 <span class="n">atom_index</span> <span class="o">+=</span> <span class="mi">1</span>

    <span class="n">file_write</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
</pre></div>
</div>
</div>
</div>
<div class="section" id="Generate-Speckle-and-Nucleolus-beads">
<h2>Generate Speckle and Nucleolus beads<a class="headerlink" href="#Generate-Speckle-and-Nucleolus-beads" title="Permalink to this headline">¶</a></h2>
<p>All the beads are uniformly distributed within the cel