erence-genome"><i class="fa fa-check"></i><b>27.2.2</b> Indexing the reference genome</a></li>
</ul></li>
<li class="chapter" data-level="27.3" data-path="example-wgs-flow.html"><a href="example-wgs-flow.html#a-word-on-organizing-workflows"><i class="fa fa-check"></i><b>27.3</b> A word on organizing workflows</a></li>
<li class="chapter" data-level="27.4" data-path="example-wgs-flow.html"><a href="example-wgs-flow.html#step-1a.-quality-checking-the-reads"><i class="fa fa-check"></i><b>27.4</b> Step 1a. Qual