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Post-war reconstruction and insurgency

Chechen separatists continued to fight Russian troops and conduct terror attacks. In October 2002, 40–50 Chechen rebels seized a Moscow theater and took about 900 civilians hostage. The crisis ended with 117 hostages and up to 50 rebels dead, mostly due to an unknown aerosol pumped into the building by Russian special forces to incapacitate the people inside.

In response to these attacks, Russia tightened its grip on Chechnya and expanded its anti-terrorist operations throughout the region. Russia installed a pro-Russian Chechen regime. In 2003, a referendum was held on a constitution that reintegrated Chechnya within Russia but provided limited autonomy. According to the Chechen government, the referendum passed with 95.5% of the votes and almost 80% turnout. The Economist was skeptical of the results, arguing that "few outside the Kremlin regard the referendum as fair".

In September 2004, separatist rebels occupied a school in the town of Beslan, North Ossetia, demanding recognition of the independence of Chechnya and a Russian withdrawal. 1,100 people (including 777 children) were taken hostage. The attack lasted three days, resulting in the deaths of over 331 people, including 186 children. After the 2004 school siege, Russian president Vladimir Putin announced sweeping security and political reforms, sealing borders in the Caucasus region and revealing plans to give the central government more power. He also vowed to take tougher action against domestic terrorism, including preemptive strikes against Chechen separatists. In 2005 and 2006, separatist leaders Aslan Maskhadov and Shamil Basayev were killed.

Since 2007, Chechnya has been governed by Ramzan Kadyrov. Kadyrov's rule has been characterized by high-level corruption, a poor human rights record, widespread use of torture, and a growing cult of personality. Allegations of anti-gay purges in Chechnya were initially reported on 1 April 2017.

In April 2009, Russia ended its counter-terrorism operation and pulled out the bulk of its army. The insurgency in the North Caucasus continued even after this date. The Caucasus Emirate had fully adopted the tenets of a Salafist jihadist group through its strict adherence to the Sunni Hanbali obedience to the literal interpretation of the Quran and the Sunnah.

The Chechen government has been outspoken in its support for the 2022 Russian invasion of Ukraine, where a Chechen military force, the Kadyrovtsy, which is under Kadyrov's personal command, has played a leading role, notably in the Siege of Mariupol. Meanwhile, a substantial number of Chechen separatists have allied themselves to the Ukrainian cause and are fighting a mutual Russian enemy in the Donbas. In June 2022, the US State Department advised citizens not to travel to Chechnya, due to terrorism, kidnapping, and risk of civil unrest.