core must be recalibrated at this step before variants are called. A final BAM file is thus created. This can be used for future analysis steps include variant or mutation identification, which is outlined on the following slide.</p>
</div>
<div id="commonly-used-tools" class="section level2" number="7.7">
<h2><span class="header-section-number">7.7</span> Commonly Used Tools</h2>
<p><img src="resources/images/06a-WGS-and-WXS_files/figure-html/1YwxXy2rnUgbx_7B7ENH9wpDX-j6JpJz6lGVzOkjo0qY_g138a6ce16b7_35_43.