From aixtools at gmail.com  Fri Jan  8 17:34:36 2016
From: aixtools at gmail.com (Michael Felt)
Date: Fri, 08 Jan 2016 17:34:36 +0100
Subject: [Rd] R for AIX - guidance re: error messages requested
In-Reply-To: <568EF20F.8090606@gmail.com>
References: <568EF20F.8090606@gmail.com>
Message-ID: <568FE51C.40400@gmail.com>

On 2016-01-08 00:17, Michael Felt wrote:
> Hi all,
>
> With the bug in tre identified I am trying to move forward - one step 
> at a time.
Guess it is time to close testing via R-3.2.3. Next posts will be:
a) when I have time
b) based on R-devel

Have a good day all!

Michael
>
> As I am getting some errors that prevent make completing with version 
> 3.2.3, and R-devel introduces new issues (that I will face when I get 
> to them) I would appreciate some guidance with output of "make check" 
> (of 3.1.3) and the final message I run into when trying to build 
> 3.2.3. Maybe they are related, maybe not.
>
> In short - where should I be looking in more detail (e.g., with 
> debugger again), and are the errors possibly related to a library 
> (e.g., lzma/xz as it has been mentioned in other mails).
>
> make check
>
> root at x065:[/data/prj/cran/32/R-3.1.3.1]make check
> make[1]: Entering directory '/data/prj/cran/32/R-3.1.3.1/tests'
> make[2]: Entering directory '/data/prj/cran/32/R-3.1.3.1/tests'
> make[3]: Entering directory '/data/prj/cran/32/R-3.1.3.1/tests/Examples'
> Testing examples for package 'base'
> Error: testing 'base' failed
> Execution halted
> Makefile:33: recipe for target 'test-Examples-Base' failed
> make[3]: *** [test-Examples-Base] Error 1
> make[3]: Leaving directory '/data/prj/cran/32/R-3.1.3.1/tests/Examples'
> Makefile.common:166: recipe for target 'test-Examples' failed
> make[2]: *** [test-Examples] Error 2
> make[2]: Leaving directory '/data/prj/cran/32/R-3.1.3.1/tests'
> Makefile.common:154: recipe for target 'test-all-basics' failed
> make[1]: *** [test-all-basics] Error 1
> make[1]: Leaving directory '/data/prj/cran/32/R-3.1.3.1/tests'
> Makefile:236: recipe for target 'check' failed
> make: *** [check] Error 2
>
> Failing (64-bit) build of R-3.2.3
> begin installing recommended package MASS
> * installing *source* package 'MASS' ...
> ** package 'MASS' successfully unpacked and MD5 sums checked
> ** libs
>         xlc_r -qarch=pwr5 -I/home/cran/64/R/include -DNDEBUG 
> -I/usr/local/include      -g  -c MASS.c -o MASS.o
>         xlc_r -qarch=pwr5 -I/home/cran/64/R/include -DNDEBUG 
> -I/usr/local/include      -g  -c lqs.c -o lqs.o
> xlc_r -qarch=pwr5 -Wl,-brtl -Wl,-G -Wl,-bexpall -Wl,-bnoentry -lc 
> -L/home/cran/64/R/lib -L/opt/lib -liconv -o MASS.so MASS.o lqs.o -lm 
> -L/home/cran/64/R/lib -lR
> ld: 0711-224 WARNING: Duplicate symbol: p_xargc
> ld: 0711-224 WARNING: Duplicate symbol: p_xargv
> ld: 0711-224 WARNING: Duplicate symbol: p_xrcfg
> ld: 0711-224 WARNING: Duplicate symbol: p_xrc
> ld: 0711-224 WARNING: Duplicate symbol: end
> ld: 0711-224 WARNING: Duplicate symbol: .log
> ld: 0711-224 WARNING: Duplicate symbol: log
> ld: 0711-224 WARNING: Duplicate symbol: .sqrt
> ld: 0711-224 WARNING: Duplicate symbol: sqrt
> ld: 0711-224 WARNING: Duplicate symbol: guesses
> ld: 0711-224 WARNING: Duplicate symbol: .strcmp
> ld: 0711-224 WARNING: Duplicate symbol: strcmp
> ld: 0711-224 WARNING: Duplicate symbol: .isnan
> ld: 0711-224 WARNING: Duplicate symbol: isnan
> ld: 0711-224 WARNING: Duplicate symbol: .pow
> ld: 0711-224 WARNING: Duplicate symbol: pow
> ld: 0711-224 WARNING: Duplicate symbol: .exp
> ld: 0711-224 WARNING: Duplicate symbol: exp
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more 
> information.
> Target "all" is up to date.
> installing to /home/cran/64/R/library/MASS/libs
> ** R
> ** data
> *** moving datasets to lazyload DB
> Error in lazyLoadDBinsertVariable(vars[i], from, datafile, ascii, 
> compress,  :
>   internal error 5 in R_compress3
> ERROR: lazydata failed for package 'MASS'
> * removing '/home/cran/64/R/library/MASS'
> make: 1254-004 The error code from the last command is 1.
>
>
> Stop.
> make: 1254-004 The error code from the last command is 2.
>
>
> Stop.
> make: 1254-004 The error code from the last command is 2.
>
>
> Stop.
> cran at x068:[/home/cran/64/R]
>



[Rd] R for AIX - guidance re: error messages requested
Michael Felt