nces</a></li>
<li class="chapter" data-level="2.1.10" data-path="prepare-msms-identifications-1.html"><a href="prepare-msms-identifications-1.html#remove-decoy-psms-1"><i class="fa fa-check"></i><b>2.1.10</b> Remove Decoy PSMs</a></li>
</ul></li>
<li class="chapter" data-level="2.2" data-path="prepare-reporter-ion-intensities-1.html"><a href="prepare-reporter-ion-intensities-1.html"><i class="fa fa-check"></i><b>2.2</b> Prepare Reporter Ion Intensities</a>
<ul>
<li class="chapter" data-level="2.2.1" data-pa