From arnaud.gaboury at gmail.com  Sat Dec  5 21:43:29 2015
From: arnaud.gaboury at gmail.com (arnaud gaboury)
Date: Sat, 05 Dec 2015 20:43:29 +0000
Subject: [Rd] R_PROFILE_USER
In-Reply-To: <97D19D40-B74E-48F5-8FFA-E8D10584E07F@gmail.com>
References: <CAK1hC9sf6Uehr10TZECun5KtQTQN==ArkfxhkHEXiHGbihgBCQ@mail.gmail.com>
	<97D19D40-B74E-48F5-8FFA-E8D10584E07F@gmail.com>
Message-ID: <CAK1hC9v3BdPbR=OJUB9FqtrM7e6yUdi5OT3eM5tv_FQ_NQhpLA@mail.gmail.com>

On Sat, Dec 5, 2015, 9:39 PM peter dalgaard <pdalgd at gmail.com> wrote:


> On 05 Dec 2015, at 18:07 , arnaud gaboury <arnaud.gaboury at gmail.com>
wrote:
>
> In my shell environment, I have set a path to R_PROFILE_USER. The
> file, Rprofile.R, is a collection of small hacks.
>
> I want to build rstudio-server from source. Best is to $ unset
> R_PROFILE_USER before. Unfortunately, this has no effect on my system.
>
> -----------------------------------------------
> poisonivy at poppy ?? ~ % R
>
> *** Successfully loaded .Rprofile ***
>
> Welcome back poisonivy
> working directory is: /home/poisonivy
> poisonivy at poppy [R]
> -------------------------------------
>
> As you can see, R is still behaving like the profile is used. What is
> annoying, is that Cmake will at one point not find my LibR. Error
> message: missing LIBR_LIBRARIES). The Cmake command is this one:
>
> -----------------------------------------
> % R --slave --no-save -e "cat(R.home('lib'))"
>
> *** Successfully loaded .Rprofile ***
>
> /usr/lib64/R/libGoodbye poisonivy Sat Dec  5 18:03:06 2015
> ----------------------------------------------
>
> and as you can see, the result is polluated by my profile. I can't
> edit Cmake file to add "--vanilla" as they are generated each time I
> start cmake.
>
> Even deleting my Rprofile.R file, the environment still persists. I
> have no idea why this behavior.
>
> Any hints why I can't unset my profile user ?

Umm, it said that it loaded .Rprofile, not Rprofile.R. Any chance that you
have similar code in two places? (~/.Rprofile and ./.Rprofile being the
most obvious suspects).

That is my first thought. As for the file, I made a typo in my post. It is
indeed Rprofile.r ( r lower case). That could explain the welcome message.


-pd

>
> Thank you.
> --
>
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>
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--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com

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[Rd] R_PROFILE_USER
arnaud gaboury