ell documented, but what we have done above seems to work.</p>
<p>Also, we are currently not checking against files of known coding sequence and protein
sequence, because we don’t have those.</p>
<p>That command takes a few minutes to run, and it has created a series of files
with <code>.bin</code> extensions in the directory <code>resources/SnpEff/data/Pearl_Millet_v1.1</code>. Those
are the “data base” files that snpEff uses to annotate a VCF.</p>
<p><strong>Step 4: Annotate the VCF </strong></p>
<p