(</span><span class="fu">which</span> snpEff<span class="va">)))</span></span>
<span id="cb706-5"><a href="variant-annotation.html#cb706-5" tabindex="-1"></a><span class="co"># get the directory of the value of the alias</span></span>
<span id="cb706-6"><a href="variant-annotat