ables/.DS_Store
    Ignored:    data/PCAWG/.DS_Store
    Ignored:    data/TCGA/.DS_Store
    Ignored:    data/focal_pcawg/.DS_Store
    Ignored:    output/

Unstaged changes:
    Modified:   analysis/Fig4_Epi.Rmd
    Modified:   analysis/Fig5_LUCAS.Rmd
    Modified:   analysis/figS22_liver.Rmd
    Modified:   analysis/figS23_24_lungval.Rmd

</code></pre>
<p>
Note that any generated files, e.g. HTML, png, CSS, etc., are not
included in this status report because it is ok for generated content to
have uncomm