genomics data with disease information, and we want to know which cellular phenotypes are enriched for disease. In this vignette, we applied SignacX to classify cellular phenotypes in healthy and lupus nephritis kidney cells, and then we used <a href="https://pubmed.ncbi.nlm.nih.gov/30333237/">MASC</a> to identify which cellular phenotypes were disease-enriched.</p>
<p>Note:</p>
<ul>
<li>MASC typically requires equal numbers of cells and samples between case and control: an unequal number might skew the clu