lap the integer.</p>
<pre class="r"><code>ir &lt;- IRanges(start = 1:10, width = 3)
rl &lt;- coverage(ir)
rl</code></pre>
<pre><code>## integer-Rle of length 12 with 5 runs
##   Lengths: 1 1 8 1 1
##   Values : 1 2 3 2 1</code></pre>
<p>You can select high coverage regions by the <code>slice()</code> function:</p>
<pre class="r"><code>slice(rl, 2)</code></pre>
<pre><code>## Views on a 12-length Rle subject
## 
## views:
##     start end width
## [1]     2  11    10 [2 3 3 3 3 3 3 3 3 2]</code></pre>
<p>This