span class="r-out co"><span class="r-pr">#&gt;</span> Taxon5    0     1</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Taxon6    0     0</span>
<span class="r-out co"><span class="r-pr">#&gt;</span> Taxon7   -1    -1</span>
<span class="r-in"><span><span class="va">reconstr</span> <span class="op">&lt;-</span> <span class="fu">includeTaxa</span><span class="op">(</span><span class="va">reconstr</span>, <span class="va">reconstr</span><span class="op">$</span><span class="va">inputs</span><spa