ore_t s;
<a name="l00224"></a>00224         s.lig_id = line;
<a name="l00225"></a>00225         s.affi = my_score.affiscore();
<a name="l00226"></a>00226         s.affieff = my_score.affiefficientscore();
<a name="l00227"></a>00227         s.orient = my_score.orientscore(); 
<a name="l00228"></a>00228         scores.push_back(s);
<a name="l00229"></a>00229         <span class="comment">// Assumption -- atom A in hbonds and salt bridges are always from the</span>
<a name="l00230"></a>00230         <span clas