tware/gwas/file_format.html">oxford genetics format</a>) is Hapgen2 and an example usage is given below.</p></li>
</ol>
<p>Examples for genotype simulation via PLINK, GENOME and Hapgen2 are given below. The corresponding data can be found in the extdata folder.</p>
<div id="simple-bi-allelic-snps-without-structure-via-plink" class="section level2">
<h2>Simple bi-allelic SNPs without structure via PLINK</h2>
<p>Download <a href="https://www.cog-genomics.org/plink/1.9/">PLINK</a> and create a folder for the P