ikelihood tree search via NNI</dd>
      </dl><dl><dt>
          
          <code><a href="plot_phylo_heatmap.html">plot_phylo_heatmap()</a></code> 
        </dt>
        <dd>Plot phylogeny and mutation heatmap</dd>
      </dl><dl><dt>
          
          <code><a href="run_scistree.html">run_scistree()</a></code> 
        </dt>
        <dd>Run the scistree workflow</dd>
      </dl><dl><dt>
          
          <code><a href="score_tree.html">score_tree()</a></code> 
        </dt>
        <dd>Score a tree 