pulated, should be full path</p></dd>


<dt>modality</dt>
<dd><p>(character) Modality of Image to be run</p></dd>


<dt>outdir</dt>
<dd><p>(character) output directory, if none specified, will 
default to <code>dirname(file)</code></p></dd>


<dt>intern</dt>
<dd><p>(logical) to be passed to <code><a href="https://rdrr.io/r/base/system.html" class="external-link">system</a></code></p></dd>


<dt>opts</dt>
<dd><p>(character) operations to be passed to <code>fsl_anat</code></p></dd>


<dt>verbose</dt>
<dd><p>(