     third-strongest, etc. motifs in a set of sequences.</p>
    </div>

    <h3>Input</h3>
    <div class="indent">
      <h4><span class='popt'>&lt;glam2 motif&gt;</span></h4>
      <p>The name of a GLAM2 output file.</p>
      <h4><span class='popt'>&lt;sequence file&gt;</span></h4>
      <p>The name of a file containing <a href="fasta-format.html">FASTA formatted</a> sequences.</p>
    </div>

    <h3>Output</h3>
    <div class="indent">
      <p>The input sequences are output with the GLAM2 motif sites