From dtenenba at fhcrc.org  Thu Mar 21 17:59:08 2013
From: dtenenba at fhcrc.org (Dan Tenenbaum)
Date: Thu, 21 Mar 2013 09:59:08 -0700
Subject: [Rd] missing space in R version specifier makes PACKAGES file
 unreadable by install.packages()
In-Reply-To: <CAF42j21Hm4Vp=mB9wSgUeh=Ydf1KD4mkkVsYBq2jCoJJ3dZW0w@mail.gmail.com>
References: <CAF42j21Hm4Vp=mB9wSgUeh=Ydf1KD4mkkVsYBq2jCoJJ3dZW0w@mail.gmail.com>
Message-ID: <CAF42j22Sn66_hW5eQ+0Xc0VKFUs_zBN0rx3VqAKvuv9tagHS+w@mail.gmail.com>

On Thu, Mar 21, 2013 at 9:52 AM, Dan Tenenbaum <dtenenba at fhcrc.org> wrote:
> Hi,
>
> After updating to R-3.0 beta r62328, I get the following:
>
>> install.packages("Biobase", type="source", repos="http://george2/BBS/2.12/bioc")
> Error in do.call(op, list(v_c, v_t[[op]])) :
>   could not find function "R (>=2.15.1)"
>
> The problem can be fixed by adding a space after >= in the offending
> package's DESCRIPTION file and re-generating the PACKAGES file with
> tools:::write_PACKAGES().
>
> However, this worked OK in r62077.

Beg pardon, this did not work in r62077 either.

However I still think it's worth reporting.
Dan


> I'm not sure if >=2.15.1 (without
> the space) is valid syntax, but I wonder if R can be a bit more
> forgiving, as this issue derailed our daily builds.
>
>> sessionInfo()
> R version 3.0.0 alpha (2013-03-18 r62312)
> Platform: x86_64-apple-darwin10.8.0 (64-bit)
>
> locale:
> [1] C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> loaded via a namespace (and not attached):
> [1] tools_3.0.0
>
>
> Thanks,
> Dan



[Rd] missing space in R version specifier makes PACKAGES file unreadable by install.packages()
Dan Tenenbaum