ositions, and extracts the variant sequence of the reads at those positions. For example, let’s say that we know SNPs occur at positions 19, 27, 68, and 101 of a particular reference sequence that we have aligned our reads to. If a read aligns to the ref and shows an <code>A</code> at position 19, a <code>G</code> at position 27, a <code>C</code> at position 68, and another <code>C</code> at position 101, then we say the microhaplotype on that read is <code>AGCC</code>.</p>
<p><code>microhaplot</code> is 