on data look like
(i.e. in a GFF file) and how to associate it with SNP data (i.e. using snpEff).</p>
<p>The GFF format is a distinctly hierarchical format, but it is still tabular,
it is not in XML, thank god! ’cuz it is much easier to parse in tabular format.</p>
<p>You can fiddle it with bedtools.</p>
<p>Here is an idea for a fun thing for me to do: Take a big chunk of chinook GFF
(and maybe a few other species), and then figure out who the parents are of each of the
rows, and then make a graph (with