></pre></div>
<p>The susie and susie_rss analyses produce the exact same results when
the summary statistics <code>bhat</code>, <code>shat</code>,
<code>var_y</code> and <code>n</code> are provided to susie_rss (and
when <code>R</code> is an “in sample” correlation estimate—that is, when
it was computed from the same matrix <code>X</code> that was used to
obtain the other statistics). If the covariate effects are removed from
the genotypes in univariate regression, the in-sample LD matrix should
compu