dl><dl><dt>
          
          <code><a href="mut_nodes_small.html">mut_nodes_small</a></code> 
        </dt>
        <dd>Mutation placements calculated from tree_small and P_small</dd>
      </dl><dl><dt>
          
          <code><a href="mut_to_tree.html">mut_to_tree()</a></code> 
        </dt>
        <dd>Transfer mutation assignment onto a single-cell phylogeny</dd>
      </dl><dl><dt>
          
          <code><a href="perform_nni.html">perform_nni()</a></code> 
        </dt>
        <dd>Maximum l