nd VCF file generation can be found <a href="http://hutchdatascience.org/Choosing_Genomics_Tools/sequencing-data.html">here</a> in the sequencing data chapter.</p>
</div>
<div id="data-pre-processing" class="section level2" number="7.6">
<h2><span class="header-section-number">7.6</span> Data Pre-processing</h2>
<p><img src="resources/images/06a-WGS-and-WXS_files/figure-html/1YwxXy2rnUgbx_7B7ENH9wpDX-j6JpJz6lGVzOkjo0qY_g138a6ce16b7_35_38.png" title="Data pre-processing pipeline overview: Raw data from seque