From patrick.giraudoux at univ-fcomte.fr  Sun Oct 16 11:27:34 2011
From: patrick.giraudoux at univ-fcomte.fr (Patrick Giraudoux)
Date: Sun, 16 Oct 2011 11:27:34 +0200
Subject: [Rd] Error in gzfile(file,
 mode) when checking a package with  rcmd check
In-Reply-To: <4E9A9D8E.1090304@univ-fcomte.fr>
References: <4E9A8CDF.70801@univ-fcomte.fr> <4E9A9D8E.1090304@univ-fcomte.fr>
Message-ID: <4E9AA386.7010008@univ-fcomte.fr>

Also have just tried to build the package with no preliminary check. The 
package apparently builds OK, tar.gz as well as binary .zip. Really 
looks like the error has to do with the rcmd check command 
specifically... May it be a bug ? Suppose I am not the only one to have 
checked a package since R 2.13.2 has been delivered ?

Patrick


Le 16/10/2011 11:02, Patrick Giraudoux a ?crit :
> PS: looks like if it has something to do with moving from R 2.13.1 to 
> R 2.13.2, since I cannot even check earlier versions of the pgirmess 
> package that where well checked and compiled under earlier R versions.
>
>
> Le 16/10/2011 09:50, Patrick Giraudoux a ?crit :
>> Hi,
>>
>> For the first time I have a strange behaviour when checking a package 
>> before 'packaging' the code. Looks like a file cannot be read.
>>
>> rcmd check pgirmess
>>
>> * using log directory 'U:/Documents and Settings/pgiraudo/Mes 
>> documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck'
>> * using R version 2.13.2 (2011-09-30)
>> * using platform: i386-pc-mingw32 (32-bit)
>> * using session charset: ISO8859-1
>> * checking for file 'pgirmess/DESCRIPTION' ... OK
>> * this is package 'pgirmess' version '1.5.2'
>> * checking package dependencies ... OK
>> * checking if this is a source package ... OK
>> * checking for .dll and .exe files ... OK
>> * checking whether package 'pgirmess' can be installed ... ERROR
>> Installation failed.
>> See 'U:/Documents and Settings/pgiraudo/Mes 
>> documents/R/pgir_arch/pgirmess_arch/On 
>> work/pgirmess.Rcheck/00install.out' for details.
>>
>>
>> In '00install.out',  I get:
>>
>> * installing *source* package 'pgirmess' ...
>> ** R
>> ** data
>> ** preparing package for lazy loading
>> ** help
>> *** installing help indices
>> ** building package indices ...
>> ** testing if installed package can be loaded Error in gzfile(file, 
>> mode) : cannot open the connection
>> Calls: %in% -> match -> installed.packages -> saveRDS -> gzfile
>> In addition: Warning message:
>> In gzfile(file, mode) :
>>   cannot open compressed file 
>> 'U:\DOCUME~1\Admin\LOCALS~1\Temp\RtmpwWcmem/libloc_U%3a%2fDocuments%20and%20Settings%2fpgiraudo%2fMes%20documents%2fR%2fpgir_arch%2fpgirmess_arch%2fOn%20work%2fpgirmess.RcheckVersion,Priority,Depends,Imports,LinkingTo,Suggests,Enhances,OS_type,License,Archs,Built.rds', 
>> probable reason 'No such file or directory'
>> Execution halted
>> ERROR: loading failed
>> * removing 
>> 'U:/DOCUME~1/pgiraudo/MESDOC~1/R/PGIR_A~1/PGIRME~1/ONWORK~1/PGIRME~1.RCH/pgirmess'
>>
>> Any hint welcome ! I am stuck on that.
>>
>> Patrick
>



[Rd] Error in gzfile(file, mode) when checking a package with rcmd check
Patrick Giraudoux