p each) are amplified by PCR in a few hundred individuals. The DNA from different individuals is bar-coded so that it may be demultiplexed later, and then these amplified fragments are sequenced (usually to fairly high read depth) on an Illumina platform.</p>
<p>Though we use ‘microhaplot’ for amplicon sequencing, it might also be useful for analyzing haplotype data from experiments that sequence captured or baited fragments, (e.g., baited DD-Rad, RAPTURE, myBaits, ExonCapture, etc.), and might even be 