ode-block" id="alignment_index_mapping"><a class="viewcode-back" href="../../../evcouplings.compare.html#evcouplings.compare.mapping.alignment_index_mapping">[docs]</a><span class="k">def</span> <span class="nf">alignment_index_mapping</span><span class="p">(</span><span class="n">alignment_file</span><span class="p">,</span> <span class="nb">format</span><span class="o">=</span><span class="s2">&quot;stockholm&quot;</span><span class="p">,</span>
                            <span class="n">target_seq</span