structural:scholar_edition, structural:expansion
Olfactory

Rodents use scent marking in many social contexts including inter- and intra-species communication, the marking of trails and the establishment of territories. Their urine provides genetic information about individuals including the species, the sex and individual identity, and metabolic information on dominance, reproductive status and health. Compounds derived from the major histocompatibility complex (MHC) are bound to several urinary proteins. The odor of a predator depresses scent-marking behavior.

Rodents are able to recognize close relatives by smell and this allows them to show nepotism (preferential behavior toward their kin) and also avoid inbreeding. This kin recognition is by olfactory cues from urine, feces and glandular secretions. The main assessment may involve the MHC, where the degree of relatedness of two individuals is correlated to the MHC genes they have in common. In non-kin communication, where more permanent odor markers are required, as at territorial borders, then non-volatile major urinary proteins (MUPs), which function as pheromone transporters, may also be used. MUPs may also signal individual identity, with each male house mouse (Mus musculus) excreting urine containing about a dozen genetically encoded MUPs.

House mice deposit urine, which contains pheromones, for territorial marking, individual and group recognition, and social organization. Territorial beavers and red squirrels investigate and become familiar with the scents of their neighbors and respond less aggressively to intrusions by them than to those made by non-territorial "floaters" or strangers. This is known as the " dear enemy effect ".