From a.lobley at ucl.ac.uk  Fri Apr 27 16:24:25 2007
From: a.lobley at ucl.ac.uk (Anna Lobley)
Date: Fri, 27 Apr 2007 15:24:25 +0100
Subject: [Rd] R-2.5.0 install
Message-ID: <46320799.8010606@ucl.ac.uk>

I am receiving the following errors when trying to install
gcrma and a number of other Bioconductor packages when
the installWithVers flag is set to be TRUE.

 >source("http://www.bioconductor.org/getBioC.R");
 >getBioC("gcrma", installWithVers=T);
Running biocinstall version 2.0.7 with R version 2.5.0
Your version of R requires version 2.0 of Bioconductor.

Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase
Loading required package: affy
Loading required package: Biobase.... etc etc.....

Error: evaluation nested too deeply: infinite recursion / 
options(expressions=)?
Execution halted
ERROR: lazy loading failed for package 'gcrma'
** Removing 'R-2.5.0/library/gcrma_2.8.0'


Session Info below:
R version 2.5.0 (2007-04-23)
i686-pc-linux-gnu
 
locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C

any help appreciated..
Anna



[Rd] R-2.5.0 install
Anna Lobley