structural:reformatting, quality:correction, structural:expansion, information:highlighting
Renaissance and Baroque periods

During the Renaissance and Baroque periods, the organ's tonal colors became more varied. Organ builders fashioned stops that imitated various instruments, such as the krummhorn and the viola da gamba. Builders such as Arp Schnitger, Jasper Johannsen, Zacharias Hildebrandt and Gottfried Silbermann constructed instruments that were in themselves artistic, displaying both exquisite craftsmanship and beautiful sound. These organs featured well-balanced mechanical key actions, giving the organist precise control over the pipe speech. Schnitger's organs featured particularly distinctive reed timbres and large Pedal and Rückpositiv divisions.

Different national styles of organ building began to develop, often due to changing political climates. In the Netherlands, the organ became a large instrument with several divisions, doubled ranks, and mounted cornets. The organs of northern Germany also had more divisions, and independent pedal divisions became increasingly common. Organ makers began designing their cases in such a way that the divisions of the organ were visibly discernible. Twentieth-century musicologists have retroactively labelled this the Werkprinzip.

In France, as in Italy, Spain and Portugal, organs were primarily designed to play alternatim verses rather than accompany congregational singing. The French Classical Organ became remarkably consistent throughout France over the course of the Baroque era, more so than any other style of organ building in history, and standardized registrations developed. This type of instrument was elaborately described by Dom Bédos de Celles in his treatise L'art du facteur d'orgues (The Art of Organ Building). The Italian Baroque organ was often a single-manual instrument, without pedals. It was built on a full diapason chorus of octaves and fifths. The stop-names indicated the pitch relative to the fundamental ("Principale") and typically reached extremely short nominal pipe-lengths (for example, if the Principale were 8', the "Vigesimanona" was ½'). The highest ranks "broke back", their smallest pipes replaced by pipes pitched an octave lower to produce a kind of composite treble mixture.

In England, many pipe organs were destroyed or removed from churches during the English Reformation of the 16th century and the Commonwealth period. Some were relocated to private homes. At the Restoration, organ builders such as Renatus Harris and "Father" Bernard Smith brought new organ-building ideas from continental Europe. English organs evolved from small one- or two-manual instruments into three or more divisions disposed in the French manner with grander reeds and mixtures, though still without pedal keyboards. The Echo division began to be enclosed in the early 18th century, and in 1712, Abraham Jordan claimed his "swelling organ" at St Magnus-the-Martyr to be a new invention. The swell box and the independent pedal division appeared in English organs beginning in the 18th century.