L001_R1_001.fastq.gz ../rawdata/satro_S<span class="va">${i}</span>_L001_R2_001.fastq.gz<span class="kw">;</span> <span class="kw">done</span></span></code></pre></div>
<p>The output that <code>flash</code> spits out to stdout looks like this:</p>
<div class="sourceCode" id="cb3"><pre class="sourceCode sh"><code class="sourceCode bash"><span id="cb3-1"><a href="#cb3-1"></a>[<span class="ex">FLASH</span>] Starting FLASH v1.2.11</span>
<span id="cb3-2"><a href="#cb3-2"></a>[<span class="ex">FLASH</span>] Fast