bp">self</span><span class="p">,</span> <span class="n">protein_keys</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">shapemer_keys</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
        <span class="sd">&quot;&quot;&quot;</span>
<span class="sd">        Maps each protein to a list of shapemer indices where the index corresponds to the shapemer in shapemer_keys</span>
<span class="sd">        in order of its residues\n\n<