ame="l00028"></a>00028 <span class="comment">##</span>
<a name="l00029"></a>00029 <span class="comment">##              b - The pocket is defined as all atoms situated at</span>
<a name="l00030"></a>00030 <span class="comment">##              a distance D (defined by the user or 4.5 by default in </span>
<a name="l00031"></a>00031 <span class="comment">##              dparams.h) of each ligand's atoms.</span>
<a name="l00032"></a>00032 <span class="comment">##</span>
<a name="l00033"></a>00033 <span class="