ple, we loaded default settings for the interactions between chromosomes and chromosomes, and chromosomes and nuclear landmarks. All the types of potential can be found in “Section: Energy function of the whole nucleus model” in Supporting Information. According to the order of added potential, the index of speckle-speckle potential is 6, and this index is needed when transiting the speckle particle between type 6 and type 7.</p>
<p>Because during the simulations, we would transit the dP speckle and P s