genotype probability matrix</dd>
      </dl><dl><dt>
          
          <code><a href="P_small.html">P_small</a></code> 
        </dt>
        <dd>Smaller example genotype probability matrix</dd>
      </dl><dl><dt>
          
          <code><a href="annotate_tree.html">annotate_tree()</a></code> 
        </dt>
        <dd>Find maximum lilkelihood assignment of mutations on a tree</dd>
      </dl><dl><dt>
          
          <code><a href="get_mut_graph.html">get_mut_graph()</a></code> 
        </dt>
  