n class="ex">FLASH</span>]     Input format:          FASTQ, phred_offset=33</span>
<span id="cb3-23"><a href="#cb3-23"></a>[<span class="ex">FLASH</span>]     Output format:         FASTQ, phred_offset=33, gzip</span>
<span id="cb3-24"><a href="#cb3-24"></a>[<span class="ex">FLASH</span>]</span></code></pre></div>
<p>This has created a series of files named like <code>S${i}.extendedFrags.fastq.gz</code> in which the <code>${i}</code> is replaced by a number between 1 and 384. These files are gzipped fastq 