t the maximum treedepth</li>
<li>Low E-BFMI values</li>
<li>Low effective sample sizes</li>
<li>High <span class="math inline">\(\hat{R}\)</span> values</li>
</ul>
<p>The meanings of several of these problems are discussed in
<a href="https://arxiv.org/abs/1701.02434" class="uri">https://arxiv.org/abs/1701.02434</a>.</p>
<div id="building-the-diagnose-command" class="section level2" number="17.1">
<h2><span class="header-section-number">17.1</span> Building the diagnose command</h2>
<p>The CmdStan makefile 