From pd@pubhealth.ku.dk  Sat Apr  7 06:15:06 2001
From: pd@pubhealth.ku.dk (Peter Dalgaard BSA)
Date: Sat, 7 Apr 2001 07:15:06 +0200
Subject: [Rd] Bug list summary (automatic post)
Message-ID: <200104070515.HAA20784@blueberry.kubism.ku.dk>

=================================================
This is an automated summary of the status of the R-bugs
repository.

Note that this may be neither complete nor perfectly
correct at any given instance: Not all bugs are reported,
and some reported bugs may have been fixed, but the
repository not yet updated.

Some bug fixes are difficult to verify because they pertain
to specific hardware or operating system versions. If you
have information to contribute, please do so.

If you happen to know how to fix a problem please send
patches to the bug repository, too.

New bugs are reported either through the web
interface at r-bugs.r-project.org or via email to
r-bugs@r-project.org. The bug.report() function can be
used to automate parts of the procedure on many systems.
Followups on older bugs can be done by including the string
"(PR#999)" in the Subject of an email (change 999 to the
actual reference number, of course!).
=================================================

Directory:  Accuracy

* PR# 751 *
Subject: BUG: polyroot()
From: "Li Dongfeng" <mavip1@inet.polyu.edu.hk>
Date: Tue, 28 Nov 2000 13:24:33 +0800
--Numerical instability. We may want a better algorithm!

Directory:  Add-ons

* PR# 824 *
Subject: trouble with netCDF 
From: jasont@indigoindustrial.co.nz
Date: Thu, 25 Jan 2001 12:00:39 +1300
--Only on a specific sample file: send to maintainer.
* PR# 496 *
From: bonneau@epi.roazhon.inra.fr (en148)
Date: Tue, 21 Mar 2000 10:57:13 +0100 (MET)
--base R has no est.variogram function.
--This appears to be a bug report on sgeostat.
* PR# 812 *
Subject: segmentation fault in integrate
From: Achim Zeileis <zeileis@ci.tuwien.ac.at>
Date: Thu, 11 Jan 2001 22:49:59 +0100
* PR# 781 *
Subject: syskern fails Rcmd check on Windows, gives incorrect information
From: Prof Brian Ripley <ripley@stats.ox.ac.uk>
Date: Wed, 20 Dec 2000 11:12:47 +0000 (GMT)
--Partially fixed by dse_2000.12, but still uses "ls" and gives
--incorrect information

Directory:  Analyses

* PR# 861 *
Subject: histogram of frequencies
From: bernd.winkler@genedata.com
Date: Mon, 5 Mar 2001 15:01:49 +0100 (MET)

Directory:  Documentation

* PR# 856 *
Subject: "}  {" problem in Rd files
From: Paul Gilbert <pgilbert@bank-banque-canada.ca>
Date: Mon, 26 Feb 2001 11:10:01 -0500

Directory:  Graphics

* PR# 865 *
Subject:  axis(...,las=1) breaks postscript code in certain cases 
From: maechler@stat.math.ethz.ch
Date: Wed, 7 Mar 2001 18:08:58 +0100
* PR# 202 *
Subject: persp box occlusion bug
From: wsi@gcal.ac.uk
Date: Wed, 2 Jun 1999 15:02:03 +0200 (MET DST)
--The persp algorithm does not apply the occlusion rules to the frame, 
--which is always plotted first. 
--A bug, but not very simple to fix.
* PR# 776 *
Subject: strwidth does not take font into account
From: Martyn Plummer <plummer@iarc.fr>
Date: Tue, 19 Dec 2000 14:56:01 +0100 (CET)
--This needs a substantial redesign.
* PR# 750 *
Subject: abline() does not obey "xpd" (clipping rules)
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Mon, 27 Nov 2000 18:27:11 +0100
* PR# 660 *
Subject: identify.default ignores any setting of cex.
From: Prof Brian Ripley <ripley@stats.ox.ac.uk>
Date: Fri, 15 Sep 2000 10:23:39 +0100 (BST)
* PR# 820 *
Subject: interaction.plot
From: "Mark M. Span" <span@psy.uva.nl>
Date: Mon, 22 Jan 2001 10:47:39 +0100
--mtext is unscaled by default.  It is not clear if this should
--use the par("cex") setting or an inline cex setting such as cex.axis.
--It might make more sense to use axis rather than mtext, as boxplot does.
* PR# 816 *
Subject: dotplot: character size of labels
From: RINNER Heinrich <H.RINNER@TIROL.GV.AT>
Date: Thu, 18 Jan 2001 14:54:32 +0100
--Suggested fix is incorporated in 1.2.2.
--
--There is a deeper problem:  mtext() ignores par(cex=.5) in general.  
--To see the problem try:  par(cex=.5); mtext("hi")
--Paul thinks the right fix is to change the argument list for mtext so that
--cex=par(cex) by default rather than cex=NA by default (plus corresponding
--internal changes to  do_mtext in plot.c).
--This needs to be done very carefully because (i) the change suggested above 
--mayhave side-effects in many other pieces of interpreted code 
--(ii) do_mtext ignores dd->gp.cexbase unlike, for example, do_plot_xy 
--and anything to do with cexbase needs extreme care.
* PR# 791 *
Subject:  par(lab= *) / axis(*) bug 
From: maechler@stat.math.ethz.ch
Date: Fri, 22 Dec 2000 10:59:26 +0100
* PR# 830 *
Subject: Disappearing x axis in plot.factor
From: Thomas Vogels <tov@ece.cmu.edu>
Date: 30 Jan 2001 00:27:13 -0500
* PR# 828 *
Subject: termplot fails for composite non-factor terms
From: John Maindonald <john.maindonald@anu.edu.au>
Date: Sat, 27 Jan 2001 11:57:37 +1100 (EST)
--Neither of the proposed changes actually works in sufficient generality.
--
--The easy and unimportant part of this, the labels, is fixed in 1.2.2. Getting
--the data right is a project for 1.3
* PR# 857 *
Subject: Plotting points on a filled.contour plot
From: marchini@stats.ox.ac.uk
Date: Tue, 27 Feb 2001 10:00:30 +0100 (MET)
--This needs at least to be documented, and preferably par("usr")
--set to the coordinate system of the plotting region after use.
* PR# 837 *
Subject: screen doesn't handle redrawing properly
From: Thomas Vogels <tov@ece.cmu.edu>
Date: 01 Feb 2001 14:20:52 -0500
* PR# 831 *
Subject: screen can't go back to (split) screen with log="y" plot
From: Thomas Vogels <tov@ece.cmu.edu>
Date: 30 Jan 2001 00:39:41 -0500

Directory:  In-Out

none

Directory:  Installation

none

Directory:  Language

* PR# 879 *
From: Duncan Murdoch <murdoch@stats.uwo.ca>
Date: Sun, 18 Mar 2001 07:45:13 -0500 (EST)
--precedence of %% appears to be not as documented
* PR# 408 *
Subject: convolution bug
From: wsimpson@gcal.ac.uk
Date: Fri, 28 Jan 2000 11:17:36 +0100 (MET)
* PR# 669 *
Subject: Bug(s) w/ rbind.data.frame(); fix also read.table(*, as.is = TRUE) ?
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Mon, 25 Sep 2000 10:17:15 +0200
--status of AsIs columns
* PR# 412 *
Subject: anomalies with call objects
From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk>
Date: 06 Feb 2000 01:18:50 +0100
* PR# 869 *
Subject:  inconsistent results when calling functions with other func
From: "White, Paul" <Paul.White@dsto.defence.gov.au>
Date: Thu, 8 Mar 2001 18:26:35 +1100 
* PR# 813 *
Subject: match.call problem
From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk>
Date: 12 Jan 2001 17:46:15 +0100

Directory:  Low-level

* PR# 505 *
Subject: interrupted save 
From: Thomas Lumley <thomas@biostat.washington.edu>
Date: Sat, 25 Mar 2000 12:16:50 -0800 (PST)

Directory:  Misc

* PR# 875 *
Subject: Re: [R] Bug in qchisq?
From: Peter Dalgaard BSA <p.dalgaard@biostat.ku.dk>
Date: 10 Mar 2001 02:26:11 +0100

Directory:  Models

* PR# 862 *
Subject: Wrong sign for Pearson residuals
From: faraway@umich.edu
Date: Mon, 5 Mar 2001 18:04:34 +0100 (MET)

Directory:  Startup

* PR# 486 *
Subject: Re: autoload error in profile {was anova-bug in R-version  1.0.0?}
From: Martin Maechler <maechler@stat.math.ethz.ch>
Date: Tue, 14 Mar 2000 10:32:43 +0100 (MET)
--workaround to the origin problem in 1.0.1
--New report: try does not work from the profile.

Directory:  System-specific

* PR# 863 *
Subject: src/main/arithmetic.c on OpenBSD
From: ian@darwinsys.com (Ian Darwin)
Date: Tue,  6 Mar 2001 19:49:53 -0500 (EST)
* PR# 851 *
Subject: Comments on R-1.2.1 builds
From: "Nelson H. F. Beebe" <beebe@math.utah.edu>
Date: Fri, 16 Feb 2001 17:44:17 -0700 (MST)
--These are only warnings: some have been eliminated for 1.2.2.
--Some are about constructs needed to satisfy other compilers.
--
--Also: configure problem with g77 on SGI.
* PR# 848 *
Subject: X11 device doesn't handle destroy events correcly
From: Thomas Vogels <tov@ece.cmu.edu>
Date: 13 Feb 2001 17:40:46 -0500

Directory:  TooMuchAtOnce

* PR# 811 *
Subject: problem with strptime example (and mention of bug.report)
From: Stephen Eglen <stephen@anc.ed.ac.uk>
Date: Thu, 11 Jan 2001 19:18:39 GMT
--1) On OSF4, strptime is deficient. Nothing we can do.
--
--2) On Windows NT, the strptime problems are (i) German locale, English dates,
--(ii) Windows system errors with unknown DST (it move times to DST).
--(i) now has another warning in the help file (there already was one).
--(ii) was already worked around for 1.2.1.
--
--3) bug.report() uses a mailer option that does not exist on OSF4.

Directory:  Windows

none

Directory:  incoming

* PR# 897 *
Subject:  bug in contour() ? 
From: kuensch@stat.math.ethz.ch
Date: Fri, 6 Apr 2001 16:21:24 +0200
* PR# 883 *
Subject: cor(x,y) when is.null(y)
From: "Charles C. Berry" <cberry@tajo.ucsd.edu>
Date: Fri, 23 Mar 2001 11:38:05 -0800 (PST)
* PR# 877 *
Subject: segmentation fault of unknown cause
From: Martin Schlather <Martin.Schlather@uni-bayreuth.de>
Date: Wed, 14 Mar 2001 17:45:25 +0100
* PR# 885 *
Subject: Problems with R CMD COMPILE within Makefile
From: Peter Holzer <holzer@stat.math.ethz.ch>
Date: Mon, 26 Mar 2001 15:32:00 +0200
* PR# 884 *
* PR# 887 *
Subject: axis(adj=anything) has no effect
From: jhallman@frb.gov
Date: Wed, 28 Mar 2001 20:51:05 +0200 (MET DST)
* PR# 886 *
Subject: Error (?) in documentation of 'swiss' data in R base package
From: k.j.mcconway@open.ac.uk
Date: Wed, 28 Mar 2001 16:46:49 +0200 (MET DST)
* PR# 889 *
Subject: na.omit()
From: devoilp@dpi.qld.gov.au
Date: Mon, 2 Apr 2001 03:17:20 +0200 (MET DST)
* PR# 888 *
Subject: User defined assignment function ignores argument names
From: jhallman@frb.gov
Date: Fri, 30 Mar 2001 23:03:08 +0200 (MET DST)
* PR# 891 *
Subject: Importing from Splus
From: ernesto@ipimar.pt
Date: Tue, 3 Apr 2001 17:03:06 +0200 (MET DST)
* PR# 890 *
Subject: aclocal.m4: R_PROG_F77_CC_COMPAT assumes executables w/o extension
From: hoffmann@ehmgs2.et.tu-dresden.de
Date: Mon, 2 Apr 2001 09:22:28 +0200 (MET DST)
* PR# 893 *
Subject: ghhfh
From: gfhjgq@yahoo.com
Date: Wed, 4 Apr 2001 12:12:02 +0200 (MET DST)
* PR# 892 *
Subject: rle() fails with NA's
From: jhallman@frb.gov
Date: Tue, 3 Apr 2001 21:52:44 +0200 (MET DST)
* PR# 896 *
Subject: Optimize: difference between R for Linux and Windows
From: "Marketa Kylouskova" <Marketa.Kylouskova@euromise.cz>
Date: 5 Apr 2001 12:30:29 +0100
* PR# 895 *
Subject: CI for wilcoxon test
From: kylouskova@euromise.cz
Date: Thu, 5 Apr 2001 11:02:47 +0200 (MET DST)
* PR# 894 *
Subject: ghhfh
From: gfhjgq@yahoo.com
Date: Wed, 4 Apr 2001 12:12:12 +0200 (MET DST)
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[Rd] Bug list summary (automatic post)
Peter Dalgaard BSA