From murdoch.duncan at gmail.com  Tue Dec  9 11:04:14 2014
From: murdoch.duncan at gmail.com (Duncan Murdoch)
Date: Tue, 09 Dec 2014 05:04:14 -0500
Subject: [Rd] UTF8 markdown vignette
In-Reply-To: <AA818EAD2576BC488B4F623941DA7427F3C7D1D8@inbomail.inbo.be>
References: <AA818EAD2576BC488B4F623941DA7427F3C7D1D8@inbomail.inbo.be>
Message-ID: <5486C91E.90409@gmail.com>

On 09/12/2014, 4:48 AM, ONKELINX, Thierry wrote:
> Dear all,
> 
> I'm trying to use a Markdown vignette with UTF-8 encoding. It compiles well when knitting the vignette in RStudio, but it fails to recognize the UTF-8 settings when building the source package. Can someone point out what I'm doing wrong? I tried to put the relevant information below.

You don't describe the symptoms of "failing to recognize", but from the
look of it, this is a problem with the knitr::rmarkdown engine or with
the devtools packaging, so you should probably ask on an RStudio forum.

Duncan Murdoch

> Best regards,
> 
> Thierry
> 
> Details:
> 
> Using 64-bit R 3.1.2 with encoding = "native.enc" on Windows 7 with Rstudio 0.97.1091.
> 
> The source packages is build using the devtools package. The build command is R --vanilla CMD build  "myPackage" --no-manual  --no-resave-data
> 
> The DESCRIPTION file has
> 
> VignetteBuilder: knitr
> Suggests: knitr
> Imports: rmarkdown
> 
> The markdown vignette YAML contains
> vignette: >
>   %\VignetteEngine{knitr::rmarkdown}
>   %\VignetteIndexEntry{The title}
>   \usepackage[utf8]{inputenc}
> 
> The custom output style converts the markdown to beamer with the --latex-engine = xelatex flag.
> 
> The vignette in tar.gz passes R --vanilla CMD check  --timings --as-cran
> 
> * checking files in 'vignettes' ... OK
> * checking for unstated dependencies in vignettes ... OK
> * checking package vignettes in 'inst/doc' ... OK
> * checking running R code from vignettes ...
>    'markdown_intro.Rmd' using 'UTF-8' ... OK
> OK
> * checking re-building of vignette outputs ... [22s] OK
> 
> 
> 
> ir. Thierry Onkelinx
> Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest
> team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
> Kliniekstraat 25
> 1070 Anderlecht
> Belgium
> + 32 2 525 02 51
> + 32 54 43 61 85
> Thierry.Onkelinx at inbo.be
> www.inbo.be
> 
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> ~ Sir Ronald Aylmer Fisher
> 
> The plural of anecdote is not data.
> ~ Roger Brinner
> 
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> ~ John Tukey
> 
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[Rd] UTF8 markdown vignette
Duncan Murdoch