b>other</sub> does not contain the canonical counts.</li>
<li>N<sub>valid_cov</sub> - the valid coverage, total number of valid call-pairs.</li>
<li>N<sub>diff</sub> - Number of reads with a primary base other than the primary base in column 4.</li>
<li>N<sub>delete</sub> - Number of reads with a deletion at this reference position.</li>
<li>N<sub>fail</sub> - Number of call-pairs where the probability of the at least one of the calls in the pair was below
the pass threshold. The threshold can be set on the