o_S101_L001_I2_001.fastq.gz</span>
<span id="cb1-11"><a href="#cb1-11"></a><span class="ex">-rw-r--r--</span> 1 biopipe biopipe 4410826 Aug 18 11:53 satro_S101_L001_R1_001.fastq.gz</span></code></pre></div>
<p>In this case, there are 384 such sets of files. The number after the capital S in the filename gives the ID number of each individual fish.</p>
</div>
<div id="flashing-the-reads-together" class="section level3">
<h3 class="hasAnchor">
<a href="#flashing-the-reads-together" class="anchor"></a>Flashing