From ralf.seppelt at ufz.de  Tue May 17 11:33:51 2005
From: ralf.seppelt at ufz.de (Ralf Seppelt)
Date: Tue May 17 11:32:57 2005
Subject: [Rd] Implementing R on  IBM p690 cluster Jump
In-Reply-To: <4284B64C.7000008@ufz.de>
References: <4281BAA4.9000309@ufz.de>
	<Pine.LNX.4.61.0505110922590.12010@gannet.stats>
	<4284B64C.7000008@ufz.de>
Message-ID: <4289BA7F.1080608@ufz.de>

Dear All,

recently I posted a probably difficult question concerning the 
installation and implementation of R-2.1.0 on the IBM p690 cluster 
"Jump" at the research centre in J?lich, Germany.

We identified several modifications for an installation such as:

(i) the installation of the most recent iconflib in the local user directory
(ii) the configuration command
OBJECT_MODE=64 MAKE=gmake CC="cc -DSTDC"  SHLIB_LDFLAGS="-Wl,-G" 
F77="xlf" PREFIX=/home3/zdvex/ufzaloe ./configure --without-x 
--without-blas --without-readline --with-libiconv-prefix=
=/home3/zdvex/ufzaloe/lib

(iii) and the compilation command OBJECT_MODE=64 gmake

(thanks to Christoph Pospiech for help).

The really severe problem is, that the compilation now aboarts when 
making the survival R-library. This is what we get:

gmake[3]: Leaving directory `/work/.j36/R.INSTALL.3207208/survival/src'
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
/home3/zdvex/ufzaloe/R-2.1.0/bin/INSTALL[325]: 1364064 Illegal 
instruction(coredump)
ERROR: lazy loading failed for package 'survival'
** Removing '/home3/zdvex/ufzaloe/R-2.1.0/library/survival'
gmake[2]: *** [survival.ts] Error 1
gmake[2]: Leaving directory 
`/home3/zdvex/ufzaloe/R-2.1.0/src/library/Recommended'
gmake[1]: *** [recommended-packages] Error 2
gmake[1]: Leaving directory 
`/home3/zdvex/ufzaloe/R-2.1.0/src/library/Recommended'
gmake: *** [stamp-recommended] Error 2
ufzaloe@j36.!:

(see attchment, zip archive of log-file).

Besides the OS-problems (like missing readline implementation) it seems 
as if we need good help from the R developers community, as this most 
recent bug (compilation of survival) seems to an R problem.

However, we are still strongly interested in getting this stuff running,
any good suggestions very welcome!

Cheers
	Ralf


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[Rd] Implementing R on IBM p690 cluster Jump
Ralf Seppelt