 class="n">log1p</span><span class="p">(</span><span class="n">adata_stagate</span><span class="p">)</span>
<span class="n">sc</span><span class="o">.</span><span class="n">pp</span><span class="o">.</span><span class="n">highly_variable_genes</span><span class="p">(</span><span class="n">adata_stagate</span><span class="p">,</span> <span class="n">flavor</span><span class="o">=</span><span class="s2">&quot;seurat_v3&quot;</span><span class="p">,</span> <span class="n">n_top_genes</span><span class="o">=</