pan class="keywordflow">if</span>(top_tier2_aligns.begin()-&gt;second-&gt;compute_prot_lig_score())
<a name="l00198"></a>00198         <a class="code" href="classSimSite3D_1_1ScoreRigidAlignments.html#4e0ef1c8fe1ed27a93385ec78ca35bf7">score_protein_ligand_interactions</a>(&amp;top_tier2_aligns);
<a name="l00199"></a>00199 
<a name="l00200"></a>00200       <span class="comment">// Write out ligands and reclaim memory</span>
<a name="l00201"></a>00201       <a class="code" href="classSimSite3D_1_1ScoreRigidAl