class="at">-c</span> bioconda snpeff=5.1</span></code></pre></div>
<p>SnpEff comes loaded with a config file that it automatically reads. When installed
with conda, this location of this config file is not completely transparent, but
we can find it by figuring out where the snpEff command is stored, using the <code>which</code>
command. This command is a symbolic link, itself, so we need to figure out where that
symlink points to, and then find the directory that file lives in. One way to do that
looks like