an>
<span><span class="op">)</span></span></code></pre></div>
    </div>

    <div id="arguments">
    <h2>Arguments</h2>
    <dl><dt>base_path</dt>
<dd><p>path to the parent directory which contains all of the subdirectories of interest.</p></dd>


<dt>secondary_path</dt>
<dd><p>path from the parent directory to count matrix files for each sample.</p></dd>


<dt>default_10X_path</dt>
<dd><p>logical (default TRUE) sets the secondary path variable to the default 10X
directory structure.</p></dd>


<dt>cellra