From hamid.khalili at gmail.com  Fri Apr 30 12:06:56 2010
From: hamid.khalili at gmail.com (Hamid Khalili)
Date: Fri, 30 Apr 2010 12:06:56 +0200
Subject: [Rd] R CMD check Error after R CMD build for R-2.11.0
In-Reply-To: <4BD9BE52.7050507@statistik.tu-dortmund.de>
References: <v2hb1c1eb501004290839m41c0bf5mac8c3ebd75ab7add@mail.gmail.com>
	<4BD9BE52.7050507@statistik.tu-dortmund.de>
Message-ID: <i2jb1c1eb501004300306geae2f044gb79dc11972b48244@mail.gmail.com>

I'm really sorry that I had to disturb you (for nothing) because
everything looks fine now ( why ??). After I build  again the package
with search() in the "Rsq.2.array" examples, I didn't get any Error.

The only things that I changed it's the directory where is build the package.

The package directory path is located on a different drive (USB KEY)
from where it was build (HARDRIVE).This return the Error.
Now I build the package on the same drive (both in the USB KEY).

I try it with the last stable version R-2.11.0 and the patched version
Patched (2010-04-28 r51857)

/media/HAMID$ ~/Desktop/R-2.11.0/bin/R CMD build eqtl/
* checking for file 'eqtl/DESCRIPTION' ... OK
* preparing 'eqtl':
* checking DESCRIPTION meta-information ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'eqtl_1.1.tar.gz'

/media/HAMID$ ~/Desktop/R-2.11.0/bin/R CMD check eqtl_1.1.tar.gz
* checking for working pdflatex ... OK
* using log directory '/media/HAMID/eqtl.Rcheck'
* using R version 2.11.0 (2010-04-22)
* using session charset: UTF-8
* checking for file 'eqtl/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'eqtl' version '1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for executable files ... OK
* checking whether package 'eqtl' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

It doesn't really look to be a user autorisation problems. Do you
think it's a problem related only to my computer or should I report it
as a bug ?

thks a lot,



[Rd] R CMD check Error after R CMD build for R-2.11.0
Hamid Khalili