'>"Ex.h5"</span><span class='op'>)</span>
<span class='va'>pbmc</span> <span class='op'>&lt;-</span> <span class='fu'><a href='https://satijalab.org/seurat/reference/CreateSeuratObject.html'>CreateSeuratObject</a></span><span class='op'>(</span>counts <span class='op'>=</span> <span class='va'>E</span>, project <span class='op'>=</span> <span class='st'>"pbmc"</span><span class='op'>)</span>

<span class='co'># run Seurat pipeline</span>
<span class='va'>pbmc</span> <span class='op'>&lt;-</span> <span class