Datasets:
Add HDNNP_H2O files
Browse files- README.md +59 -0
- co/co_0.parquet +3 -0
- cs/cs_0.parquet +3 -0
- cs_co_map/cs_co_map_0.parquet +3 -0
- ds.parquet +3 -0
README.md
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---
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configs:
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- config_name: default
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data_files: "co/*.parquet"
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- config_name: info
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data_files: "ds.parquet"
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- config_name: configuration_sets
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data_files: "cs/*.parquet"
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- config_name: config_set_mapping
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data_files: "cs_co_map/*.parquet"
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license: cc-by-4.0
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tags:
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- molecular dynamics
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- mlip
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- interatomic potential
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pretty_name: HDNNP H2O
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---
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### <details><summary>Cite this dataset </summary>Morawietz, T., and Behler, J. _HDNNP H2O_. ColabFit, 2023. https://doi.org/10.60732/4f9f05e5</details>
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#### This dataset has been curated and formatted for the ColabFit Exchange
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#### This dataset is also available on the ColabFit Exchange:
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https://materials.colabfit.org/id/DS_in2572v33lon_0
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#### Visit the ColabFit Exchange to search additional datasets by author, description, element content and more.
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https://materials.colabfit.org
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<br><hr>
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# Dataset Name
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HDNNP H2O
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### Description
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Approximately 28,000 configurations split into 4 datasets, each using a different functional, used in the training of a high-dimensional neural network potential (HDNNP).
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### Dataset authors
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Tobias Morawietz, Jörg Behler
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### Publication
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https://doi.org/10.1073/pnas.1602375113
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### Original data link
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https://doi.org/10.5281/zenodo.2634097
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### License
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CC-BY-4.0
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### Number of unique molecular configurations
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14537
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### Number of atoms
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1523796
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### Elements included
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H, O
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### Properties included
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energy, atomic forces, cauchy stress
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<br>
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<hr>
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# Usage
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- `ds.parquet` : Aggregated dataset information.
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- `co/` directory: Configuration rows each include a structure, calculated properties, and metadata.
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- `cs/` directory : Configuration sets are subsets of configurations grouped by some common characteristic. If `cs/` does not exist, no configurations sets have been defined for this dataset.
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- `cs_co_map/` directory : The mapping of configurations to configuration sets (if defined).
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<br>
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#### ColabFit Exchange documentation includes descriptions of content and example code for parsing parquet files:
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- [Parquet parsing: example code](https://materials.colabfit.org/docs/how_to_use_parquet)
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- [Dataset info schema](https://materials.colabfit.org/docs/dataset_schema)
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- [Configuration schema](https://materials.colabfit.org/docs/configuration_schema)
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- [Configuration set schema](https://materials.colabfit.org/docs/configuration_set_schema)
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- [Configuration set to configuration mapping schema](https://materials.colabfit.org/docs/cs_co_mapping_schema)
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co/co_0.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:512d63446cee01964ba83c5aaa31a806f76047b7a8aac1ca1a971e03e7fa8e5d
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size 121111276
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cs/cs_0.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:0157e474aca53c165aae567db28f725227b5bf346d17b417e23bfaa7ffee327a
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size 7473
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cs_co_map/cs_co_map_0.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:9b4caa0b5aad4084ae332d8b4994860a9caa242f6252a769354f03f8af29220c
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size 184946
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ds.parquet
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version https://git-lfs.github.com/spec/v1
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oid sha256:74ae0fe721827536617535b52cf0846ae1d6dffa18f5c9493c4cbd1b5bfb48a5
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size 16585
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