m a complete revision of the tools used to setup and analyse the simulation results.</p>
<p>The program is routinely used by several members of the research group of Professor Jonathan Essex for the development of new techniques to perform free energy calculations. This document has been written to try and explain how to use ProtoMS.</p>
<p>The user manual has been written as a reference manual, with extensive hyperlinking to allow you to quickly dip in and out to find the information you need. While you co