ome from a single chromosome. So, if you can draw bases present at 4 variant positions along a 150-bp read, you know that those 4 bases constitute a haplotype.<br>
</li>
<li>
<code>microhaplot</code> <strong>is not a de-novo assembly algorithm</strong>. This package will not infer or sort out any physical linkage between reads of different reference loci.</li>
</ul>
</div>
<div id="what-kind-of-data-can-i-use-with-microhaplot" class="section level2">
<h2 class="hasAnchor">
<a href="#what-kind-of-data-can-i-