From ripley at stats.ox.ac.uk  Wed Apr 20 16:55:38 2005
From: ripley at stats.ox.ac.uk (Prof Brian Ripley)
Date: Wed Apr 20 16:55:47 2005
Subject: [Rd] make check failure -- R 2.1.0 Windows XP SP2
In-Reply-To: <42666A3D.505@bifx.org>
References: <42666A3D.505@bifx.org>
Message-ID: <Pine.LNX.4.61.0504201554270.32678@gannet.stats>

Please read the comments: that is a random test and fails about 1 in 50.

On Wed, 20 Apr 2005, Conrad Halling wrote:

> I compiled R 2.1.0 under Windows XP SP2 as a preliminary to rebuilding a 
> custom package for use with R 2.1.0. The compile completed successfully, and 
> I was able to run demo(graphics) successfully. But make check and make 
> check-recommended fail.
>
>> version
>        _
> platform i386-pc-mingw32
> arch     i386
> os       mingw32
> system   i386, mingw32
> status
> major    2
> minor    1.0
> year     2005
> month    04
> day      18
> language R
>
>
> I downloaded the R source code and the tools on Tuesday morning, 19-Apr-2005. 
> I carefully followed the directions in the R-2.1.0/doc/html/R-admin.html 
> document and the directions at http://www.murdoch-sutherland.com/Rtools/. I 
> used the Unix tools from http://www.murdoch-sutherland.com/Rtools/tools.zip 
> and the MinGW compilers, MinGW-3.2.0-rc-3 (gcc 3.4.2) with the fixed f771.exe 
> compiler from http://www.stats.ox.ac.uk/pub/RWin/gcc-3.4.2-fix/f771.exe.
>
> Make check fails with the following error:
>
>
> running code in 'd-p-q-r-tests.R' ...OK
> comparing 'd-p-q-r-tests.Rout' to './d-p-q-r-tests.Rout.save' 
> ...386,387c386,387
> <  [7,]  7 -1.279898e-12   -1.279813e-12     -27.384307       -27.384307
> <  [8,]  8 -6.991040e-16   -6.220961e-16     -35.013437       -35.013437
> ---
>>  [7,]  7 -1.279865e-12   -1.279813e-12     -27.384307       -27.384307
>>  [8,]  8 -6.661338e-16   -6.220961e-16     -35.013437       -35.013437
> 932,940c932
> < [1] "TRUE"
> < [2] "TRUE"
> < [3] "TRUE"
> < [4] "TRUE"
> < [5] "TRUE"
> < [6] "TRUE"
> < [7] "`is.NA' value mismatches: 1 in current, 0  in target"
> < Warning message:
> < NaNs produced in: pgamma(q, shape, scale, lower.tail, log.p)
> ---
>> [1] TRUE TRUE TRUE TRUE TRUE TRUE TRUE
> 951c943
> < [1] "Mean scaled  difference: 7.710642e-05"
> ---
>> [1] TRUE
> make[3]: *** [d-p-q-r-tests.Rout] Error 1
> make[2]: *** [test-Specific] Error 2
> make[1]: *** [test-all-basics] Error 1
> make: [test-Basic] Error 2 (ignored)
>
>
>
> After building the recommended packages and then running make 
> check-recommended, I got the following error:
>
>
> C:\RTools\src\R-2.1.0\src\gnuwin32>make check-recommended
> -------- Testing package boot --------
> Massaging examples into 'boot-Ex.R' ...
> Running examples in 'boot-Ex.R' ...
> -------- Testing package cluster --------
> Massaging examples into 'cluster-Ex.R' ...
> Running examples in 'cluster-Ex.R' ...
> Running specific tests
> Running `agnes-ex.R'
> Comparing `agnes-ex.Rout' to `agnes-ex.Rout.save' ...552c552
> <  [9]   2.0000   9.0000   6.0000  32.1172  10.0000   8.0000  16.0000 
> 27.9063
> ---
>>  [9]   2.0000   9.0000   6.0000  32.1172  10.0000   8.0000  16.0000 
> 27.9062
> 554c554
> < [25]   4.0000   5.5000   5.0000  22.3438   5.0000  12.5000  23.7813 
> 8.0000
> ---
>> [25]   4.0000   5.5000   5.0000  22.3438   5.0000  12.5000  23.7812 
> 8.0000
> 559c559
> < [65]   5.0000  19.1250   2.0000   6.0000  10.5000   4.0000  15.0000 
> 41.5313
> ---
>> [65]   5.0000  19.1250   2.0000   6.0000  10.5000   4.0000  15.0000 
> 41.5312
> OK
> Running `clara-NAs.R'
> Comparing `clara-NAs.Rout' to `clara-NAs.Rout.save' ...36,47c36,47
> < 6  NaN NaN NaN NaN NaN
> < 7   40  45  12  56  65 NaN
> < 8    8  21  46  52  33 NaN  34
> < 9   23  18  64  41  22 NaN  63  29
> < 10  19  30  42  61  44 NaN  33  13  42
> < 11 165 178 270 209 190 NaN 181 157 168 148
> < 12 169 182 244 213 194 NaN 185 161 172 152  30
> < 13 155 168 248 199 180 NaN 171 147 158 138  12  18
> < 14 208 216 252 236 208 NaN 264 206 188 210  18   8   4
> < 15 214 222 258 242 214 NaN 270 212 194 216  12  14  10   6
> < 16 157 170 260 201 182 NaN 173 149 160 140   8  28  10   8   2
> < 17 171 184 246 215 196 NaN 187 163 174 154  30   2  18   6  12  28
> ---
>> 6   NA  NA  NA  NA  NA
>> 7   40  45  12  56  65  NA
>> 8    8  21  46  52  33  NA  34
>> 9   23  18  64  41  22  NA  63  29
>> 10  19  30  42  61  44  NA  33  13  42
>> 11 165 178 270 209 190  NA 181 157 168 148
>> 12 169 182 244 213 194  NA 185 161 172 152  30
>> 13 155 168 248 199 180  NA 171 147 158 138  12  18
>> 14 208 216 252 236 208  NA 264 206 188 210  18   8   4
>> 15 214 222 258 242 214  NA 270 212 194 216  12  14  10   6
>> 16 157 170 260 201 182  NA 173 149 160 140   8  28  10   8   2
>> 17 171 184 246 215 196  NA 187 163 174 154  30   2  18   6  12  28
> 50c50
> <    2.00   27.25  147.50  114.60  188.50  270.00   16.00
> ---
>>    2.00   27.25  147.50  114.50  188.50  270.00   16.00
> OK
> Running `clara-ex.R'
> Running `clara.R'
> Comparing `clara.Rout' to `clara.Rout.save' ...OK
> Running `clusplot-out.R'
> Comparing `clusplot-out.Rout' to `clusplot-out.Rout.save' ...26,28c26,28
> < [1,]   0.0000  NaN 166.9258
> < [2,]      NaN    0      NaN
> < [3,] 166.9258  NaN   0.0000
> ---
>> [1,]   0.0000   NA 166.9258
>> [2,]       NA    0       NA
>> [3,] 166.9258   NA   0.0000
> 35,38c35,38
> < [1,]   0.0000  NaN 146.3222 291.3211
> < [2,]      NaN    0      NaN      NaN
> < [3,] 146.3222  NaN   0.0000      NaN
> < [4,] 291.3211  NaN      NaN   0.0000
> ---
>> [1,]   0.0000   NA 146.3222 291.3211
>> [2,]       NA    0       NA       NA
>> [3,] 146.3222   NA   0.0000       NA
>> [4,] 291.3211   NA       NA   0.0000
> 62,63c62,63
> < [2,] 1.433071 0.000000      NaN
> < [3,] 2.851715      NaN 0.000000
> ---
>> [2,] 1.433071 0.000000       NA
>> [3,] 2.851715       NA 0.000000
> 71,73c71,73
> < [2,] 2.241570 0.00000       NaN       NaN
> < [3,] 1.634033     NaN 0.0000000 0.9461858
> < [4,] 3.094589     NaN 0.9461858 0.0000000
> ---
>> [2,] 2.241570 0.00000        NA        NA
>> [3,] 1.634033      NA 0.0000000 0.9461858
>> [4,] 3.094589      NA 0.9461858 0.0000000
> 81,83c81,83
> < [2,] 1.989916 0.0000000      NaN        NaN 0.94713417
> < [3,] 1.552387       NaN 0.000000 1.17348334 2.22769309
> < [4,] 3.115161       NaN 1.173483 0.00000000 0.04539385
> ---
>> [2,] 1.989916 0.0000000       NA         NA 0.94713417
>> [3,] 1.552387        NA 0.000000 1.17348334 2.22769309
>> [4,] 3.115161        NA 1.173483 0.00000000 0.04539385
> OK
> Running `daisy-ex.R'
> make[2]: *** [daisy-ex.Rout] Error 1
> make[1]: *** [tests] Error 2
> make: *** [pkgcheck-cluster] Error 2
>
> -- 
> Conrad Halling
> conrad.halling@bifx.org
>
> ______________________________________________
> R-devel@stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>

-- 
Brian D. Ripley,                  ripley@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595


[Rd] make check failure -- R 2.1.0 Windows XP SP2
Prof Brian Ripley