HOME/tools/generate_input.py -s jaws1 -p protein_scoop.pdb -l fragment.pdb -t fragment.tem -pw water_clr.pdb --gcmcwater jaws1_wat.pdb -o run</pre>
<p> 
creating <code>run_jaws.cmd</code>.
<H3>References</H3>
<p>1. Murray et.al. <i>J. Med. Chem.,</i> 2010, 53(16), pp 5942-5955</p>
<p>2. Michel et.al. <i>J. Phys. Chem. B,</i> 2009, 113(40), pp 13337-13346</p>
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