remain close—and cells with different cluster labels to remain far apart—in the joint latent space.</p>
<h2 id="muse-software-package">MUSE software package<a class="headerlink" href="#muse-software-package" title="Permanent link"></a></h2>
<p>MUSE requires the following packages for installation:</p>
<ul>
<li>Python &gt;= 3.6</li>
<li>TensorFlow-GPU &gt;= 1.14.0</li>
<li>(TensorFlow &gt;= 1.14.0 if only use CPU) </li>
<li>Numpy &gt;= 1.16.2</li>
<li>Scipy = 1.4.1</li>
<li>phenograph &gt;= 1.5.4</li>