assSimSite3D_1_1rigid__align__t.html#c19150913ee8369262f89abf3dba1839">R</a>, align-&gt;<a class="code" href="classSimSite3D_1_1rigid__align__t.html#c66d5098258a0e0296c47b3d438dfd40">T</a>);
<a name="l00738"></a>00738 
<a name="l00739"></a>00739       <span class="comment">// Check to be sure the ligand fragment has a reasonable number of </span>
<a name="l00740"></a>00740       <span class="comment">// atoms -- NOTE in the case of empty pocket searches we are </span>
<a name="l00741"></a>00741       <span 