From ripley at stats.ox.ac.uk  Wed Feb 13 15:01:54 2008
From: ripley at stats.ox.ac.uk (Prof Brian Ripley)
Date: Wed, 13 Feb 2008 14:01:54 +0000 (GMT)
Subject: [Rd] Perils of R_LIBRARY_PATH
Message-ID: <Pine.LNX.4.64.0802131346450.10778@auk.stats>

The R front end sets (via etc/ldpath) R_LIBRARY_PATH, including 
R_JAVA_LD_LIBRARY_PATH.  Perhaps the later is too obliging, as I've just 
be caught by it in a way that took me a while to track down.

One of my machines has a Sun jdk1.6.0* JDK installed, and as a result
we have

${R_JAVA_LD_LIBRARY_PATH=${JAVA_HOME}/lib/amd64/server:${JAVA_HOME}/lib/amd64:
${JAVA_HOME}/../lib/amd64}

What I was not aware of was that the Sun JDK contains Gtk+ libraries such 
as cairo and pango, and those were older than the ones whose headers I 
had compiled against which eventually resulted in a crash.

It seems to be an issue only for a JDK: perhaps Simon can tweak his 
incantations to use only the JRE library path (and avoid the 
'../lib/amd64' above)?

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595



[Rd] Perils of R_LIBRARY_PATH
Prof Brian Ripley