From mwkimpel at gmail.com  Wed Jan 30 05:14:30 2008
From: mwkimpel at gmail.com (Mark W Kimpel)
Date: Tue, 29 Jan 2008 23:14:30 -0500
Subject: [Rd] R package Matrix failing to build with R-devel on Ubuntu AMD64
Message-ID: <479FF9A6.7050005@gmail.com>

Switched back to R-devel tonight after using R-2.6.1 for awhile and when 
I updated my devel packages Matrix installation failed. Not critical for 
me but thought I should report it. I am using Ubuntu Gusty AMD64 OS. 
Tail of install output and sessionInfo follows. Mark

Loading required package: methods
Loading required package: lattice

Attaching package: 'Matrix'


         The following object(s) are masked from package:stats :

          xtabs

Error in new("dgCMatrix") :
   trying to generate an object from a virtual class ("dgCMatrix")
Calls: <Anonymous> ... eval.parent -> eval -> eval -> eval -> eval -> 
new -> .Call
Execution halted
ERROR: installing package indices failed
** Removing '/home/mkimpel/R_HOME/site-library/Matrix'
** Restoring previous '/home/mkimpel/R_HOME/site-library/Matrix'

The downloaded packages are in
         /tmp/RtmpJviXfF/downloaded_packages
Warning message:
In install.packages("Matrix") :
   installation of package 'Matrix' had non-zero exit status
 > sessionInfo()
R version 2.7.0 Under development (unstable) (2008-01-29 r44238)
x86_64-unknown-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] Biobase_1.17.8

loaded via a namespace (and not attached):
[1] tcltk_2.7.0

-- 

Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

15032 Hunter Court, Westfield, IN  46074

(317) 490-5129 Work, & Mobile & VoiceMail
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[Rd] R package Matrix failing to build with R-devel on Ubuntu AMD64
Mark W Kimpel