site,
<a name="l00321"></a>00321                    <a class="code" href="classSimSite3D_1_1mol2File.html">mol2File</a> *lig_file, <span class="keyword">const</span> std::string&amp; db_struct_id,
<a name="l00322"></a>00322                    <span class="keyword">const</span> std::string&amp; db_mol_id, tier2_score_mmap *top_aligns, 
<a name="l00323"></a>00323                    std::ostream&amp; rigid_results_out)
<a name="l00324"></a>00324   {
<a name="l00325"></a>00325     <span class="keywordflow">if</