class="p">,</span> <span class="n">ldict</span><span class="o">=</span><span class="n">JmolNN</span><span class="p">()</span><span class="o">.</span><span class="n">el_radius</span><span class="p">):</span>
    <span class="sd">&quot;&quot;&quot;</span>
<span class="sd">    Finds bonded atoms and returns a adjacency matrix of bonded atoms.</span>

<span class="sd">    Author: &quot;Gowoon Cheon&quot;</span>
<span class="sd">    Email: &quot;gcheon@stanford.edu&quot;</span>

<span class="sd">    Args:</span>