From you at ifn-magdeburg.de  Wed Nov 24 13:06:53 2010
From: you at ifn-magdeburg.de (Wonsang You)
Date: Wed, 24 Nov 2010 04:06:53 -0800 (PST)
Subject: [Rd] installing RMySQL (PR#13633)
In-Reply-To: <20090331043011.D20E92832183@mail.pubhealth.ku.dk>
References: <20090331043011.D20E92832183@mail.pubhealth.ku.dk>
Message-ID: <1290600413141-3057139.post@n4.nabble.com>


I guess that you already solved the error in installing the R package RMySQL.
Recently, I also suffered from the same problem in Ubuntu 10.10. I would
like to report my solution.

I just installed a linux package "libmysqlclient-dev" which contains MySQL
database development files and headers. Then, I attempted to install the
RMySQL package again, and there was no error.



ankhee dutta wrote:
> 
> Full_Name: Ankhee Dutta
> Version: 2.3
> OS: LINUX
> Submission from: (NULL) (202.141.12.97)
> 
> 
> 
> 
> I have a linux system of Mandriva-2007 with R version 2.3.0 and MySQL with
> 5.0.0. I have also got DBI-R database interface version-0.1-11 installed
> on
> my Linux system.While installing RMySQL package version 0.5-11 i am 
> facing
>  problem .
> 
> while installation the error report which is coming is as follows:
> 
> 
> 
> * Installing *source* package 'RMySQL' ...
> creating cache ./config.cache
> checking how to run the C preprocessor... cc -E
> checking for compress in -lz... yes
> checking for getopt_long in -lc... yes
> checking for mysql_init in -lmysqlclient... no
> checking for mysql.h... no
> checking for mysql_init in -lmysqlclient... no
> checking for mysql_init in -lmysqlclient... no
> checking for mysql_init in -lmysqlclient... no
> checking for mysql_init in -lmysqlclient... no
> checking for mysql_init in -lmysqlclient... no
> checking for /usr/local/include/mysql/mysql.h... no
> checking for /usr/include/mysql/mysql.h... no
> checking for /usr/local/mysql/include/
> mysql/mysql.h... no
> checking for /opt/include/mysql/mysql.h... no
> checking for /include/mysql/mysql.h... no
> 
> Configuration error:
>  could not find the MySQL installation include and/or library
>  directories.  Manually specify the location of the MySQL
>  libraries and the header files and re-run R CMD INSTALL.
> 
> INSTRUCTIONS:
> 
> 1. Define and export the 2 shell variables PKG_CPPFLAGS and
>   PKG_LIBS to include the directory for header files (*.h)
>   and libraries, for example (using Bourne shell syntax):
> 
>      export PKG_CPPFLAGS="-I<MySQL-include-dir>"
>      export PKG_LIBS="-L<MySQL-lib-dir> -lmysqlclient"
> 
>   Re-run the R INSTALL command:
> 
>      R CMD INSTALL RMySQL_<version>.tar.gz
> 
> 2. Alternatively, you may pass the configure arguments
>      --with-mysql-dir=<base-dir> (distribution directory)
>   or
>      --with-mysql-inc=<base-inc> (where MySQL header files reside)
>      --with-mysql-lib=<base-lib> (where MySQL libraries reside)
>   in the call to R INSTALL --configure-args='...'
> 
>   R CMD INSTALL --configure-args='--with-mysql-dir=DIR'
> RMySQL_<version>.tar.gz
> 
> ERROR: configuration failed for package 'RMySQL'
> ** Removing '/usr/lib/R/library/RMySQL'
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
> 
> 

-----
Wonsang You
Leibniz Institute for Neurobiology
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[Rd] installing RMySQL (PR#13633)
Wonsang You