em>yes|no</em>]
</dt>
<dd>
<p>
be verbose (default: no)
</p>
</dd>
<dt class="hdlist1">
<strong>-mquals</strong> [<em>yes|no</em>]
</dt>
<dd>
<p>
store mapping quality for each read (default: no)
</p>
</dd>
<dt class="hdlist1">
<strong>-quals</strong> [<em>yes|no</em>]
</dt>
<dd>
<p>
store all quality values for each read, this implies enabling of option "vquals" (default: no)
</p>
</dd>
<dt class="hdlist1">
<strong>-vquals</strong> [<em>yes|no</em>]
</dt>
<dd>
<p>
store quality 