f9fd841e8f5a03b2b7b756240bbe82">atoms_file_name</a>(), &amp;chaff, 
<a name="l00106"></a>00106                            &amp;A_model_struct_id);
<a name="l00107"></a>00107     A_model_struct_id = 
<a name="l00108"></a>00108       A_model_struct_id.substr(0, A_model_struct_id.length() - 2);
<a name="l00109"></a>00109     <span class="keywordflow">if</span>(<a class="code" href="classSimSite3D_1_1ScoreMapBase.html#42d2d13e5fa5d7492495dd531246f8a5">A_prot_lig_score</a>){
<a name="l00110"></a>00110       std: