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The Hermitage since 1991

In 1991, it became known that some paintings looted by the Red Army in Germany in 1945 were held in the Hermitage. But only in October 1994 did the Hermitage officially announce that it had secretly been holding a major trove of French Impressionist and Post-Impressionist paintings from German private collections. The exhibition "Hidden Treasures Revealed", where 74 of the paintings were displayed for the first time, was opened on 30 March 1995 in the Nicholas Hall of the Winter Palace and lasted a year. Of the paintings, all but one originated from private rather than state German collections, including 56 paintings from the Otto Krebs collection, as well as the collection of Bernhard Koehler and paintings previously belonging to Otto Gerstenberg and his daughter Margarete Scharf, including the world-famous Place de la Concorde by Degas, In the Garden by Renoir, and White House at Night by Van Gogh. Some of the paintings are now on permanent display in several small rooms in the northeastern corner of the Winter Palace on the first floor.

In 1993, the Russian government gave the eastern wing of the nearby General Staff Building across the Palace Square to the Hermitage and the new exhibition rooms in 1999. Since 2003, the Great Courtyard of the Winter Palace has been open to the public.

In 2003, the Hermitage loaned 142 pieces to the University of Michigan Museum of Art for an exhibition titled The Romanovs Collect: European Art from the Hermitage.

In December 2004, the museum discovered another looted work of art: Venus Disarming Mars by Rubens was once in the collection of the Rheinsberg Palace near Berlin, and was apparently looted by Soviet troops from the Königsberg Castle in East Prussia in 1945. At the time, Mikhail Piotrovsky said the painting would be cleaned and displayed.

The museum announced in July 2006 that 221 minor items, including jewelry, Orthodox icons, silverware and richly enameled objects, had been stolen. The value of the stolen items was estimated to be approximately $543,000. By the end of 2006 several of the stolen items had been recovered.

In March 2020, Apple released a continuous 5 hour and 19 minute one shot film recorded entirely on an iPhone 11 Pro detailing many rooms of the museum which highlighted not only the artwork, but also the architecture, and live movement pieces interspersed throughout.