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Spanish conquest (1524–1539)

On his fourth and the final voyage to the New World in 1502, Christopher Columbus landed near the modern town of Trujillo, near Guaimoreto Lagoon, becoming the first European to visit the Bay Islands on the coast of Honduras. On 30 July 1502, Columbus sent his brother Bartholomew to explore the islands and Bartholomew encountered a Mayan trading vessel from Yucatán, carrying well-dressed Maya and a rich cargo. Bartholomew's men stole the cargo they wanted and kidnapped the ship's elderly captain to serve as an interpreter in the first recorded encounter between the Spanish and the Maya.

In March 1524, Gil González Dávila became the first Spaniard to enter Honduras as a conquistador. followed by Hernán Cortés, who had brought forces down from Mexico. Much of the conquest took place in the following two decades, first by groups loyal to Cristóbal de Olid, and then by those loyal to Francisco de Montejo but most particularly by those following Alvarado. In addition to Spanish resources, the conquerors relied heavily on armed forces from Mexico— Tlaxcalans and Mexica armies of thousands who remained garrisoned in the region.

Resistance to conquest was led in particular by Lempira. Many regions in the north of Honduras never fell to the Spanish, notably the Miskito Kingdom. After the Spanish conquest, Honduras became part of Spain's vast empire in the New World within the Kingdom of Guatemala. Trujillo and Gracias were the first city-capitals. The Spanish ruled the region for approximately three centuries.