umber">7.11</span> Tools for copy number variation analysis</h2>
<p>Similar to the mutation calling tools, many researchers will use several of these tools and investigate the overlapping hits seen with different copy number variant calling algorithms:<br />
- <a href="https://gatk.broadinstitute.org/hc/en-us/articles/360035531092--How-to-part-I-Sensitively-detect-copy-ratio-alterations-and-allelic-segments">GATK</a> GATK has a variety of tools that can be used to study changes in copy numbers of genes. Thi