><a href="api/data.html#torchdrug.data.PackedProtein.graph_mask">(PackedProtein method)</a>
</li>
        </ul></li>
        <li><a href="api/data.html#torchdrug.data.Graph.graph_reference">graph_reference() (Graph method)</a>
</li>
        <li><a href="api/models.html#torchdrug.models.GraphAF">GraphAF (in module torchdrug.models)</a>
</li>
        <li><a href="api/layers.html#torchdrug.layers.GraphAttentionConv">GraphAttentionConv (class in torchdrug.layers)</a>
</li>
        <li><a href="api/models.html#t