<li>Spectronaut (v15)</li>
<li>MaxQuant (v2.0.3)</li>
<li>DIA-NN (v1.8)</li>
<li>Proteome Discoverer (v2.4)</li>
</ul>
<div class="section level3">
<h3 id="spectronaut">Spectronaut<a class="anchor" aria-label="anchor" href="#spectronaut"></a>
</h3>
<p>For <strong>flowTraceR</strong> the following columns are required:</p>
<ul>
<li>PG.ProteinGroups (User Manual definition: One or several protein groups)</li>
<li>EG.PrecursorId (User Manual definition: Unique Id for the precursor: [modified sequence] plus [ch