From nabble.30.miller_2555 at spamgourmet.com  Mon Nov 16 02:25:27 2009
From: nabble.30.miller_2555 at spamgourmet.com (nabble.30.miller_2555 at spamgourmet.com)
Date: Sun, 15 Nov 2009 20:25:27 -0500
Subject: [Rd] Segmentation faults on SEXP conversion
Message-ID: <1dd941090911151725w31deb09y354e968b5326c947@mail.gmail.com>

On Sun, Nov 15, 2009 at 2:52 PM, Duncan Murdoch - murdoch at stats.uwo.ca
<+nabble+miller_2555+1412c7fca2.murdoch#stats.uwo.ca at spamgourmet.com>
wrote:
> On 15/11/2009 1:41 PM, nabble.30.miller_2555 at spamgourmet.com wrote:
>>
> The "character" type in R corresponds to STRSXP in C, which is a vector of
> CHARSXPs. ?So you need an extra step to get to the C string:
>
> const char * omsg = CHAR(STRING_ELT(msg, 0));
>
> Duncan Murdoch
>

Thank you for the suggestion. I have replaced the code as suggested,
but I had attempted this conversion earlier. Unfortunately, I still
receive the same segmentation fault (and backtrace). The underlying
problem no longer appears to relate to type conversion. The following
code represents the entirety of the extension's R and C code (and
NAMESPACE file), and still causes the segmentation fault:

NAMESPACE:
---------------------------------------------------
useDynLib("tstlib")
export( "ptest" )


ptest.R:
---------------------------------------------------
ptest <- function()  { .Call("Rwrite", PACKAGE="tstlib");};


ptest.c:
---------------------------------------------------
#include <R.h>
void Rwrite() { printf("[%i] %s",12,"Hi"); }


ptest.R:
---------------------------------------------------
ptest <- function()  { .Call("Rwrite", PACKAGE="tstlib");};


zzz.R:
---------------------------------------------------
.onLoad <- function(libname, pkgname)
{
}
.onUnload <- function(libpath) {
    library.dynam.unload("forkex", libpath)
  }


This is just about the most simple example I can think of, and don't
really know why it would segfault (if I change the interface in
ptest.R above from .Call to .C, no segfault occurs). The following is
the output from `R CMD SHLIB ptest.c`:

gcc -m64 -std=gnu99 -I/usr/include/R  -I/usr/local/include    -fpic
-O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions
-fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c
ptest.c -o ptest.o
gcc -m64 -std=gnu99 -shared -L/usr/local/lib64 -o ptest.so ./ptest.o
-L/usr/lib64/R/lib -lR



[Rd] Segmentation faults on SEXP conversion
nabble.30.miller_2555 at spamgourmet.com