span class="n">tolerance</span><span class="o">=</span><span class="mf">0.45</span><span class="p">,</span>
                             <span class="n">ldict</span><span class="o">=</span><span class="n">JmolNN</span><span class="p">()</span><span class="o">.</span><span class="n">el_radius</span><span class="p">,</span> <span class="n">standardize</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">larger_cell</span><span class="o">=</span><span class="kc">Fa