lass="keywordflow">for</span>(align = aligns_in.begin(); align &lt; aligns_in.end(); ++align){
<a name="l00330"></a>00330       align-&gt;set_number_of_orientations(aligns_in.size());
<a name="l00331"></a>00331       blah(align, &amp;A_tier2_score_class, <a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#f70ab6bb6b22b59758853f0326c8fece">A_tier2_score_cmp</a>, top_aligns, 
<a name="l00332"></a>00332            lig_file, <span class="keyword">true</span>, <a class="code" href="classSimSite3D_1