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Science

Sea urchins are traditional model organisms in developmental biology. This use originated in the 1800s, when their embryonic development became easily viewed by microscopy. The transparency of the urchin's eggs enabled them to be used to observe that sperm cells actually fertilize ova. They continue to be used for embryonic studies, as prenatal development continues to seek testing for fatal diseases. Sea urchins are being used in longevity studies for comparison between the young and old of the species, particularly for their ability to regenerate tissue as needed. Scientists at the University of St Andrews have discovered a genetic sequence, the '2A' region, in sea urchins previously thought to have belonged only to viruses like foot-and-mouth disease virus. More recently, Eric H. Davidson and Roy John Britten argued for the use of urchins as a model organism due to their easy availability, high fecundity, and long lifespan. Beyond embryology, urchins provide an opportunity to research cis-regulatory elements. Oceanography has taken an interest in monitoring the health of urchins and their populations as a way to assess overall ocean acidification, temperatures, and ecological impacts.

The organism's evolutionary placement and unique embryology with five-fold symmetry were the major arguments in the proposal to seek the sequencing of its genome. Importantly, urchins act as the closest living relative to chordates and thus are of interest for the light they can shed on the evolution of vertebrates. The genome of Strongylocentrotus purpuratus was completed in 2006 and established homology between sea urchin and vertebrate immune system -related genes. Sea urchins code for at least 222 Toll-like receptor genes and over 200 genes related to the Nod-like-receptor family found in vertebrates. This increases its usefulness as a valuable model organism for studying the evolution of innate immunity. The sequencing also revealed that while some genes were thought to be limited to vertebrates, there were also innovations that have previously never been seen outside the chordate classification, such as immune transcription factors PU.1 and SPIB.