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Extinct species

Three species of Malagasy hippopotamus became extinct during the Holocene on Madagascar, the last of them within the past 1,000 years. The Malagasy hippos were smaller than the modern hippo, a likely result of the process of insular dwarfism. Fossil evidence indicates many Malagasy hippos were hunted by humans, a factor in their eventual extinction. Isolated individual Malagasy hippos may have survived in remote pockets; in 1976, villagers described a living animal called the kilopilopitsofy, which may have been a Malagasy hippo.

Hippopotamus gorgops from the Early Pleistocene-early Middle Pleistocene of Africa and West Asia grew considerably larger than the living hippopotamus, with an estimated body mass of over 4,000 kg (8,800 lb). Hippopotamus antiquus ranged throughout Europe, extending as far north as Britain during the Early and Middle Pleistocene epochs, before being replaced by the modern H. amphibius in Europe during the latter part of the Middle Pleistocene. The Pleistocene also saw a number of dwarf species evolve on several Mediterranean islands, including Crete (Hippopotamus creutzburgi), Cyprus (the Cyprus dwarf hippopotamus, Hippopotamus minor), Malta (Hippopotamus melitensis), and Sicily (Hippopotamus pentlandi). Of these, the Cyprus dwarf hippo survived until the end of the Pleistocene or early Holocene. Evidence from the archaeological site Aetokremnos continues to cause debate on whether or not the species was driven to extinction or even encountered by human.