size, the finer-graned resolution the output at the cost of more computation.
This can be seen in the following example browser image:</p>
<p><img src="./images/open_chromatin_step_size.png" alt="Step size examples" title="Decreasing step size increases resolution" /></p>
<p>Step size of 25 base pairs is the default.</p>
<h2 id="using---threshold-to-get-regions-of-high-confidence"><a class="header" href="#using---threshold-to-get-regions-of-high-confidence">Using <code>--threshold</code> to get regions of h