From ripley at stats.ox.ac.uk  Tue Jul 12 12:54:46 2005
From: ripley at stats.ox.ac.uk (ripley@stats.ox.ac.uk)
Date: Tue, 12 Jul 2005 12:54:46 +0200 (CEST)
Subject: [Rd] Sweave resource leak: leftover temp files (PR#7998)
Message-ID: <20050712105446.27C33A26B@slim.kubism.ku.dk>

This is actually a Windows bug.  Those files are unlink()ed, and it seems 
Windows is not respecting that (not an unknown phenomenon).  I have tried 
a few workarounds, and am about to commit one that seems to work.

No files are left over on a decent operating system, e.g. Solaris or FC3 
Linux.

On Fri, 8 Jul 2005 murdoch at stats.uwo.ca wrote:

> Harold, I've taken a closer look at your example and I'd call this an
> Sweave bug.  It creates tempfiles each time you run it, and doesn't
> delete them at the end.  For example:
>
> > list.files(tempdir())
> character(0)
> > testfile <- system.file("Sweave", "Sweave-test-1.Rnw", package = "utils")
> > Sweave(testfile, out="junk.tex")
> Writing to file junk.tex
> Processing code chunks ...
>  1 : print term verbatim
>  2 : term hide
>  3 : echo print term verbatim
>  4 : term verbatim
>  5 : echo term verbatim
>  6 : echo term verbatim eps pdf
>  7 : echo term verbatim eps pdf
>
> You can now run LaTeX on 'junk.tex'
> > list.files(tempdir())
>  [1] "Rf10523" "Rf13872" "Rf17129" "Rf2055"  "Rf2203"  "Rf2403"  "Rf27095"
>  [8] "Rf2892"  "Rf31415" "Rf5290"  "Rf6251"  "Rf6482"  "Rf7055"  "Rf724"
> > Sweave(testfile, out="C:/temp/junk.tex")
> Writing to file C:/temp/junk.tex
> Processing code chunks ...
>  1 : print term verbatim
>  2 : term hide
>  3 : echo print term verbatim
>  4 : term verbatim
>  5 : echo term verbatim
>  6 : echo term verbatim eps pdf
>  7 : echo term verbatim eps pdf
>
> You can now run LaTeX on 'C:/temp/junk.tex'
> > list.files(tempdir())
>  [1] "Rf10523" "Rf12679" "Rf1311"  "Rf13484" "Rf13872" "Rf17129" "Rf17288"
>  [8] "Rf2055"  "Rf21774" "Rf2203"  "Rf23417" "Rf2403"  "Rf27095" "Rf2892"
> [15] "Rf29444" "Rf31128" "Rf31415" "Rf32520" "Rf3338"  "Rf5290"  "Rf5551"
> [22] "Rf6251"  "Rf6482"  "Rf7055"  "Rf724"   "Rf7543"  "Rf758"   "Rf7673"
> > unlink(list.files(tempdir(),full=T))
> > list.files(tempdir())
> character(0)
>
> Harold:  a workaround for this would be to wrap your Sweave call in
> something like this:
>
> keep <- list.files(tempdir(), full=TRUE)  # keep previous temp files
>
> ... Call Sweave here ...
>
> temps <- list.files(tempdir(), full=TRUE)
> unlink(temps[!(temps %in% keep)])  # delete the newly created ones
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595



[Rd] Sweave resource leak: leftover temp files (PR#7998)
ripley@stats.ox.ac.uk