n data (either raw counts or normalized values) that have been already quality controlled, it is a good idea to use Seurat or other popular toolkits designed for the quality control of single-cell gene expression data (<i>e.g.</i>, filtering cells and normalizing the data) before the Treefit analysis.</p>
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<h3 id="loading-the-dataset">2.1. Loading the dataset<a class="anchor" aria-label="anchor" href="#loading-the-dataset"></a>
</h3>
<p>We analyze the dataset provided in <a href=