ve named all the Illumina files so that a directory listing of <code>rawdata</code> looks like this:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode sh"><code class="sourceCode bash"><span id="cb1-1"><a href="#cb1-1"></a><span class="ex">/rawdata/--%</span> ll <span class="kw">|</span> <span class="fu">head</span></span>
<span id="cb1-2"><a href="#cb1-2"></a><span class="ex">total</span> 3517864</span>
<span id="cb1-3"><a href="#cb1-3"></a><span class="ex">drwxrwxr-x</span> 2 biopipe biopipe  12