=""><h1>Cluster SNPs with HDBSCAN and identify haplotypes</h1>
      
      <div class="d-none name"><code>run_hdbscan_haplotyping.Rd</code></div>
    </div>

    <div class="ref-description section level2">
    <p>run_hdbscan_haplotyping() performs HDBSCAN clustering of SNPs in region of
interest to identify marker groups. Individuals are classified by haplotype
combination based on shared combinations of marker group alleles. Returns a
comprehensive haplotyping object (HapObject), which can be visualized 