From htl10 at users.sourceforge.net  Fri Feb 15 17:36:26 2013
From: htl10 at users.sourceforge.net (Hin-Tak Leung)
Date: Fri, 15 Feb 2013 16:36:26 +0000 (GMT)
Subject: [Rd] Matrix does not build with R trunk since Oct.
In-Reply-To: <76A856B2-3735-4D5E-AD86-5541BB52C93A@r-project.org>
Message-ID: <1360946186.76087.YahooMailClassic@web172301.mail.ir2.yahoo.com>

--- On Fri, 15/2/13, Simon Urbanek <simon.urbanek at r-project.org> wrote:

> On Feb 15, 2013, at 9:11 AM, Hin-Tak
> Leung wrote:
> 
> > Somebody else had written separately about this before,
> and so have I a couple of months ago. I assumed this will be
> fixed before the next R. Since R 3.0 is supposedly only 6
> weeks away, even if it is fixed now it doesn't leave much
> room for testing. 
> > 
> > Anyway neither Matrix 1.0-11 (current) nor 1.0-9 (sept
> 2012) build with current R trunk.? The? last time
> it did was 1. 0-9 on 3rd october over 4 months ago. So it
> appears to be due to change inside r trunk in sept or early
> oct. 
> > 
> 
> No problem here - Matrix 1.0-11 and R-devel build just fine
> with your flags (tested on Ubuntu 12.10, x86_64).
> 
> If in doubt, please remove R-devel and checkout a fresh
> copy. Also FWIW it's a bad practice to build inside the
> sources - it often causes all sorts of problems when you try
> to track the sources and stale files are probably what's
> hitting you.
> 
> FWIW: This is likely not the problem you're mentioning, but
> some recent gcc versions break and LTO is also known to
> cause issues depending on the compiler version, so tread
> lightly on the cutting edge.


Here is a fairly similar post:
http://r.789695.n4.nabble.com/Build-from-Source-fails-on-Loading-required-package-Matrix-td4640371.html

The eventual "solution" of that thread seems to be building from tar ball, which is quite beside the whole point of building from svn trunk.

FWIW, it is very unproductive to talk about "bad practice" - in a hand-waving undocumented/unsubstantiated manner - and options that might or might not work. If "--enable-lto" (or any other options, or build within the dev directory) does not work reliably, it should be either disabled/removed, or documented, or both. Anyway, it has not been working for over 4 months.

You have about 6 weeks before this becomes a big problem - "big" as in "wide-spread".

> Cheers,
> Simon
> 
> 
> > 
> > ----------------
> > Loading required package: Matrix
> > Error in namespaceExport(ns, exports) : undefined
> exports: .M.classEnv
> > Error : require(Matrix) is not TRUE
> > ERROR: installing package indices failed
> > * removing ?/svn-loc/R/library/Matrix?
> > * restoring previous ?/svn-loc/R/library/Matrix?
> > make[2]: *** [Matrix.ts] Error 1
> > make[2]: Leaving directory
> `/svn-loc/R/src/library/Recommended'
> > make[1]: *** [recommended-packages] Error 2
> > make[1]: Leaving directory
> `/svn-loc/R/src/library/Recommended'
> > make: *** [stamp-recommended] Error 2
> > ----------------
> > 
> > If it matters, here is what r trunk built with:
> > ./configure --enable-memory-profiling
> --enable-strict-barrier --enable-byte-compiled-packages
> --with-valgrind-instrumentation=2 --enable-lto
> > 
> > ______________________________________________
> > R-devel at r-project.org
> mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-devel
> 
>



[Rd] Matrix does not build with R trunk since Oct.
Hin-Tak Leung