br>
</font><font face="Arial" color="#000100" size="1">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</font><font face="Arial" color="#000100" size="2">BQ[k] &lt;- sum(bqt[k, ])<br><br><br>
</font><font face="Arial" color="#000100" size="1">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</font><font face="Arial" color="#000100" size="2"># Markov model probabilities:<br>
</font><font face="Arial" color="#000100" size="1">&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
</font><font fac