ations were called by soft-clipped reads.<br />
Filter 6 : Mutations locating at simple repeat sequences.<br />
Filter 7 : Mutations locating at a &gt;=15 homopolymer.<br />
Filter 8 : &gt;=10% low quality bases (Quality score &lt;18) in the
mutation supporting reads.</p>
<p>Supporting lengths are adjusted considering small repeat sequences
around the mutations.</p>
<div id="how-to-use" class="section level2">
<h2>How to use</h2>
<p>Rscript MicroSEC.R [working/output directory] [sample information tsv
file]