ce-genome-and-associated-steps.html"><a href="alignment-of-sequence-data-to-a-reference-genome-and-associated-steps.html#mapping-reads-with-bwa-mem"><i class="fa fa-check"></i><b>19.3.2</b> Mapping reads with <code>bwa mem</code></a></li>
<li class="chapter" data-level="19.3.3" data-path="alignment-of-sequence-data-to-a-reference-genome-and-associated-steps.html"><a href="alignment-of-sequence-data-to-a-reference-genome-and-associated-steps.html#hold-it-right-there-buddy-what-about-the-read-groups"><i class