From ligges at statistik.uni-dortmund.de  Wed May 11 10:12:22 2005
From: ligges at statistik.uni-dortmund.de (Uwe Ligges)
Date: Wed May 11 10:11:41 2005
Subject: [Rd] Implementing R on  IBM p690 cluster Jump
In-Reply-To: <4281BAA4.9000309@ufz.de>
References: <4281BAA4.9000309@ufz.de>
Message-ID: <4281BE66.4050709@statistik.uni-dortmund.de>

Ralf Seppelt wrote:

> Dear All,
> 
> we're trying to implement R on the IBM p690 cluster "Jump" at the 
> research centre in J?lich, Germany (c.f. 
> http://www.fz-juelich.de/nic/Supercomputer/computer-e.html)
> using the most recent version of R (2.1.0) and precisly following the 
> installation instructions.


How much cpu time for further R development do we get on that machine if 
we can help? ;-)

Uwe Ligges



> After ./configure we get the final message:
> ----------------
> R is now configured for powerpc-ibm-aix5.2.0.0
> 
>   Source directory:          .
>   Installation directory:    /usr/local
> 
>   C compiler:                gcc -mno-fp-in-toc -g -O2
>   C++ compiler:              g++  -g -O2
>   Fortran compiler:          f77  -g
> 
>   Interfaces supported:      X11, tcltk
>   External libraries:        readline, BLAS(ESSL)
>   Additional capabilities:   PNG, JPEG, MBCS, NLS
>   Options enabled:           R profiling
> 
>   Recommended packages:      yes
> 
> configure: WARNING: you cannot build info or html versions of the R manuals
> configure: WARNING: I could not determine a browser
> 
> --------------
> After make we get
> 
> ufzaloe@j36.!:
> ufzaloe@j36.!: make
> ...
>         gcc -Wl,-bM:SRE -Wl,-H512 -Wl,-T512 -Wl,-bnoentry -Wl,-bexpall 
> -Wl,-bI:../../../etc/R.exp -L/usr/local/lib -o R_X11.so  dataentry.lo 
> devX11.lo rotated.lo rbitmap.lo -lSM -lICE -lX11  -ljpeg -lpng -lz
> ld: 0711-317 ERROR: Undefined symbol: .log10
> ld: 0711-317 ERROR: Undefined symbol: .floor
> ld: 0711-317 ERROR: Undefined symbol: .libintl_gettext
> ld: 0711-317 ERROR: Undefined symbol: .pow
> ld: 0711-317 ERROR: Undefined symbol: .sin
> ld: 0711-317 ERROR: Undefined symbol: .cos
> ld: 0711-317 ERROR: Undefined symbol: .tan
> ld: 0711-345 Use the -bloadmap or -bnoquiet option to obtain more 
> information.
> collect2: ld returned 8 exit status
> make: 1254-004 The error code from the last command is 1.
> Stop.
> make: 1254-004 The error code from the last command is 2.
> Stop.
> make: 1254-004 The error code from the last command is 1.
> Stop.
> make: 1254-004 The error code from the last command is 1.
> Stop.
> make: 1254-004 The error code from the last command is 1.
> ---------------
> 
> Before bugging the administiors in J?lich, we would like to ask the R 
> consortium: Are there any related experiences from people who worked on 
> the implementation of R on different platforms?
> 
> Thanks for help
> 
> Ralf Seppelt & Carsten Dormann
> 
> PS: the configure log-file is attached to this mail.
> 
> 
> 
> ------------------------------------------------------------------------
> 
> ./configure
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> checking host system type... powerpc-ibm-aix5.2.0.0
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> checking for dummy main to link with Fortran libraries... none
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> config.status: creating src/include/Makefile
> config.status: creating src/include/Rmath.h0
> config.status: creating src/include/R_ext/Makefile
> config.status: creating src/library/Recommended/Makefile
> config.status: creating src/library/Makefile
> config.status: creating src/library/base/DESCRIPTION
> config.status: creating src/library/base/Makefile
> config.status: creating src/library/datasets/DESCRIPTION
> config.status: creating src/library/datasets/Makefile
> config.status: creating src/library/graphics/DESCRIPTION
> config.status: creating src/library/graphics/Makefile
> config.status: creating src/library/grDevices/DESCRIPTION
> config.status: creating src/library/grDevices/Makefile
> config.status: creating src/library/grDevices/src/Makefile
> config.status: creating src/library/grid/DESCRIPTION
> config.status: creating src/library/grid/Makefile
> config.status: creating src/library/grid/src/Makefile
> config.status: creating src/library/methods/DESCRIPTION
> config.status: creating src/library/methods/Makefile
> config.status: creating src/library/methods/src/Makefile
> config.status: creating src/library/profile/Makefile
> config.status: creating src/library/stats/DESCRIPTION
> config.status: creating src/library/stats/Makefile
> config.status: creating src/library/stats/src/Makefile
> config.status: creating src/library/stats4/DESCRIPTION
> config.status: creating src/library/stats4/Makefile
> config.status: creating src/library/splines/DESCRIPTION
> config.status: creating src/library/splines/Makefile
> config.status: creating src/library/splines/src/Makefile
> config.status: creating src/library/tcltk/DESCRIPTION
> config.status: creating src/library/tcltk/Makefile
> config.status: creating src/library/tcltk/src/Makefile
> config.status: creating src/library/tools/DESCRIPTION
> config.status: creating src/library/tools/Makefile
> config.status: creating src/library/tools/src/Makefile
> config.status: creating src/library/utils/DESCRIPTION
> config.status: creating src/library/utils/Makefile
> config.status: creating src/main/Makefile
> config.status: creating src/modules/Makefile
> config.status: creating src/modules/X11/Makefile
> config.status: creating src/modules/internet/Makefile
> config.status: creating src/modules/lapack/Makefile
> config.status: creating src/modules/vfonts/Makefile
> config.status: creating src/nmath/Makefile
> config.status: creating src/nmath/standalone/Makefile
> config.status: creating src/scripts/Makefile
> config.status: creating src/scripts/COMPILE
> config.status: creating src/scripts/INSTALL
> config.status: creating src/scripts/REMOVE
> config.status: creating src/scripts/R.sh
> config.status: creating src/scripts/Rdconv
> config.status: creating src/scripts/Rprof
> config.status: creating src/scripts/SHLIB
> config.status: creating src/scripts/Sd2Rd
> config.status: creating src/scripts/build
> config.status: creating src/scripts/check
> config.status: creating src/scripts/f77
> config.status: creating src/unix/Makefile
> config.status: creating tests/Makefile
> config.status: creating tests/Embedding/Makefile
> config.status: creating tests/Examples/Makefile
> config.status: creating tests/Native/Makefile
> config.status: creating tools/Makefile
> config.status: creating src/include/config.h
> config.status: src/include/config.h is unchanged
> config.status: executing default-1 commands
> config.status: creating po/POTFILES
> config.status: creating po/Makefile
> config.status: executing stamp-h commands
> 
> R is now configured for powerpc-ibm-aix5.2.0.0
> 
>   Source directory:          .
>   Installation directory:    /usr/local
> 
>   C compiler:                gcc -mno-fp-in-toc -g -O2
>   C++ compiler:              g++  -g -O2
>   Fortran compiler:          f77  -g
> 
>   Interfaces supported:      X11, tcltk
>   External libraries:        readline, BLAS(ESSL)
>   Additional capabilities:   PNG, JPEG, MBCS, NLS
>   Options enabled:           R profiling
> 
>   Recommended packages:      yes
> 
> configure: WARNING: you cannot build info or html versions of the R manuals
> configure: WARNING: I could not determine a browser
> 
> 
> ------------------------------------------------------------------------
> 
> ______________________________________________
> R-devel@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel


[Rd] Implementing R on IBM p690 cluster Jump
Uwe Ligges