information:filtering, structural:scholar_edition
External relationships

The turtles' exact ancestry has been disputed. It was believed they were the only surviving branch of the ancient evolutionary grade Anapsida, which includes groups such as procolophonids and pareiasaurs. All anapsid skulls lack a temporal opening while all other living amniotes have temporal openings. It was later suggested that the anapsid-like turtle skulls may be due to backward evolution rather than to anapsid descent. Fossil evidence has shown that early stem-turtles possessed small temporal openings.

Some early morphological phylogenetic studies have placed turtles closer to Lepidosauria (tuataras, lizards, and snakes) than to Archosauria (crocodilians and birds). By contrast, several molecular studies place turtles either within Archosauria, or, more commonly, as a sister group to extant archosaurs, though an analysis conducted by Tyler Lyson and colleagues (2012) recovered turtles as the sister group of lepidosaurs instead. Ylenia Chiari and colleagues (2012) analyzed 248 nuclear genes from 16 vertebrates and suggested that turtles share a more recent common ancestor with birds and crocodilians. The date of separation of turtles and birds and crocodilians was estimated to be 255 million years ago during the Permian. Through genomic -scale phylogenetic study of ultra-conserved elements (UCEs) to clarify the placement of turtles within reptiles, Nicholas Crawford and colleagues (2012) similarly found that turtles are closer to birds and crocodilians.

Using the draft (unfinished) genome sequences of the green sea turtle and the Chinese softshell turtle, Zhuo Wang and colleagues (2013) concluded that turtles are likely a sister group of crocodilians and birds. The external phylogeny of the turtles is shown in the cladogram below.