deling" class="section level1" number="5">
<h1><span class="header-section-number">Section 5</span> Linear Modeling</h1>
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<p>In this section, we will use wrappers around functions from the <a href="https://bioconductor.org/packages/release/bioc/html/limma.html">limma</a> package to fit linear models (linear regression, t-test, and ANOVA) to proteomics data. While LIMMA was originally intended for use with microarray data, it is