linguistic:paraphrasing, structural:scholar_edition
Genetics

Gibbons were the first apes to diverge from the common ancestor of humans and apes about 16.8 Mya. With a genome that has a 96% similarity to humans, the gibbon has a role as a bridge between Old World monkeys, such as macaques, and the great apes. According to a study that mapped synteny (genes occurring on the same chromosome) disruptions in the gibbon and human genome, humans and great apes are part of the same superfamily (Hominoidea) with gibbons. The karyotype of gibbons, however, diverged in a much more rapid fashion from the common hominoid ancestor than other apes.

The common ancestor of hominoids is shown to have a minimum of 24 major chromosomal rearrangements from the presumed gibbon ancestor's karyotype. Reaching the common gibbon ancestor's karyotype from today's various living species of gibbons will require up to 28 additional rearrangements. Adding up, this implies that at least 52 major chromosomal rearrangements are needed to compare the common hominoid ancestor to today's gibbons. No common specific sequence element in the independent rearrangements was found, while 46% of the gibbon-human synteny breakpoints occur in segmental duplication regions. This is an indication that these major differences in humans and gibbons could have had a common source of plasticity or change. Researchers view this unusually high rate of chromosomal rearrangement that is specific in small apes such as gibbons could potentially be due to factors that increase the rate of chromosomal breakage or factors that allow derivative chromosomes to be fixed in a homozygous state while mostly lost in other mammals.

The whole genome of the gibbons in Southeast Asia was first sequenced in 2014 by the German Primate Center, including Christian Roos, Markus Brameier, and Lutz Walter, along with other international researchers. One of the gibbons that had its genome sequenced is a white-cheeked gibbon (Nomascus leucogenys, NLE) named Asia. The team found that a jumping DNA element named LAVA transposon (also called gibbon-specific retrotransposon) is unique to the gibbon genome apart from humans and the great apes. The LAVA transposon increases mutation rate, thus is supposed to have contributed to the rapid and greater change in gibbons in comparison to their close relatives, which is critical for evolutionary development. The very high rate of chromosomal disorder and rearrangements (such as duplications, deletions or inversions of large stretches of DNA) due to the moving of this large DNA segment is one of the key features that are unique to the gibbon genome.

A special feature of the LAVA transposon is that it positioned itself precisely between genes that are involved in chromosome segregation and distribution during cell division, which results in a premature termination state leading to an alteration in transcription. This incorporation of the jumping gene near genes involved in chromosome replication is thought to make the rearrangement in the genome even more likely, leading to a greater diversity within the gibbon genera.

In addition, some characteristic genes in the gibbon genome had gone through a positive selection and are suggested to give rise to specific anatomical features for gibbons to adapt to their new environment. One of them is TBX5, which is a gene that is required for the development of the front extremities or forelimbs such as long arms. The other is COL1A1, which is responsible for the development of collagen, a protein that is directly involved with the forming of connective tissues, bone, and cartilage. This gene is thought to have a role in gibbons' stronger muscles.

Researchers have found a coincidence between major environmental changes in Southeast Asia about 5 Mya that caused a cyclical dynamic of expansions and contractions of their forest habitat, an instance of radiation experienced by the gibbon genera. This may have led to the development of a suite of physical characteristics, distinct from their great ape relatives, to adapt to their habitat of dense, canopy forest.

These crucial findings in genetics have contributed to the use of gibbons as a genetic model for chromosome breakage and fusion, which is a type of translocation mutation. The unusually high number of structural changes in the DNA and chromosomal rearrangements could lead to problematic consequences in some species. Gibbons, however, not only seemed to be free from problems but let the change help them effectively adapt to their environment. Thus, gibbons are organisms on which genetics research could be focused to broaden the implications to human diseases related to chromosomal changes, such as cancer, including chronic myeloid leukemia.