tring &amp;db_struct_id, 
<a name="l00513"></a>00513                     <span class="keyword">const</span> std::string &amp;db_mol_id,
<a name="l00514"></a>00514                     std::ostream&amp; results_out)
<a name="l00515"></a>00515   {
<a name="l00516"></a>00516 
<a name="l00517"></a>00517     uint cnt = 1;
<a name="l00518"></a>00518     tier2_score_mmci align;
<a name="l00519"></a>00519     <span class="keywordflow">for</span>(align = top_aligns.begin(); align != top_aligns.end(); ++align, ++cnt){