rue">1.1.</strong> Constructing bedMethyl tables</a></li><li class="chapter-item expanded "><a href="intro_pileup_hemi.html" class="active"><strong aria-hidden="true">1.2.</strong> Make hemi-methylation bedMethyl tables</a></li><li class="chapter-item expanded "><a href="intro_adjust.html"><strong aria-hidden="true">1.3.</strong> Updating and adjusting MM tags</a></li><li class="chapter-item expanded "><a href="intro_sample_probs.html"><strong aria-hidden="true">1.4.</strong> Inspecting base modification pr