lysis">Subpopulation analysis<a class="headerlink" href="#subpopulation-analysis" title="Permanent link"></a></h3>
<p>After learning joint latent representations from both modalities by MUSE, subpopulations in the tissue can be discovered by PhenoGraph (<a class="magiclink magiclink-github magiclink-repository" href="https://github.com/jacoblevine/PhenoGraph" title="GitHub Repository: jacoblevine/PhenoGraph">jacoblevine/PhenoGraph</a>). It can automatically determine the optimal cluster number. </p>
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