lass="code">Alignments2</dt><dd>Shows individual alignments from the BAM file, as well as insertions, deletions, skipped regions, and SNPs encoded in the BAM's <span class="code">MD</span> or <span class="code">CIGAR</span> fields.</dd>
          <dt class="code">SNPCoverage</dt><dd>Shows a coverage
          histogram plot, with colored bars showing the locations of
          base-level mismatches and possible SNPs in the reads.</dd>
        </dl>

        To use them, set <span class="conf">type = Alignme