From cstrato at aon.at  Sat Apr 23 21:50:55 2011
From: cstrato at aon.at (cstrato)
Date: Sat, 23 Apr 2011 21:50:55 +0200
Subject: [Rd] How to create vignette.pdf for R-2.13.0?
Message-ID: <4DB32D9F.5010406@aon.at>

Dear all,

While R CMD check and R CMD INSTALL have always created the vignettes on 
R-2.12.1 or any earlier versions of R, I am no longer able to build the 
vignettes on R-2.13.0.

Instead R CMD check gives me the following output:

* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
    APTvsXPS.Rnw
    xps.Rnw
    xpsClasses.Rnw
    xpsPreprocess.Rnw

* checking running R code from vignettes ... OK
* checking re-building of vignettes ... OK
* checking PDF version of manual ... OK


Does someone know what the reason might be?

(R64 CMD check --help says that be default rebuild-vignettes is turned on.)

Interestingly, R CMD check still creates the file "xps-manual.pdf".

Here is my sessionInfo:

 > sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)

locale:
[1] C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] xps_1.13.1

loaded via a namespace (and not attached):
[1] Biobase_2.12.1        Biostrings_2.20.0     IRanges_1.10.0
[4] affy_1.30.0           affyPLM_1.28.5        affyio_1.20.0
[7] preprocessCore_1.14.0

Thank you in advance.
Best regards
Christian
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[Rd] How to create vignette.pdf for R-2.13.0?
cstrato