ProtoMS as "grand canonical solutes", and will be generated later, but it is important to mention here that they will, as well, need a template. However, there is no need to generate this template, since it contains some particularities and it can be found in <code>$PROTOMSHOME/data/gcmc_tip4p.tem</code>.
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<h5>Setting up the protein</h5>
<li>First, we will change the name of atom and residue names in the protein PDB-file such that they agree with the ProtoMS naming convention. Type
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<pre>python $PROT