From rhurlin at gwdg.de  Wed Jan 21 11:50:51 2009
From: rhurlin at gwdg.de (Rainer Hurling)
Date: Wed, 21 Jan 2009 11:50:51 +0100
Subject: [Rd] Package Matrix does not compile in R-devel_2009-01-10
In-Reply-To: <496A6F24.7050403@gwdg.de>
References: <496A6F24.7050403@gwdg.de>
Message-ID: <4976FE0B.2070309@gwdg.de>

Just some feedback for the record.

Since version R-devel_2009-01-20.tar.gz with Matrix_0.999375-18.tar.gz 
included I am able again to compile and install R on FreeBSD 8.0-CURRENT 
out of the box.

Many thanks to Martin Maechler and Brian Ripley for the help and work,

Rainer Hurling


Am 11.01.2009 23:13 (UTC+1) schrieb Rainer Hurling:
> Dear developers,
> 
> today I tried to build and install R-devel_2009-01-10 on FreeBSD 
> 8.0-CURRENT (i386) for testing purposes.
> 
> All went well until compiling the now recommended (integrated) Matrix 
> package. At this point the following break occured:
> 
> ------------------------------------------------
> begin installing recommended package Matrix
> * Installing *source* package 'Matrix' ...
> ** libs
> gcc -std=gnu99 -I/usr/local/R-devel/include -I./UFconfig 
> -I/usr/local/include    -fpic  -g -O2 -c CHMfactor.c -o CHMfactor.o
> [..snip..]
> gcc -std=gnu99 -I/usr/local/R-devel/include -I../Include 
> -I../../UFconfig -I/usr/local/include    -fpic  -g -O2 -c 
> colamd_global.c -o colamd_global.o
> gcc -std=gnu99 -I/usr/local/R-devel/include -I../Include 
> -I../../UFconfig -I/usr/local/include    -fpic  -g -O2 -I../Include 
> -DDLONG -c colamd.c -o colamd_l.o
> ar -rucs ../../COLAMD.a colamd_global.o colamd_l.o # colamd.o
> ( cd Source ; make lib )
> gcc -std=gnu99 -I/usr/local/R-devel/include -I../Include 
> -I../../UFconfig -I/usr/local/include    -fpic  -g -O2 -c amd_global.c 
> -o amd_global.o
> make: don't know how to make amd_l_1.o. Stop
> *** Error code 2
> Stop in /tmp/Rtmpx5nUS8/R.INSTALL10d63af1/Matrix/src/AMD.
> *** Error code 1
> Stop in /tmp/Rtmpx5nUS8/R.INSTALL10d63af1/Matrix/src.
> ERROR: compilation failed for package 'Matrix'
> * Removing '/usr/local/R-devel/library/Matrix'
> *** Error code 1
> Stop in /usr/local/R-devel/src/library/Recommended.
> *** Error code 1
> Stop in /usr/local/R-devel/src/library/Recommended.
> *** Error code 1
> Stop in /usr/local/R-devel.
> ------------------------------------------------
> 
> 
> Please note, that on FreeBSD there is a BSD 'make' as default. If I want 
> to use gmake instead, I explicitly have to set it. Unfortunately this 
> does not work within building the whole R-devel system.
> 
> With R-2.8.1 I have no problems installing and using R. When I want to 
> build the (external) Matrix package I have to set an environment 
> variable to gmake, found at /usr/local/bin/gmake and all works well.
> 
> 
> Now my question: Is it possible to change the configure/build of the 
> integrated Matrix package on R-devel? For all other packages there is no 
> need to do so (at least for FreeBSD ;-)
> 
> Please let me know if I can help.
> 
> Thanks in advance,
> Rainer Hurling



[Rd] Package Matrix does not compile in R-devel_2009-01-10
Rainer Hurling