class="ex">/map/--%</span> samtools faidx gtseq15_loci.fasta</span>
<span id="cb5-3"><a href="#cb5-3"></a> </span>
<span id="cb5-4"><a href="#cb5-4"></a> </span>
<span id="cb5-5"><a href="#cb5-5"></a><span class="co"># call variants, instructing freebayes to NOT return MNPs or other complex variants</span></span>
<span id="cb5-6"><a href="#cb5-6"></a><span class="fu">nohup</span> freebayes-parallel <span class="op">&lt;(</span><span class="ex">fasta_generate_regions.py</span> gtseq15_loci.fasta.fai 150<span