tps://github.com/Illumina/strelka">Strelka2</a> This is a small variant caller designed by Illumina. It is used for identifying germline variants in cohorts of samples and somatic variants in tumor/normal sample pairs.
- <a href="https://gmt.genome.wustl.edu/packages/somatic-sniper/">SomaticSniper</a> SomaticSniper can be used to identify SNPs in tumor/normal pairs. It calculates the probability that the tumor and normal genotypes are different and reports this probability as a somatic score.
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