mdstan-guide/diagnose_utility.html#building-the-diagnose-command">view current version</a>.
</div>
<div id="diagnose" class="section level1" number="17">
<h1><span class="header-section-number">17</span> <code>diagnose</code>: Diagnosing Biased Hamiltonian Monte Carlo Inferences</h1>
<p>CmdStan is distributed with a utility that is able to read in and
analyze the output of one or more Markov chains to check for the
following potential problems:</p>
<ul>
<li>Divergent transitions</li>
<li>Transitions that hi