>taxa_are_rows<a class="anchor" aria-label="anchor" href="#arg-taxa-are-rows"></a></dt>
<dd><p>(default to FALSE) see ?phyloseq for details</p></dd>


<dt id="arg-sam-names">sam_names<a class="anchor" aria-label="anchor" href="#arg-sam-names"></a></dt>
<dd><p>The name of the variable (column) in sam_data.csv to rename
samples. Note that if you use <code><a href="MiscMetabar-deprecated.html">write_phyloseq()</a></code> function to save your
physeq object, you may use sam_names = "X" to rename the samples nam