From hpages at fhcrc.org  Fri Dec  2 02:40:34 2011
From: hpages at fhcrc.org (=?ISO-8859-1?Q?Herv=E9_Pag=E8s?=)
Date: Thu, 01 Dec 2011 17:40:34 -0800
Subject: [Rd] 1.6x speedup for requal() function (in R/src/main/unique.c)
Message-ID: <4ED82C92.3010207@fhcrc.org>

Hi,

FWIW:

/* Taken from R/src/main/unique.c */
static int requal(SEXP x, int i, SEXP y, int j)
{
     if (i < 0 || j < 0) return 0;
     if (!ISNAN(REAL(x)[i]) && !ISNAN(REAL(y)[j]))
         return (REAL(x)[i] == REAL(y)[j]);
     else if (R_IsNA(REAL(x)[i]) && R_IsNA(REAL(y)[j])) return 1;
     else if (R_IsNaN(REAL(x)[i]) && R_IsNaN(REAL(y)[j])) return 1;
     else return 0;
}

/* Between 1.34x and 1.37x faster on my 64-bit Ubuntu laptop */
static int requal2(SEXP x, int i, SEXP y, int j)
{
     double xi, yj;

     if (i < 0 || j < 0) return 0;
     xi = REAL(x)[i];
     yj = REAL(y)[j];
     if (!ISNAN(xi) && !ISNAN(yj)) return xi == yj;
     if (R_IsNA(xi) && R_IsNA(yj)) return 1;
     if (R_IsNaN(xi) && R_IsNaN(yj)) return 1;
     return 0;
}

/* Another extra 1.18x speedup. So overall requal3() is about 1.6x
    faster than requal() for me. requal3() uses a simpler logic than
    requal() but this logic should be equivalent to the logic used
    by requal(), based on the following facts:
      (a) If *one* of xi or yi is a number (i.e. not NA or NaN),
          then xi and yi can be compared with xi == yi. They don't
          need to *both* be numbers for this comparison to be valid.
      (b) Otherwise (i.e. if each of them is not a number) then each
          of them is either NA or NaN (only 2 possible values for
          each), so comparing them with R_IsNA(xi) == R_IsNA(yj)
          should do the trick. */
static int requal3(SEXP x, int i, SEXP y, int j)
{
     double xi, yj;

     if (i < 0 || j < 0) return 0;
     xi = REAL(x)[i];
     yj = REAL(y)[j];
     if (!ISNAN(xi) || !ISNAN(yj)) return xi == yj;
     return R_IsNA(xi) == R_IsNA(yj);
}

The logic of the cequal() function (in the same file) could also be
cleaned up in a similar way, probably for an even greater speedup.

This will benefit duplicated(), anyDuplicated() and unique() on numeric
and complex vectors.

Cheers,
H.

-- 
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fhcrc.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319



[Rd] 1.6x speedup for requal() function (in R/src/main/unique.c)
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