uccessful_window_count</td><td>number of passing windows in the region</td><td>int</td></tr>
<tr><td>14</td><td>failed_window_count</td><td>number of failed windows in the region</td><td>int</td></tr>
</tbody></table>
</div>
<h2 id="specifying-motifs-or-primary-sequence-bases"><a class="header" href="#specifying-motifs-or-primary-sequence-bases">Specifying motifs or primary sequence bases</a></h2>
<p>Similar to <code>pileup</code> you can specify a motif on the command line with <code>--motif</code> and opt