ny types of sequencing data. For pre-processing, the print read function is very beneficial for writing the reads from a BAM or SAM file that pass specific criteria to a new file</p>
</div>
<div id="tools-for-somatic-and-germline-variant-identification" class="section level2" number="7.9">
<h2><span class="header-section-number">7.9</span> Tools for somatic and germline variant identification</h2>
<p>These tools are used to identify either somatic or germline mutations from a sequenced sample. Many research