ll other LD calculations are based on this equation. In particular,
the estimated genotype variances at loci 1 and 2 are
\(a1 + b1\) and \(a2 + b2\), respectively, which can be
used to calculate D and D'.</p>
<p>The reliability ratio for SNP i is defined by \((ai + bi)/ai\).
By default, we apply <code><a href="https://rdrr.io/pkg/ashr/man/ash.html" class="external-link">ash</a>()</code> (Stephens, 2016)
to the log of these reliability ratios before adjusting the
Pearson correlation. Standard errors are requ