   tmp += <span class="stringliteral">" score of target ligand fragment in query pocket"</span>;
<a name="l00240"></a>00240         fields.push_back(tmp);
<a name="l00241"></a>00241       }    
<a name="l00242"></a>00242     }
<a name="l00243"></a>00243 
<a name="l00244"></a>00244     <span class="keywordflow">if</span>(A_fine_tune_tier2_alignments){
<a name="l00245"></a>00245       out &lt;&lt; <span class="stringliteral">"# NOTE: the matchprint is NOT valid in the RIGID file\n"</span>;
<a name="l00246"></