l" class="external-link">phyloseq-class</a></code> object obtained
using the <code>phyloseq</code> package.</p></dd>


<dt id="arg-fact">fact<a class="anchor" aria-label="anchor" href="#arg-fact"></a></dt>
<dd><p>(required) Name of the factor in <code>physeq@sam_data</code> used to plot
different lines</p></dd>


<dt id="arg-nb-seq">nb_seq<a class="anchor" aria-label="anchor" href="#arg-nb-seq"></a></dt>
<dd><p>(logical; default TRUE) If set to FALSE, only the number of ASV
is count. Concretely, physeq <cod