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Evolution

Little is known of the evolutionary history of the caecilians, which have left a very sparse fossil record. The first fossil, a vertebra dated to the Paleocene, was not discovered until 1972. Other vertebrae, which have characteristic features unique to modern species, were later found in Paleocene and Late Cretaceous (Cenomanian) sediments.

Phylogenetic evidence suggests that the ancestors of caecilians and batrachians (including frogs and salamanders) diverged from one another during the Carboniferous. This leaves a gap of more than 70 million years between the presumed origins of caecilians and the earliest definitive fossils of stem-caecilians.

Prior to 2023, the earliest fossil attributed to a stem-caecilian (an amphibian closer to caecilians than to frogs or salamanders but not a member of the extant caecilian lineage) comes from the Jurassic period. This primitive genus, Eocaecilia, had small limbs and well-developed eyes. In their 2008 description of the Early Permian amphibian Gerobatrachus, Anderson and co-authors suggested that caecilians arose from the Lepospondyl group of ancestral tetrapods, and may be more closely related to amniotes than to frogs and salamanders, which arose from Temnospondyl ancestors. Numerous groups of lepospondyls evolved reduced limbs, elongated bodies, and burrowing behaviors, and morphological studies on Permian and Carboniferous lepospondyls have placed the early caecilian (Eocaecilia) among these groups. Divergent origins of caecilians and other extant amphibians may help explain the slight discrepancy between fossil dates for the origins of modern Amphibia, which suggest Permian origins, and the earlier dates, in the Carboniferous, predicted by some molecular clock studies of DNA sequences. Most morphological and molecular studies of extant amphibians, however, support monophyly for caecilians, frogs, and salamanders, and the most recent molecular study based on multi-locus data suggest a Late Carboniferous – Early Permian origin of extant amphibians.

Chinlestegophis, a stereospondyl temnospondyl from the Late Triassic Chinle Formation of Colorado, was proposed to be a stem-caecilian in a 2017 paper by Pardo and co-authors. If confirmed, this would bolster the proposed pre-Triassic origin of Lissamphibia suggested by molecular clocks. It would fill a gap in the fossil record of early caecilians and suggest that stereospondyls as a whole qualify as stem-group caecilians. However, affinities between Chinlestegophis and gymnophionans have been disputed along several lines of evidence. A 2020 study questioned the choice of characters supporting the relationship, and a 2019 reanalysis of the original data matrix found that other equally parsimonious positions were supported for the placement of Chinlestegophis and gymnophionans among tetrapods. In 2024, Chinlestegophis was consistently recovered as a sister taxon of Rileymillerus within various positions of Stereospondyli outside Lissamphibia based on phylogenetic analyses and revisions.

A 2023 paper by Kligman and co-authors described Funcusvermis, another amphibian from the Chinle Formation of Arizona. Funcusvermis was strongly supported as a stem group caecilian based on traits of its numerous skull and jaw fragments, the largest sample of caecilian fossils known. The paper discussed the various hypotheses for caecilian origins: the polyphyly hypothesis (caecilians as lepospondyls, and other lissamphibians as temnospondyls), the lepospondyl hypothesis (lissamphibians as lepospondyls), and the newer hypothesis supported by Chinlestegophis, where caecilians and other lissamphibians had separate origins within temnospondyls. Nevertheless, all of these ideas were refuted, and the most strongly supported hypothesis combined lissamphibians into a monophyletic group of dissorophoid temnospondyls closely related to Gerobatrachus.