t</span><span class="p">(</span><span class="n">param</span><span class="p">,</span> <span class="n">r</span><span class="p">[</span><span class="n">param</span><span class="p">],</span> <span class="n">id_</span><span class="p">)</span>
                <span class="p">)</span>

    <span class="n">_write_pymol_commands</span><span class="p">(</span><span class="n">cmds</span><span class="p">,</span> <span class="n">output_file</span><span class="p">)</span>
    <span class="k">return</span> <span class="n"