ing</span>
<a name="l00167"></a>00167 <span class="comment">//      std::cout &lt;&lt; "inside \"single tier\" scoring --- num aligns: " </span>
<a name="l00168"></a>00168 <span class="comment">//                &lt;&lt; aligns.size() &lt;&lt; "\n\n";</span>
<a name="l00169"></a>00169       <span class="keywordflow">if</span>(!<a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#e078164dfaa7d414d997fc2274de48f3">score_alignments</a>(aligns, dbase_site, dbase_ligand, dbase_struct_id, 
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