*top_aligns,
<a name="l00347"></a>00347        <a class="code" href="classSimSite3D_1_1mol2File.html">mol2File</a> *lig_file, <span class="keyword">const</span> <span class="keywordtype">bool</span> frag_lig_filter,
<a name="l00348"></a>00348        <span class="keyword">const</span> size_t max_num_aligns, <span class="keyword">const</span> my_float_t score_cutoff,
<a name="l00349"></a>00349        <span class="keyword">const</span> <span class="keywordtype">bool</span> fine_tune_all, <a class="code" href="