d: <span class="extype" name="scala.Option">Option</span>[<span class="extype" name="scala.Int">Int</span>]</span>, <span name="observedAllele">observedAllele: <span class="extype" name="scala.Option">Option</span>[<span class="extype" name="scala.Predef.String">String</span>]</span>, <span name="referenceAllele">referenceAllele: <span class="extype" name="scala.Option">Option</span>[<span class="extype" name="scala.Predef.String">String</span>]</span>, <span name="cigar">cigar: <span class="extype" name="s