From hpbenton at scripps.edu  Fri Nov 27 03:03:47 2009
From: hpbenton at scripps.edu (Homer Paul Benton)
Date: Thu, 26 Nov 2009 18:03:47 -0800
Subject: [Rd] compiling on snow leopard: Cocoa errors?!?!?!
In-Reply-To: <7434A156-7BF1-4022-811C-E2184A5D79B7@r-project.org>
References: <DEBDCAAC-5571-4B11-A787-8CAEA2171C7B@scripps.edu>
	<7434A156-7BF1-4022-811C-E2184A5D79B7@r-project.org>
Message-ID: <6B517824-FDB9-4907-99EA-0539AA59DF3D@scripps.edu>

Simon,

I'm currently using 

gcc --version
i686-apple-darwin8-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5564)
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

sh-3.2# gfortran --version
GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5564)
Copyright (C) 2007 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING


and xcode 3.2 (1610)

At the risk of sounding stupid, I compiled the netCDF library and the compiliers seemed happy for that. ?!?!

Cheers,

Paul

I downloaded and 'installed' the 

On 27 Nov 2009, at 00:54, Simon Urbanek wrote:

> Paul,
> 
> at a first glance that seems like an issue in your system to me since  
> the errors come from system headers and not from our code. Which  
> compilers are you using and which Xcode version?
> 
> Cheers,
> Simon
> 
> 
> On Nov 26, 2009, at 1:16 PM, Homer Paul Benton wrote:
> 
>> Dear R-gurus,
>> 
>> I'm trying to compile R on my new mac. It's snow leopard. So far  
>> I've seemed to be doing pretty well. I've looked at
>> 
>> http://cran.r-project.org/bin/macosx/tools/
>> 
>> http://r.research.att.com/exp/
>> 
>> http://r.research.att.com/building.html
>> 
>> http://r.research.att.com/tools/
>> 
>> All of which have been very helpful. Looking at the threads I've got  
>> around some X11 issues that stopped the configure script working but  
>> now when I excute make I get the error below. Any ideas?
>> 
>> Thanks in advance,
>> 
>> Paul
>> 
>> R is now configured for i386-apple-darwin10.2.0
>> 
>> Source directory:          .
>> Installation directory:    /Library/Frameworks
>> 
>> C compiler:                gcc -arch x86_64 -std=gnu99  -g -O2
>> Fortran 77 compiler:       gfortran -arch x86_64  -g -O2
>> 
>> C++ compiler:              g++ -arch x86_64  -g -O2
>> Fortran 90/95 compiler:    gfortran -arch x86_64 -g -O2
>> Obj-C compiler:	     gcc -arch x86_64 -g -O2
>> 
>> Interfaces supported:      X11, aqua, tcltk
>> External libraries:        readline, BLAS(vecLib), LAPACK(in blas),  
>> ICU
>> Additional capabilities:   NLS
>> Options enabled:           framework, R profiling, Java
>> 
>> Recommended packages:      yes
>> 
>> sh-3.2# echo "./configure SHELL='/bin/bash' r_arch=x86_64 CC="gcc - 
>> arch x86_64 -std=gnu99" CXX="g++ -arch x86_64" OBJC="gcc -arch  
>> x86_64" F77="gfortran -arch x86_64" FC="gfortran -arch x86_64" -- 
>> with-system-zlib --with-blas='-framework vecLib' --with-lapack --x- 
>> includes='-I/usr/X11/include/X11' --x-libraries='-L/usr/X11/lib'  
>> X_LIBS=-L/usr/X11/lib" > ~/R/compileR.txt
>> 
>> 
>> sh-3.2# make
>> make[1]: Nothing to be done for `R'.
>> make[1]: Nothing to be done for `R'.
>> make[2]: Nothing to be done for `R'.
>> .....
>> ..... etc
>> building package 'tools'
>> all.R is unchanged
>> make[6]: `Makedeps' is up to date.
>> ../../../../library/tools/libs/x86_64/tools.so is unchanged
>> building package 'utils'
>> all.R is unchanged
>> make[4]: Nothing to be done for `iconvlist'.
>> building package 'grDevices'
>> all.R is unchanged
>> ../../../library/grDevices/R/grDevices is unchanged
>> gcc -arch x86_64 -I../../../../include -I../../../../include/x86_64 - 
>> I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/ 
>> local/include   -fPIC  -g -O2 -c qdCocoa.m -o qdCocoa.o
>> In file included from /System/Library/Frameworks/ 
>> Foundation.framework/Headers/NSCharacterSet.h:8,
>>               from /System/Library/Frameworks/Foundation.framework/ 
>> Headers/Foundation.h:15,
>>               from /System/Library/Frameworks/Cocoa.framework/ 
>> Headers/Cocoa.h:12,
>>               from qdCocoa.h:39,
>>               from qdCocoa.m:24:
>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: 
>> 278: error: format string argument follows the args to be formatted
>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: 
>> 280: error: format string argument follows the args to be formatted
>> In file included from /System/Library/Frameworks/ 
>> Foundation.framework/Headers/Foundation.h:25,
>>               from /System/Library/Frameworks/Cocoa.framework/ 
>> Headers/Cocoa.h:12,
>>               from qdCocoa.h:39,
>>               from qdCocoa.m:24:
>> /System/Library/Frameworks/Foundation.framework/Headers/ 
>> NSException.h:62: error: format string argument follows the args to  
>> be formatted
>> qdCocoa.m: In function '+[QuartzCocoaView  
>> quartzWindowWithRect:andInfo:]':
>> qdCocoa.m:90: warning: class 'QuartzCocoaView' does not implement  
>> the 'NSWindowDelegate' protocol
>> make[5]: *** [qdCocoa.o] Error 1
>> make[4]: *** [mksrc] Error 1
>> make[3]: *** [all] Error 2
>> make[2]: *** [R] Error 1
>> make[1]: *** [R] Error 1
>> make: *** [R] Error 1
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>> 
>> 
> 



[Rd] compiling on snow leopard: Cocoa errors?!?!?!
Homer Paul Benton