 and <code class="docutils literal notranslate"><span class="pre">reference_fc.mha</span></code> to your <code class="docutils literal notranslate"><span class="pre">reference/newsubject</span></code> folder</p></li>
<li><p>You can use a different reference image: copy your new reference image, femur mask, and femoral cartilage mask to the <code class="docutils literal notranslate"><span class="pre">reference/newsubject</span></code> folder, making sure you rename the files as <code class="docutils literal 