From tlumley at u.washington.edu  Mon Jun 12 17:39:15 2006
From: tlumley at u.washington.edu (Thomas Lumley)
Date: Mon, 12 Jun 2006 08:39:15 -0700 (PDT)
Subject: [Rd] Ruuid had non-zero exit status (PR#8965)
In-Reply-To: <20060612131159.960A64C89E@slim.kubism.ku.dk>
References: <20060612131159.960A64C89E@slim.kubism.ku.dk>
Message-ID: <Pine.LNX.4.64.0606120838530.19806@homer21.u.washington.edu>


Ruuid is a Bioconductor package; please report bugs to Bioconductor as 
they ask.

 	-thomas

On Mon, 12 Jun 2006, zph at herald.ox.ac.uk wrote:

>> source("http://www.bioconductor.org/biocLite.R")
>> biocLite(c("Ruuid"))
> Running getBioC version 0.1.6 with R version 2.3.1
> Running biocinstall version 1.8.4 with R version 2.3.1
> Your version of R requires version 1.8 of Bioconductor.
> trying URL
> 'http://bioconductor.org/packages/1.8/bioc/src/contrib/Ruuid_1.10.0.tar.gz'
> Content type 'application/x-gzip' length 72767 bytes
> opened URL
> ==================================================
> downloaded 71Kb
>
> * Installing *source* package 'Ruuid' ...
> checking for pkg-config... /usr/local/bin/pkg-config
> checking for glib-config... /usr/local/bin/glib-config
> checking for glib-2.0... yes
> checking PKG_CFLAGS... -I/usr/local/include/glib-2.0
> -I/usr/local/lib/glib-2.0/include
> checking PKG_LIBS... -L/usr/local/lib -lglib-2.0 -liconv
> checking for gcc... gcc
> checking for C compiler default output file name... a.out
> checking whether the C compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ANSI C... none needed
> checking how to run the C preprocessor... gcc -E
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... no
> checking for unistd.h... yes
> checking /usr/include/unistd.h usability... yes
> checking /usr/include/unistd.h presence... yes
> checking for /usr/include/unistd.h... yes
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> gcc -I/package/R/2.3.1/lib/R/include -I/package/R/2.3.1/lib/R/include
> -I/usr/local/include  -I/ usr/local/include/glib-2.0
> -I/usr/local/lib/glib-2.0/include   -DHAVE_UNISTD_H=1 -fPIC  -O2 -D_F
> ILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -c Rinit.c -o Rinit.o
> In file included from /usr/local/include/glib-2.0/glib/galloca.h:30,
>                  from /usr/local/include/glib-2.0/glib.h:30,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gtypes.h:41: error: syntax error before
> "typedef"
> In file included from /usr/local/include/glib-2.0/glib.h:31,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/garray.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/garray.h:34: error: syntax error before
> "typedef"
> In file included from /usr/local/include/glib-2.0/glib/gerror.h:24,
>                  from /usr/local/include/glib-2.0/glib/gthread.h:30,
>                  from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30,
>                  from /usr/local/include/glib-2.0/glib.h:32,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gquark.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gquark.h:34: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gquark.h:41: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gquark.h:41: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gquark.h:41: warning: data definition has
> no type or storage cl ass
> In file included from /usr/local/include/glib-2.0/glib/gthread.h:30,
>                  from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30,
>                  from /usr/local/include/glib-2.0/glib.h:32,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gerror.h:26: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gerror.h:28: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gerror.h:40: error: parse error before
> "G_GNUC_PRINTF"
> /usr/local/include/glib-2.0/glib/gerror.h:40: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gerror.h:60: error: parse error before
> "G_GNUC_PRINTF"
> /usr/local/include/glib-2.0/glib/gerror.h:60: warning: data definition has
> no type or storage cl ass
> In file included from /usr/local/include/glib-2.0/glib/gthread.h:32,
>                  from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30,
>                  from /usr/local/include/glib-2.0/glib.h:32,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gatomic.h:35: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gatomic.h:37: error: syntax error before
> "gint"
> In file included from /usr/local/include/glib-2.0/glib/gasyncqueue.h:30,
>                  from /usr/local/include/glib-2.0/glib.h:32,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gthread.h:34: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gthread.h:39: error: syntax error before
> "extern"
> /usr/local/include/glib-2.0/glib/gthread.h:255: error: parse error before
> "GSystemThread"
> /usr/local/include/glib-2.0/glib/gthread.h:255: warning: no semicolon at
> end of struct or union
> In file included from /usr/local/include/glib-2.0/glib.h:32,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gasyncqueue.h:32: error: parse error
> before "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gasyncqueue.h:34: error: syntax error
> before "typedef"
> In file included from /usr/local/include/glib-2.0/glib.h:34,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gbacktrace.h:32: error: parse error
> before "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gbacktrace.h:43: error: syntax error
> before "void"
> In file included from /usr/local/include/glib-2.0/glib/glist.h:30,
>                  from /usr/local/include/glib-2.0/glib/gcache.h:30,
>                  from /usr/local/include/glib-2.0/glib.h:35,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gmem.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gmem.h:34: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gmem.h:48: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gmem.h:48: warning: data definition has
> no type or storage clas s
> /usr/local/include/glib-2.0/glib/gmem.h:49: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gmem.h:49: warning: data definition has
> no type or storage clas s
> /usr/local/include/glib-2.0/glib/gmem.h:53: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gmem.h:53: warning: data definition has
> no type or storage clas s
> /usr/local/include/glib-2.0/glib/gmem.h:74: error: parse error before
> "n_bytes"
> /usr/local/include/glib-2.0/glib/gmem.h:76: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gmem.h:79: error: parse error before
> "n_blocks"
> /usr/local/include/glib-2.0/glib/gmem.h:81: error: parse error before
> "n_bytes"
> /usr/local/include/glib-2.0/glib/gmem.h:83: error: parse error before
> "gsize"
> In file included from /usr/local/include/glib-2.0/glib/gcache.h:30,
>                  from /usr/local/include/glib-2.0/glib.h:35,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/glist.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/glist.h:34: error: syntax error before
> "typedef"
> In file included from /usr/local/include/glib-2.0/glib.h:35,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gcache.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gcache.h:34: error: syntax error before
> "typedef"
> In file included from /usr/local/include/glib-2.0/glib.h:36,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gcompletion.h:32: error: parse error
> before "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gcompletion.h:34: error: syntax error
> before "typedef"
> /usr/local/include/glib-2.0/glib/gcompletion.h:43: error: parse error
> before "gsize"
> In file included from /usr/local/include/glib-2.0/glib.h:37,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gconvert.h:33: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gconvert.h:35: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gconvert.h:56: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gconvert.h:63: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gconvert.h:68: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gconvert.h:70: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gconvert.h:74: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gconvert.h:76: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gconvert.h:82: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gconvert.h:88: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gconvert.h:91: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gconvert.h:93: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gconvert.h:96: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gconvert.h:109: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gconvert.h:112: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gconvert.h:114: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gconvert.h:117: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gconvert.h:121: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gconvert.h:121: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gconvert.h:125: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gconvert.h:125: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gconvert.h:126: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gconvert.h:126: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gconvert.h:127: error: parse error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gconvert.h:129: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gconvert.h:129: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gconvert.h:131: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gconvert.h:131: warning: data definition
> has no type or storage  class
> In file included from /usr/local/include/glib-2.0/glib.h:38,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gdataset.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gdataset.h:34: error: syntax error before
> "typedef"
> In file included from /usr/local/include/glib-2.0/glib.h:39,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gdate.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gdate.h:43: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gdate.h:130: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:130: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:131: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:131: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:132: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:132: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:133: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:133: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:134: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:134: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:137: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:137: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:202: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:202: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:204: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:204: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:205: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:205: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:206: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gdate.h:206: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/gdate.h:229: error: parse error before
> "g_date_strftime"
> /usr/local/include/glib-2.0/glib/gdate.h:230: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gdate.h:232: warning: data definition has
> no type or storage cl ass
> In file included from /usr/local/include/glib-2.0/glib.h:40,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gdir.h:28: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gdir.h:30: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gdir.h:41: error: syntax error before
> "gchar"
> In file included from /usr/local/include/glib-2.0/glib.h:42,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gfileutils.h:26: error: parse error
> before "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gfileutils.h:30: error: syntax error
> before "typedef"
> /usr/local/include/glib-2.0/glib/gfileutils.h:87: error: parse error
> before "gsize"
> In file included from /usr/local/include/glib-2.0/glib.h:43,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/ghash.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/ghash.h:34: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/ghash.h:104: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/ghash.h:104: warning: data definition has
> no type or storage cl ass
> /usr/local/include/glib-2.0/glib/ghash.h:106: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/ghash.h:106: warning: data definition has
> no type or storage cl ass
> In file included from /usr/local/include/glib-2.0/glib.h:44,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/ghook.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/ghook.h:36: error: syntax error before
> "typedef"
> In file included from /usr/local/include/glib-2.0/glib/gmain.h:23,
>                  from /usr/local/include/glib-2.0/glib/giochannel.h:31,
>                  from /usr/local/include/glib-2.0/glib.h:45,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gslist.h:32: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gslist.h:34: error: syntax error before
> "typedef"
> In file included from /usr/local/include/glib-2.0/glib/giochannel.h:31,
>                  from /usr/local/include/glib-2.0/glib.h:45,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gmain.h:26: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gmain.h:28: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gmain.h:35: error: parse error before
> "pid"
> /usr/local/include/glib-2.0/glib/gmain.h:251: error: parse error before
> "pid"
> /usr/local/include/glib-2.0/glib/gmain.h:296: error: parse error before
> "GPid"
> /usr/local/include/glib-2.0/glib/gmain.h:300: error: parse error before
> "pid"
> In file included from /usr/local/include/glib-2.0/glib/gstring.h:31,
>                  from /usr/local/include/glib-2.0/glib/giochannel.h:32,
>                  from /usr/local/include/glib-2.0/glib.h:45,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gunicode.h:28: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gunicode.h:30: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gunicode.h:114: error: parse error before
> "char"
> /usr/local/include/glib-2.0/glib/gunicode.h:118: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:118: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:119: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:119: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:120: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:120: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:121: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:121: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:122: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:122: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:123: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:123: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:124: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:124: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:125: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:125: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:126: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:126: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:127: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:127: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:128: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:128: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:129: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:129: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:130: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:130: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:131: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:131: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:135: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:135: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:136: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:136: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:137: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:137: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:141: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:141: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:143: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:143: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:146: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:146: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:149: error: parse error before
> "G_GNUC_CONST"
> /usr/local/include/glib-2.0/glib/gunicode.h:149: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:156: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gunicode.h:162: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gunicode.h:162: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:172: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:185: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:190: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gunicode.h:195: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:198: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:201: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:207: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gunicode.h:207: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:212: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gunicode.h:212: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:215: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gunicode.h:215: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:220: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gunicode.h:220: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:225: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gunicode.h:225: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:230: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gunicode.h:230: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:235: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gunicode.h:235: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:249: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:256: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:256: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:258: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:258: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:260: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:260: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:274: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:275: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gunicode.h:280: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gunicode.h:280: warning: data definition
> has no type or storage  class
> In file included from /usr/local/include/glib-2.0/glib/gstring.h:32,
>                  from /usr/local/include/glib-2.0/glib/giochannel.h:32,
>                  from /usr/local/include/glib-2.0/glib.h:45,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gutils.h:33: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gutils.h:114: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:115: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:116: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:117: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:120: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:123: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:124: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:125: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:126: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:126: error: parse error before
> '*' token
> /usr/local/include/glib-2.0/glib/gutils.h:126: warning: data definition
> has no type or storage c lass
> /usr/local/include/glib-2.0/glib/gutils.h:127: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:127: error: parse error before
> '*' token
> /usr/local/include/glib-2.0/glib/gutils.h:127: warning: data definition
> has no type or storage c lass
> /usr/local/include/glib-2.0/glib/gutils.h:129: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:129: error: parse error before
> '*' token
> /usr/local/include/glib-2.0/glib/gutils.h:129: warning: data definition
> has no type or storage c lass
> /usr/local/include/glib-2.0/glib/gutils.h:147: error: parse error before
> "G_GNUC_PRINTF"
> /usr/local/include/glib-2.0/glib/gutils.h:147: warning: data definition
> has no type or storage c lass
> /usr/local/include/glib-2.0/glib/gutils.h:157: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:165: error: syntax error before
> "gchar"
> /usr/local/include/glib-2.0/glib/gutils.h:176: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gutils.h:176: warning: data definition
> has no type or storage c lass
> /usr/local/include/glib-2.0/glib/gutils.h:177: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gutils.h:177: warning: data definition
> has no type or storage c lass
> /usr/local/include/glib-2.0/glib/gutils.h:191: error: syntax error before
> "gchar"
> In file included from /usr/local/include/glib-2.0/glib/giochannel.h:32,
>                  from /usr/local/include/glib-2.0/glib.h:45,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gstring.h:34: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gstring.h:36: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gstring.h:42: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gstring.h:42: warning: no semicolon at
> end of struct or union
> /usr/local/include/glib-2.0/glib/gstring.h:43: warning: data definition
> has no type or storage c lass
> /usr/local/include/glib-2.0/glib/gstring.h:48: error: parse error before
> "size"
> /usr/local/include/glib-2.0/glib/gstring.h:54: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:63: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:64: error: parse error before
> "dfl_size"
> /usr/local/include/glib-2.0/glib/gstring.h:73: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gstring.h:75: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gstring.h:77: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:84: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:97: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:99: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:102: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:105: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:108: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gstring.h:114: error: parse error before
> "G_GNUC_PRINTF"
> /usr/local/include/glib-2.0/glib/gstring.h:114: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gstring.h:117: error: parse error before
> "G_GNUC_PRINTF"
> /usr/local/include/glib-2.0/glib/gstring.h:117: warning: data definition
> has no type or storage class
> In file included from /usr/local/include/glib-2.0/glib.h:45,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/giochannel.h:34: error: parse error
> before "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/giochannel.h:39: error: syntax error
> before "typedef"
> /usr/local/include/glib-2.0/glib/giochannel.h:116: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:116: warning: no semicolon
> at end of struct or uni on
> /usr/local/include/glib-2.0/glib/giochannel.h:124: error: parse error
> before ':' token
> /usr/local/include/glib-2.0/glib/giochannel.h:125: error: parse error
> before ':' token
> /usr/local/include/glib-2.0/glib/giochannel.h:126: error: parse error
> before ':' token
> /usr/local/include/glib-2.0/glib/giochannel.h:127: error: parse error
> before ':' token
> /usr/local/include/glib-2.0/glib/giochannel.h:128: error: parse error
> before ':' token
> /usr/local/include/glib-2.0/glib/giochannel.h:129: error: parse error
> before ':' token
> /usr/local/include/glib-2.0/glib/giochannel.h:133: error: parse error
> before '}' token
> /usr/local/include/glib-2.0/glib/giochannel.h:142: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:147: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:172: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:176: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:204: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:205: error: parse error
> before "g_io_channel_get_b uffer_size"
> /usr/local/include/glib-2.0/glib/giochannel.h:205: warning: data
> definition has no type or stora ge class
> /usr/local/include/glib-2.0/glib/giochannel.h:214: error: syntax error
> before "gchar"
> /usr/local/include/glib-2.0/glib/giochannel.h:222: error: syntax error
> before "gchar"
> /usr/local/include/glib-2.0/glib/giochannel.h:232: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:237: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:241: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:245: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/giochannel.h:253: error: parse error
> before "gssize"
> In file included from /usr/local/include/glib-2.0/glib.h:46,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gkeyfile.h:28: error: parse error before
> "G_BEGIN_DECLS"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:30: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:63: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:72: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:73: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:74: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:74: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:76: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:76: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:79: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:80: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:90: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:90: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:98: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:98: warning: data definition
> has no type or storage class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:107: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:107: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:132: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:133: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:138: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:143: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:144: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:150: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:154: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:155: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:160: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:164: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:165: warning: data definition
> has no type or storage  class
> /usr/local/include/glib-2.0/glib/gkeyfile.h:170: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:179: error: parse error before
> "G_GNUC_MALLOC"
> /usr/local/include/glib-2.0/glib/gkeyfile.h:179: warning: data definition
> has no type or storage  class
> In file included from /usr/local/include/glib-2.0/glib.h:50,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gmarkup.h:30: error: syntax error before
> "typedef"
> /usr/local/include/glib-2.0/glib/gmarkup.h:77: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gmarkup.h:88: error: parse error before
> "gsize"
> /usr/local/include/glib-2.0/glib/gmarkup.h:107: error: parse error before
> "gssize"
> /usr/local/include/glib-2.0/glib/gmarkup.h:121: error: parse error before
> "gssize"
> In file included from /usr/local/include/glib-2.0/glib.h:52,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gmessages.h:44: error: parse error before
> "g_printf_string_uppe r_bound"
> /usr/local/include/glib-2.0/glib/gmessages.h:109: error: parse error
> before "G_GNUC_INTERNAL"
> In file included from /usr/local/include/glib-2.0/glib.h:57,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gqsort.h:37: error: parse error before
> "gsize"
> In file included from /usr/local/include/glib-2.0/glib.h:65,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gspawn.h:80: error: parse error before
> "GPid"
> /usr/local/include/glib-2.0/glib/gspawn.h:93: error: parse error before
> "GPid"
> /usr/local/include/glib-2.0/glib/gspawn.h:123: error: parse error before
> "pid"
> In file included from /usr/local/include/glib-2.0/glib.h:66,
>                  from uuidP.h:33,
>                  from Ruuid.h:5,
>                  from Rinit.c:1:
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:104: error: parse error
> before "g_strlcpy"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:106: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:106: warning: data definition
> has no type or storag e class
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:107: error: parse error
> before "g_strlcat"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:109: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:109: warning: data definition
> has no type or storag e class
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:111: error: parse error
> before "gssize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:116: error: parse error
> before "gssize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:156: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:158: error: parse error
> before "gssize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:160: error: parse error
> before "gssize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:188: error: parse error
> before "gsize"
> /usr/local/include/glib-2.0/glib/gstrfuncs.h:189: error: parse error
> before "length"
> make: *** [Rinit.o] Error 1
> chmod: failed to get attributes of
> `/package/R/2.3.1/lib/R/library/Ruuid/libs/*': No such file o r directory
> ERROR: compilation failed for package 'Ruuid'
> ** Removing '/package/R/2.3.1/lib/R/library/Ruuid'
> ** Restoring previous '/package/R/2.3.1/lib/R/library/Ruuid'
>
> The downloaded packages are in
>         /databank/temp/RtmptvZa7V/downloaded_packages
> Warning message:
> installation of package 'Ruuid' had non-zero exit status in:
> install.packages(pkgs = pkgs, repos  = repos, dependencies = dependencies,
>>
>
> --please do not edit the information below--
>
> Version:
>  platform = sparc-sun-solaris2.9
>  arch = sparc
>  os = solaris2.9
>  system = sparc, solaris2.9
>  status =
>  major = 2
>  minor = 3.1
>  year = 2006
>  month = 06
>  day = 01
>  svn rev = 38247
>  language = R
>  version.string = Version 2.3.1 (2006-06-01)
>
> Locale:
> C
>
> Search Path:
>  .GlobalEnv, package:methods, package:stats, package:graphics, package:grDevices, package:utils, package:datasets, Autoloads, package:base
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>

Thomas Lumley			Assoc. Professor, Biostatistics
tlumley at u.washington.edu	University of Washington, Seattle



[Rd] Ruuid had non-zero exit status (PR#8965)
Thomas Lumley