 will be rotated so that the [100] direction lies along X, the [010] along Y, and the [001] along Z. The final result will be output to <code>final.xsf</code>.</p></li>

<li><code class="command">atomsk initial.cfg -orient [001] [1_-1_0] 110 2_1_1 [0_-1_1] [1_-1_-1] final.xsf</code>
<p>The system <code>initial.cfg</code>, with the original orientation X=[001], Y=[1<span class="over">1</span>0], Z=[110], will be rotated so that the [211] direction lies along X, the [0<span class="over">1</span>1] along Y, an