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The Entrez
Entrez
Global Query Cross-Database Search System is a federated search engine, or web portal that allows users to search many discrete health sciences databases at the National Center for Biotechnology Information (NCBI) website.[1] The NCBI is a part of the National Library of Medicine (NLM), which is itself a department of the National Institutes of Health
National Institutes of Health
(NIH), which in turn is a part of the United States Department of Health and Human Services. The name "Entrez" (a greeting meaning "Come in!" in French) was chosen to reflect the spirit of welcoming the public to search the content available from the NLM. Entrez
Entrez
Global Query is an integrated search and retrieval system that provides access to all databases simultaneously with a single query string and user interface. Entrez
Entrez
can efficiently retrieve related sequences, structures, and references. The Entrez
Entrez
system can provide views of gene and protein sequences and chromosome maps. Some textbooks are also available online through the Entrez
Entrez
system.

Contents

1 Features 2 Databases 3 Access 4 History 5 References 6 External links

Features[edit] The Entrez
Entrez
front page provides, by default, access to the global query. All databases indexed by Entrez
Entrez
can be searched via a single query string, supporting boolean operators and search term tags to limit parts of the search statement to particular fields. This returns a unified results page, that shows the number of hits for the search in each of the databases, which are also links to actual search results for that particular database. Entrez
Entrez
also provides a similar interface for searching each particular database and for refining search results. The Limits feature allows the user to narrow a search a web forms interface. The History feature gives a numbered list of recently performed queries. Results of previous queries can be referred to by number and combined via boolean operators. Search results can be saved temporarily in a Clipboard. Users with a MyNCBI account can save queries indefinitely and also choose to have updates with new search results e-mailed for saved queries of most databases. It is widely used in the field of biotechnology as a reference tool for students and professionals alike. Databases[edit] Entrez
Entrez
searches the following databases:

PubMed: biomedical literature citations and abstracts, including Medline - articles from (mainly medical) journals, often including abstracts. Links to PubMed
PubMed
Central and other full-text resources are provided for articles from the 1990s. PubMed
PubMed
Central: free, full-text journal articles Site Search: NCBI web and FTP web sites Books: online books Online Mendelian Inheritance in Man (OMIM) Nucleotide: sequence database (GenBank) Protein: sequence database Genome: whole genome sequences and mapping Structure: three-dimensional macromolecular structures Taxonomy: organisms in GenBank
GenBank
Taxonomy SNP: single nucleotide polymorphism Gene:[2] gene-centered information HomoloGene: eukaryotic homology groups PubChem Compound: unique small molecule chemical structures PubChem Substance: deposited chemical substance records Genome Project: genome project information UniGene: gene-oriented clusters of transcript sequences CDD: conserved protein domain database PopSet: population study data sets (epidemiology) GEO Profiles: expression and molecular abundance profiles GEO DataSets: experimental sets of GEO data Sequence read archive: high-throughput sequencing data Cancer Chromosomes: cytogenetic databases PubChem BioAssay: bioactivity screens of chemical substances Probe: sequence-specific reagents NLM Catalog: NLM bibliographic data for over 1.2 million journals, books, audiovisuals, computer software, electronic resources, and other materials resident in LocatorPlus (updated every weekday).

Access[edit] In addition to using the search engine forms to query the data in Entrez, NCBI provides the Entrez
Entrez
Programming Utilities[3] (eUtils) for more direct access to query results. The eUtils are accessed by posting specially formed URLs to the NCBI server, and parsing the XML response. There was also an eUtils SOAP interface which was terminated on July 2015.[4] History[edit] In 1991, Entrez
Entrez
was introduced in CD form. In 1993, a client-server version of the software provided connectivity with the internet. In 1994, NCBI established a website, and Entrez
Entrez
was a part of this initial release. In 2001, Entrez
Entrez
bookshelf was released and in 2003, the Entrez
Entrez
Gene
Gene
database was developed.[5] References[edit]

^ NCBI Resource Coordinators (2012). "Database resources of the National Center for Biotechnology Information". Nucleic Acids Research. 41 (Database issue): D8–D20. doi:10.1093/nar/gks1189. PMC 3531099 . PMID 23193264.  ^ "Home - Gene
Gene
- NCBI".  ^ " Entrez
Entrez
Utilities".  ^ "The E-utility Web Service (SOAP)".  ^ Smith, Kent. "A Brief History of NCBI's Formation and Growth". The NCBI Handbook [Internet]. 2nd edition. Retrieved 3 May 2014. 

External links[edit]

Entrez
Entrez
search engin

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