MBLWHOI Library http://hdl.handle.net/1912/1 MBLWHOI Library Sun, 06 Nov 2016 11:51:36 GMT 2016-11-06T11:51:36Z MBLWHOI Library https://darchive.mblwhoilibrary.org:443/bitstream/id/16437/ http://hdl.handle.net/1912/1 Open Access : the Power of One (or, how one individual moved an institution toward adopting an open access policy) http://hdl.handle.net/1912/8471 Open Access : the Power of One (or, how one individual moved an institution toward adopting an open access policy) Manning, Cara C. A presentation and discussion on the ongoing process to elevate open access in Woods Hole, sponsored by the MBLWHOI Library in observance of International Open Access week. Presented 25 October 2016 at the Smith Lab, Woods Hole Oceanographic Institution, Woods Hole, MA Tue, 25 Oct 2016 00:00:00 GMT http://hdl.handle.net/1912/8471 2016-10-25T00:00:00Z Key components of data publishing : using current best practices to develop a reference model for data publishing http://hdl.handle.net/1912/8147 Key components of data publishing : using current best practices to develop a reference model for data publishing Austin, Claire C; Bloom, Theodora; Dallmeier-Tiessen, Sunje; Khodiyar, Varsha; Murphy, Fiona; Nurnberger, Amy; Raymond, Lisa; Stockhause, Martina; Tedds, Jonathan; Vardigan, Mary; Whyte, Angus Availability of workflows for data publishing could have an enormous impact on researchers, research practices and publishing paradigms, as well as on funding strategies and career and research evaluations. We present the generic components of such workflows in order to provide a reference model for these stakeholders. Methods: The RDA-WDS Data Publishing Workflows group set out to study the current data publishing workflow landscape across disciplines and institutions. A diverse set of workflows were examined to identify common components and standard practices, including basic self-publishing services, institutional data repositories, long term projects, curated data repositories, and joint data journal and repository arrangements. Results: The results of this examination have been used to derive a data publishing reference model comprised of generic components. From an assessment of the current data publishing landscape, we highlight important gaps and challenges to consider, especially when dealing with more complex workflows and their integration into wider community frameworks. Conclusions: It is clear that the data publishing landscape is varied and dynamic, and that there are important gaps and challenges. The different components of a data publishing system need to work, to the greatest extent possible, in a seamless and integrated way. We therefore advocate the implementation of existing standards for repositories and all parts of the data publishing process, and the development of new standards where necessary. Effective and trustworthy data publishing should be embedded in documented workflows. As more research communities seek to publish the data associated with their research, they can build on one or more of the components identified in this reference model. Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of Springer for personal use, not for redistribution. The definitive version was published in International Journal on Digital Libraries (2016), doi:10.1007/s00799-016-0178-2. Fri, 04 Dec 2015 00:00:00 GMT http://hdl.handle.net/1912/8147 2015-12-04T00:00:00Z Central spindle self-organization and cytokinesis in artificially activated sea urchin eggs http://hdl.handle.net/1912/8013 Central spindle self-organization and cytokinesis in artificially activated sea urchin eggs Henson, John H.; Buckley, Mary W.; Yeterian, Mesrob; Weeks, Richard M.; Simerly, Calvin R.; Shuster, Charles B. The ability of microtubules of the mitotic apparatus to control the positioning and initiation of the cleavage furrow during cytokinesis was first established from studies on early echinoderm embryos. However, the identity of the microtubule population that imparts cytokinetic signaling is unclear. The two main––and not necessarily mutually exclusive–– candidates are the central spindle and the astral rays. In the present study, we examined cytokinesis in ammonia-activated sea urchin eggs, which lack paternally derived centrosomes and undergo mitosis mediated by unusual anastral, bipolar mini-spindles. Live cell imaging and immunolabeling for microtubules and the centralspindlin constituent and kinesin-related protein, MKLP1, demonstrated that furrowing in ammonia-activated eggs was associated with aligned arrays of centralspindlin-linked, opposed bundles of antiparallel microtubules. These autonomous, zipper- like arrays were not associated with a mitotic apparatus, but did possess characteristics similar to the central spindle region of control, fertilized embryos. Our results highlight the self-organizing nature of the central spindle region and its ability to induce cytokinesis-like furrowing, even in the absence of a complete mitotic apparatus. Author Posting. © Marine Biological Laboratory, 2016. This article is posted here by permission of Marine Biological Laboratory for personal use, not for redistribution. The definitive version was published in Biological Bulletin 230, no.2 (2016): 85-95. Fri, 01 Apr 2016 00:00:00 GMT http://hdl.handle.net/1912/8013 2016-04-01T00:00:00Z Ocean data publication cookbook http://hdl.handle.net/1912/7962 Ocean data publication cookbook Leadbetter, Adam; Raymond, Lisa; Chandler, Cynthia L.; Pikula, Linda; Pissierssens, Peter; Urban, Ed Executive summary: This “Cookbook” has been written for data managers and librarians who are interested in assigning a permanent identifier to a dataset for the purposes of publishing that dataset online and for the citation of that dataset within the scientific literature. A formal publishing process adds value to the dataset for the data originators as well as for future users of the data. Value may be added by providing an indication of the scientific quality and importance of the dataset (as measured through a process of peer review), and by ensuring that the dataset is complete, frozen and has enough supporting metadata and other information to allow it to be used by others. Publishing a dataset also implies a commitment to persistence of the data and allows data producers to obtain academic credit for their work in creating the datasets. One form of persistent identifier is the Digital Object Identifier (DOI). A DOI is a character string (a "digital identifier") used to provide a unique identity of an object such as an electronic document. Metadata about the object is stored in association with the DOI name and this metadata may include a location where the object can be found. The DOI for a document is permanent, whereas its location and other metadata may change. Referring to an online document by its DOI provides more stable linking than simply referring to it by its URL, because if its URL changes, the publisher need only update the metadata for the DOI to link to the new URL. A DOI may be obtained for a variety of objects, including documents, data files and images. The assignment of DOIs to peer-reviewed journal articles has become commonplace. This cookbook provides a step-by-step guide to the data publication process and showcases some best practices for data publication. This cookbook is an outcome of the 5th session of the SCOR/IODE/MBLWHOI Library Workshop on Data Publication and is posted here by permission of UNESCO. Tue, 01 Jan 2013 00:00:00 GMT http://hdl.handle.net/1912/7962 2013-01-01T00:00:00Z
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