e SQL-based viewer, but couldn’t figure out how to get at those in an exported fashion!)</li>
<li>We spent countless months trying to get <a href="https://github.com/ekg/freebayes">freebayes</a> to properly call microhaplotypes. Despite being an excellent variant detector, however, when presented with situations that were clearly simple microhaplotypes, <code>freebayes</code> would fail to call them, or would return results in a very difficult to manage “multinucleotide polymorphism” in the VCF.<br>
<