a tool that</p>
<ol style="list-style-type: decimal">
<li>automates the extraction of these haplotypes from aligned data (typically amplicon sequencing data)</li>
<li>provides useful filtering and visualizing capabilities for understanding your microhaplotype data and for calling genotypes at microhaplotypes.</li>
</ol>
<p>To understand what is involved in getting your data into <code>microhaplot</code>, it will be useful to have a brief introduction to what it does and how it operates. We will start by lis