From mtmorgan at fhcrc.org  Thu Oct  1 13:54:51 2009
From: mtmorgan at fhcrc.org (Martin Morgan)
Date: Thu, 01 Oct 2009 04:54:51 -0700
Subject: [Rd] Dependency 'sma' is not available
In-Reply-To: <Pine.LNX.4.64.0910011128090.15444@raven.linux.ox.ac.uk>
References: <Pine.LNX.4.64.0909301726210.17114@raven.linux.ox.ac.uk>	<4AC38BDF.6010308@statistik.tu-dortmund.de>	<77EB52C6DD32BA4D87471DCD70C8D70001E5F4AF@NA-PA-VBE03.na.tibco.com>
	<Pine.LNX.4.64.0910011128090.15444@raven.linux.ox.ac.uk>
Message-ID: <4AC4988B.9030302@fhcrc.org>

zong-pei.han at imm.ox.ac.uk wrote:
> So packages like beadarray and arrayQualityMetrics
> cannot be installed.

The sma author no longer wishes to maintain this package. The packges
beadarray and arrayQualityMetrics are Bioconductor packages that depend
on sma indirectly through other packages. The other packages are being
revised to no longer depend on sma, but this has not yet been completed.
The workaround is to manually install sma from its archive: download

  http://cran.fhcrc.org/src/contrib/Archive/sma/sma_0.5.15.tar.gz

and install.packages("sma_0.5.15.tar.gz", repos=NULL).

beadarray and arrayQualityMetrics are Bioconductor packages, so please
follow up on the Bioconductor mailing list

  http://bioconductor.org/docs/mailList.html

Martin



> 
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> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel


-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N.
PO Box 19024 Seattle, WA 98109

Location: Arnold Building M1 B861
Phone: (206) 667-2793



[Rd] Dependency 'sma' is not available
Martin Morgan