"vcfOnLDheatmap_files/figure-html/unnamed-chunk-3-1.png" width="700"></p>
<div class="sourceCode"><pre class="sourceCode r"><code class="sourceCode r">
<span class="co">#convert to snpMatrix - EAS</span>
gdat_eas &lt;-<span class="st"> </span><span class="kw">convertToNumeric</span>(eas_snpMat)
<span class="kw">colnames</span>(gdat_eas) &lt;-<span class="st"> </span>snpNames
gdat_eas&lt;-<span class="kw">as</span>(gdat_eas,<span class="st">"SnpMatrix"</span>)
<span class="co">#&gt; Warning in asMethod(objec