s, <a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#13a5468270fa523e191d1428030fd015">A_tier1_score_cmp</a>, top_aligns, lig_file,
<a name="l00276"></a>00276            <span class="keyword">true</span>, <a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#5412c0788cb1612caa586487861973c1">A_max_tier1_aligns</a>, score_cutoff, <span class="keyword">false</span>, search);
<a name="l00277"></a>00277     }
<a name="l00278"></a>00278     <span class="keywordflow">return</span> <spa