s unmodified and the primary base in the reads was C.</li>
<li>N<sub>canonical</sub> - Number of call-pairs passing filters that were classified as unmodified (i.e. the pattern is <code>-,-</code>).</li>
<li>N<sub>other_pattern</sub> - Number of call-pairs passing filters where the pattern is different from the pattern in
column 4, but where the primary read base is the same. This count includes the unmodified pattern (<code>-,-</code>). <strong>Note</strong> this
differs from <code>pileup</code> where N<su