ffective the &lambda; replica exchange was. Type</p>
<pre>
grep "lambda swaps" out_free/lam-0.000/info
</pre>
and this will give you the overall acceptance ratio of the &lambda; swaps. It should be around 50% for this perturbation, indicating that the overall effectiveness is acceptable. Next, we will look at individual replicas and see how they exchange &lambda;-value throughout the simulation. This can be done with
<pre>
python $PROTOMSHOME/tools/calc_replicapath.py -f out_free/lam-*/results -p 0.0 0.2 0.