From ripley at stats.ox.ac.uk  Tue Jun  7 08:51:39 2005
From: ripley at stats.ox.ac.uk (Brian D Ripley)
Date: Tue Jun  7 08:51:52 2005
Subject: [Rd] Re: update.packages keeps trying to update gregmisc
In-Reply-To: <971536df0506062235585d5d8c@mail.gmail.com>
Message-ID: <Pine.GSO.4.31.0506070746130.5981-100000@markov.stats>

This is due to the inconsistent way gregmisc has been unbundled.  There
was a gregmisc 2.0-7 containing gplots etc as part of a bundle, and there
are also versions of gplots etc *with the same version number* which are
not part of a bundle.

The only way out I have found is to remove gregmisc and, if necessary, its
former component packages, and then re-install gplots etc.

On Tue, 7 Jun 2005, Gabor Grothendieck wrote:

> One other point I just noticed.  If I run new.packages() it reports this,
> namely that gregmisc has extra contents of NA.
>
> > np <- new.packages()
> --- Please select a CRAN mirror for use in this session ---
> Warning messages:
> 1: bundle 'VR' is incompletely installed in: new.packages()
> 2: bundle 'VR' has extra contents 'nnet' in: new.packages()
> 3: bundle 'gregmisc' is incompletely installed in: new.packages()
> 4: bundle 'gregmisc' has extra contents 'NA' in: new.packages()
>
> On 6/6/05, Gabor Grothendieck <ggrothendieck@gmail.com> wrote:
> > If I issue the command
> > > update.packages()
> > it wants to update 'gregmisc' but then if I do it again right afterwards it
> > still wants to update 'gregmisc'.  It should have updated everything
> > the first time and should not be trying to update anything the second
> > time.  Any comments?
> >
> > Here is the transcript of a session (R version at end):
> >
> >
> > > update.packages()
> > gregmisc :
> >  Version 2.0.7 installed in C:/PROGRA~1/R/RW2010~1/library
> >  Version 2.0.8 available at http://probability.ca/cran
> > Update (y/N/c)?  y
> > trying URL 'http://probability.ca/cran/bin/windows/contrib/2.1/gregmisc_2.0.8.zip'
> > Content type 'application/zip' length 2465 bytes
> > opened URL
> > downloaded 2465 bytes
> >
> > package 'gregmisc' successfully unpacked and MD5 sums checked
> >
> > The downloaded packages are in
> >        C:\Documents and Settings\Grothendieck\Local
> > Settings\Temp\Rtmp9430\downloaded_packages
> > updating HTML package descriptions
> > > update.packages()
> > gregmisc :
> >  Version 2.0.7 installed in C:/PROGRA~1/R/RW2010~1/library
> >  Version 2.0.8 available at http://probability.ca/cran
> > Update (y/N/c)?  y
> > trying URL 'http://probability.ca/cran/bin/windows/contrib/2.1/gregmisc_2.0.8.zip'
> > Content type 'application/zip' length 2465 bytes
> > opened URL
> > downloaded 2465 bytes
> >
> > package 'gregmisc' successfully unpacked and MD5 sums checked
> >
> > The downloaded packages are in
> >        C:\Documents and Settings\Grothendieck\Local
> > Settings\Temp\Rtmp9430\downloaded_packages
> > updating HTML package descriptions
> > > R.version.string # Windows XP
> > [1] "R version 2.1.0, 2005-05-14"
> >
>
> ______________________________________________
> R-devel@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>

-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595


[Rd] Re: update.packages keeps trying to update gregmisc
Brian D Ripley