From simon.urbanek at r-project.org  Wed May 23 00:07:07 2012
From: simon.urbanek at r-project.org (Simon Urbanek)
Date: Tue, 22 May 2012 18:07:07 -0400
Subject: [Rd] Best way to locate R executable from within R?
In-Reply-To: <CAFDcVCSYxQgUTELOWG5DTFkMWhC1T5+6axem1ZzhV+EXinrhSQ@mail.gmail.com>
References: <CAFDcVCSbqCrF2hepKGC1n4BpdekBQcBg2B6+hSQFOZP9cgxq-g@mail.gmail.com>
	<CAP01uRm6PbqeKGUEM_rnTfWUbiZSpsfkE3Lqev30ATYEma5RNg@mail.gmail.com>
	<CAFDcVCSYxQgUTELOWG5DTFkMWhC1T5+6axem1ZzhV+EXinrhSQ@mail.gmail.com>
Message-ID: <2374E708-F3FF-4414-B730-6D157CBD12F6@r-project.org>

I think the most reliable solution is something like

system(paste(shQuote(file.path(R.home("bin"),"R")), ...))

it supports spaces in paths and works both on unix and Windows, picking the proper architecture.

Cheers,
Simon



On May 22, 2012, at 3:05 PM, Henrik Bengtsson wrote:

> On Tue, May 22, 2012 at 11:39 AM, Gabor Grothendieck
> <ggrothendieck at gmail.com> wrote:
>> On Tue, May 22, 2012 at 1:34 PM, Henrik Bengtsson <hb at biostat.ucsf.edu> wrote:
>>> Hi,
>>> 
>>> I'd like to spawn of a new R process from within R using system(),
>>> e.g. system("R -f myScript.R").  However, just specifying "R" as in
>>> that example is not guaranteed to work, because "R" may not be on the
>>> OS's search path.
>>> 
>>>  What is the best way, from within a running R, to infer the command
>>> (basename or full path) for launching R in way that it works on any
>>> OS?  I came up with the following alternatives, but I'm not sure if
>>> they'll work everywhere or not:
>>> 
>>> 1. Rbin <- commandArgs()[1];
>>> 
>>> 2. Rbin <- file.path(R.home(), "bin", "R");
>>> 
>>> Other suggestions that are better?
>>> 
>> 
>> At least on Windows one could run R via R.exe, Rterm.exe or Rgui.exe
>> amd #2 would not pick up the differences.  On the other hand if I do
>> this on the Windows command line on my Vista system with R 2.15.0
>> patched:
>> 
>> cd \program files\R\R-2.15.x\bin\i386
>> Rterm.exe
>> 
>> and then enter commandArgs() into R, the output is "Rterm.exe" with no path.
> 
> Thanks, I overlooked this need.  For my particular use case, I'm
> interested in launching R in "batch" mode, so "R" will do (but not
> "Rgui").
> 
>> 
>> The fact that one can have 32 bit and 64 bit R executables on the same
>> system complicates things too.
>> 
>> Thus, on Windows something like this might work:
>> 
>>   file.path(R.home("bin"), R.version$arch, basename(commandArgs()[[1]]))
>> 
>> If there are cases that I missed then this might pick up those too:
>> 
>>   R <- commandArgs()[[1]]
>>   if (R == basename(R)) R <- file.path(R.home("bin"), R.version$arch, R)
> 
> FYI, R.home("bin") is not the same as file.path(R.home(), "bin"), cf.
> help("R.home").  R.home("bin") will pick up the current architecture
> directory (by using .Platform$r_arch), e.g.
> 
>> R.home("bin")
> [1] "C:/PROGRA~1/R/R-2.15.0patched/bin/x64"
> 
> /Henrik
> 
>> 
>> --
>> Statistics & Software Consulting
>> GKX Group, GKX Associates Inc.
>> tel: 1-877-GKX-GROUP
>> email: ggrothendieck at gmail.com
>> 
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
> 
> 



[Rd] Best way to locate R executable from within R?
Simon Urbanek