From p.dalgaard at biostat.ku.dk  Sat Apr 26 09:38:53 2008
From: p.dalgaard at biostat.ku.dk (Peter Dalgaard)
Date: Sat, 26 Apr 2008 09:38:53 +0200
Subject: [Rd] Bug in R 2.7 for over long lines (crasher+proposed fix!)
 (PR#11281)
In-Reply-To: <20080425195509.5EFAF2834614@mail.pubhealth.ku.dk>
References: <20080425195509.5EFAF2834614@mail.pubhealth.ku.dk>
Message-ID: <4812DC0D.90800@biostat.ku.dk>

bugreports at nn7.de wrote:
> OK, I am just sending it here too as it looks like r-devel at r-project.org
> is not the right place:
>   
I think it was seen there too, just that noone got around to reply. In 
R-bugs, there's a filing system so that it won't be completely forgotten...

However, your mail seems to have gotten encoded in quoted-printable, you 
might want to follow up with a cleaned version. (Just keep the  
(PR#11281) in the header).
> =EF=BB=BFOn Fri, 2008-04-25 at 08:48 +0200, Soeren Sonnenburg wrote:
>   
>> While trying to fix swig & R2.7 I actually discovered that there is a
>> bug in R 2.7 causing a crash (so R & swig might actually work):
>> =20
>> the bug is in ./src/main/gram.c  line 3038:
>> =20
>>             } else { /* over-long line */
>> fixthis --> char *LongLine =3D (char *) malloc(nc);
>>             if(!LongLine)
>>                 error(_("unable to allocate space for source line %
>>     
> d"), xxlineno);
>   
>>             strncpy(LongLine, (char *)p0, nc);
>>  bug -->    LongLine[nc] =3D '\0';
>>             SET_STRING_ELT(source, lines++,
>>                        mkChar2((char *)LongLine));
>>             free(LongLine);
>> =20
>> note that LongLine is only nc chars long, so the LongLine[nc]=3D'\0'
>>     
> might
>   
>> be an out of bounds write. the fix would be to do
>> =20
>> =EF=BB=BF            char *LongLine =3D (char *) malloc(nc+1);
>> =20
>> in line 3034
>> =20
>> Please fix and thanks to dirk for the debian r-base-dbg package!
>>     
>
> Looking at the code again there seems to be another bug above this for
> the MAXLINESIZE test too:
>
>         if (*p =3D=3D '\n' || p =3D=3D end - 1) {
>             nc =3D p - p0;
>             if (*p !=3D '\n')
>             nc++;
>             if (nc <=3D MAXLINESIZE) {
>             strncpy((char *)SourceLine, (char *)p0, nc);
> bug2 -->    SourceLine[nc] =3D '\0';
>             SET_STRING_ELT(source, lines++,
>                        mkChar2((char *)SourceLine));
>             } else { /* over-long line */
>             char *LongLine =3D (char *) malloc(nc+1);
>             if(!LongLine)
>                 error(_("unable to allocate space for source line %d"),
> xxlineno);
> bug1 -->    strncpy(LongLine, (char *)p0, nc);
>             LongLine[nc] =3D '\0';
>             SET_STRING_ELT(source, lines++,
>                        mkChar2((char *)LongLine));
>             free(LongLine);
>             }
>             p0 =3D p + 1;
>         }
>
>
> So I guess the test would be for nc < MAXLINESIZE above or to change
> SourceLine to have MAXLINESIZE+1 size.
>
> Alternatively as the strncpy manpage suggests do this for all
> occurrences of strncpy
>
>            strncpy(buf, str, n);
>            if (n > 0)
>                buf[n - 1]=3D =E2=80=99\0=E2=80=99;
>
> this could even be made a makro / helper function ...
>
> And another update: This does fix the R+swig crasher for me (tested)!
>
> Soeren
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>   


-- 
   O__  ---- Peter Dalgaard             ?ster Farimagsgade 5, Entr.B
  c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
 (*) \(*) -- University of Copenhagen   Denmark      Ph:  (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)              FAX: (+45) 35327907



[Rd] Bug in R 2.7 for over long lines (crasher+proposed fix!) (PR#11281)
Peter Dalgaard