s="n">proteins_to_shapemer_residue_indices</span><span class="p">,</span>
            <span class="n">shapemer_keys</span><span class="o">=</span><span class="p">[],</span>
            <span class="n">shapemer_to_protein_indices</span><span class="o">=</span><span class="p">{},</span>
        <span class="p">)</span>
        <span class="n">geometricus_class</span><span class="o">.</span><span class="n">shapemer_to_protein_indices</span> <span class="o">=</span> <span class="n">geometricus_class</span><span