            <span class="n">proteins_to_shapemers</span><span class="o">=</span><span class="n">proteins_to_shapemers</span><span class="p">,</span>
            <span class="n">protein_keys</span><span class="o">=</span><span class="n">protein_keys</span><span class="p">,</span>
            <span class="n">resolution</span><span class="o">=</span><span class="n">resolution</span><span class="p">,</span>
            <span class="n">proteins_to_shapemer_residue_indices</span><span class="o">=</span><span clas