kCds</span> <span class="at">-noCheckProtein</span> <span class="at">-gff3</span> <span class="at">-c</span> resources/SnpEff/snpEff.config  <span class="at">-v</span> Pearl_Millet_v1.1</span></code></pre></div>
<p>In the above, the <code>-Xmx8g</code> is providing the Java virtual machine with
8 Gb of RAM. It turns out that, by default, snpEff searches for inputs and writes output to a directory
called <code>data</code> that resides in the same directory as the config file that is being used.
This is not w