tion corresponding to data_x.
  h_y:          modality-specific latent representation corresponding to data_y.
</pre></div>

<p>Inital reference labels (<code>label_x</code> and <code>label_y</code>) can either be provided by a modality-specific method (eg. use scScope for transcript feature learning and obtain cell clusters) or simply use general feature learning and cluster methods. We provide a demonstration to use PCA to get reference labels in <code>MUSE_demo.ipynb</code>.</p>
<h3 id="subpopulation-ana