the initial </span>
<a name="l00546"></a>00546     <span class="comment">// transformation, score, and features</span>
<a name="l00547"></a>00547     <span class="comment">//align-&gt;site_atomic_rmsd() ....</span>
<a name="l00548"></a>00548     <span class="keywordflow">if</span>(A_do_IK)
<a name="l00549"></a>00549       A_my_IK.<a class="code" href="classSimSite3D_1_1IK__tests.html#5748368e2908160b96bcabb654fdcbe6">compute_initial_atomic_rmsd</a>(A_model, *search, &amp;(*align));
<a name="l00550"></a>0055