From Thierry.ONKELINX at inbo.be  Tue Jul 30 12:34:32 2013
From: Thierry.ONKELINX at inbo.be (ONKELINX, Thierry)
Date: Tue, 30 Jul 2013 10:34:32 +0000
Subject: [Rd] Error from R CMD check
Message-ID: <AA818EAD2576BC488B4F623941DA7427CD31C519@inbomail.inbo.be>

Dear all,

I'm puzzled by the error I get from R CMD check one of my packages. I'm running R CMD check with the --as-cran flag and it get the error both from running it from the command line as from within Rstudio. On the same machine R CMD check on my GRTS package (https://r-forge.r-project.org/R/?group_id=1027) works fine.

Any suggestions on how to fix this? I can send the source code in a private email if required.

Best regards,

Thierry

Output from Rcmd.exe check --as-cran watervogels_0.3-27.tar.gz


* using log directory 'U:/svn2/watervogels/watervogels.Rcheck'
* using R version 3.0.1 Patched (2013-07-14 r63298)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'watervogels/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'watervogels' version '0.3-27'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Thierry Onkelinx <Thierry.Onkelinx at inbo.be>'
New submission
Non-FOSS package license (Private package of the Research Institute for Nature and
Forest)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'watervogels' can be installed ... ERROR
Installation failed.
See 'U:/svn2/watervogels/watervogels.Rcheck/00install.out' for details.

Exited with status 1.



Output from 00install.out

* installing *source* package 'watervogels' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning in Sys.junction(from, to) :
  cannot set reparse point 'C:\DOCUME~1\THIERR~2\LOCALS~1\Temp\RtmpMZUCyo\RLIBS_15585fa46d84/watervogels', reason 'De in de reparsepuntbuffer aanwezige gegevens zijn ongeldig'
Error in flink(normalizePath(pkgdir), tmplib) :
  cannot link from U:\svn2\watervogels\watervogels.Rcheck\00_pkg_src\watervogels
* removing 'U:/svn2/watervogels/watervogels.Rcheck/watervogels'

A translation of the error message: The data in the reparse point buffer are invalid.

ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature and Forest
team Biometrie & Kwaliteitszorg / team Biometrics & Quality Assurance
Kliniekstraat 25
1070 Anderlecht
Belgium
+ 32 2 525 02 51
+ 32 54 43 61 85
Thierry.Onkelinx at inbo.be
www.inbo.be

To call in the statistician after the experiment is done may be no more than asking him to perform a post-mortem examination: he may be able to say what the experiment died of.
~ Sir Ronald Aylmer Fisher

The plural of anecdote is not data.
~ Roger Brinner

The combination of some data and an aching desire for an answer does not ensure that a reasonable answer can be extracted from a given body of data.
~ John Tukey


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[Rd] Error from R CMD check
ONKELINX, Thierry