/dt>
<dd><p>If hetmiss_as = "allele", heterozygous-missing SNPs './N'
are recoded as 'N/N', if hetmiss_as = "miss", the site is recoded as missing.</p></dd>


<dt>metadata</dt>
<dd><p>Metadata input (optional).</p></dd>


<dt>keep_outliers</dt>
<dd><p>When FALSE, marker group smoothing is performed to
remove outliers.</p></dd>

</dl></div>
    <div class="section level2">
    <h2 id="value">Value<a class="anchor" aria-label="anchor" href="#value"></a></h2>
    

<p>A comprehensive haplotyping S3 object (Hap