ss="p">[</span><span class="n">Shapemer</span><span class="p">,</span> <span class="n">List</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="n">ProteinKey</span><span class="p">,</span> <span class="nb">int</span><span class="p">]]]</span>
    <span class="sd">&quot;&quot;&quot;</span>
<span class="sd">    Maps each shapemer to the proteins which have it and to the corresponding residue indices within these proteins</span>
<span class="sd">    &quot;&quot;&quot;