stylistic:tone, structural:summarization, stylistic:style_transfer, information:extraction, quality:correction
Root microbiome

Mangrove roots harbour a repertoire of microbial taxa that contribute to important ecological functions in mangrove ecosystems. Like typical terrestrial plants, mangroves depend upon mutually beneficial interactions with microbial communities. In particular, microbes residing in developed roots could help mangroves transform nutrients into usable forms before plant assimilation. These microbes also provide mangroves phytohormones for suppressing phytopathogens or helping mangroves withstand heat and salinity. In turn, root-associated microbes receive carbon metabolites from the plant via root exudates, thus close associations between the plant and microbes are established for their mutual benefits.

The taxonomic class level shows that most Proteobacteria were reported to come from Gammaproteobacteria, followed by Deltaproteobacteria and Alphaproteobacteria. The diverse function and the phylogenic variation of Gammaproteobacteria, which consisted of orders such as Alteromonadales and Vibrionales, are found in marine and coastal regions and are high in abundance in mangrove sediments functioning as nutrient recyclers. Members of Deltaproteobacteria found in mangrove soil are mostly sulfur-related, consisting of Desulfobacterales, Desulfuromonadales, Desulfovibrionales, and Desulfarculales among others. Highly diverse microbial communities (mainly bacteria and fungi) have been found to inhabit and function in mangrove roots. For example, diazotrophic bacteria in the vicinity of mangrove roots could perform biological nitrogen fixation, which provides 40–60% of the total nitrogen required by mangroves; the soil attached to mangrove roots lacks oxygen but is rich in organic matter, providing an optimal microenvironment for sulfate-reducing bacteria and methanogens, ligninolytic, cellulolytic, and amylolytic fungi are prevalent in the mangrove root environment; rhizosphere fungi could help mangroves survive in waterlogged and nutrient-restricted environments. These studies have provided increasing evidence to support the importance of root-associated bacteria and fungi for mangrove growth and health.

Recent studies have investigated the detailed structure of root-associated microbial communities at a continuous fine-scale in other plants, where a microhabitat was divided into four root compartments: endosphere, episphere, rhizosphere, and nonrhizosphere or bulk soil. Moreover, the microbial communities in each compartment have been reported to have unique characteristics. Root exudates selectively enrich adapted microbial populations; however, these exudates were found to exert only marginal impacts on microbes in the bulk soil outside the rhizosphere. Furthermore, it was noted that the root episphere, rather than the rhizosphere, was primarily responsible for controlling the entry of specific microbial populations into the root, resulting in the selective enrichment of Proteobacteria in the endosphere. These findings provide new insights into the niche differentiation of root-associated microbial communities, Nevertheless, amplicon-based community profiling may not provide the functional characteristics of root-associated microbial communities in plant growth and biogeochemical cycling. Unraveling functional patterns across the four root compartments holds a great potential for understanding functional mechanisms responsible for mediating root–microbe interactions in support of enhancing mangrove ecosystem functioning.

The diversity of bacteria in disturbed mangroves is reported to be higher than inwell-preserved mangroves Studies comparing mangroves in different conservation states show that bacterial composition in disturbed mangrove sediment alters its structure, leading to a functional equilibrium, where the dynamics of chemicals in mangrove soils lead to the remodeling of its microbial structure.