lat_hg19_6col.txt.gz&quot;, package = &quot;seqminer&quot;)
geneFile
</code></pre>

<pre><code>## [1] &quot;/Library/Frameworks/R.framework/Versions/2.15/Resources/library/seqminer/vcf/refFlat_hg19_6col.txt.gz&quot;
</code></pre>

<pre><code class="r">cfh &lt;- readVCFToMatrixByGene(fileName, geneFile, &quot;CFH&quot;, &quot;Synonymous&quot;)
</code></pre>

<pre><code>## Regcomp OK
</code></pre>

<pre><code class="r">cfh
</code></pre>

<pre><code>##             NA12286 NA12341 NA12342
## 1:196654324       1