igh confidence</a></h2>
<p>As seen above, the output from <code>ope-chromatin predict</code> is a stream of probabilities over the genome or desired region of the genome.
A lot of these predictions are going to be very close to zero.
You can remove low-probability regions with the <code>--threshold</code> option so that only intervals with a probability greater than or equal to this value are reported.
Using this option in combination with <code>bedtools merge</code> can transform the bedGraph file into a B