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- <a href="https://gatk.broadinstitute.org/hc/en-us/articles/4404604788891-GermlineCNVCaller">gGNV</a> This is a germline CNV calling tool that can be used on both WGS and WXS data. This tool has booth COHORT and CASE modes. COHORT mode is used when providing a cohort of germline samples where CASE mode is used for individual samples. More details about these modes are described in the link above.<br />
- <a href="http://compbio.med.harvard.edu/BIC-seq/">BIC-seq2</a> This tool is used to detect CNVs w