From pdalgd at gmail.com  Thu Dec 17 21:37:15 2015
From: pdalgd at gmail.com (peter dalgaard)
Date: Thu, 17 Dec 2015 21:37:15 +0100
Subject: [Rd] Assistance much appreciated
In-Reply-To: <567305C6.8050808@gmail.com>
References: <5672EA93.104@gmail.com> <5672EBB2.5090705@gmail.com>
	<5672F74C.70905@gmail.com>
	<651A9020-C94C-4B10-9164-8CC660D13BF0@gmail.com>
	<567305C6.8050808@gmail.com>
Message-ID: <960B4F41-6E0D-4947-8559-977A0360A6D4@gmail.com>


> On 17 Dec 2015, at 19:58 , Michael Felt <aixtools at gmail.com> wrote:
> 
> On 2015-12-17 19:30, peter dalgaard wrote:
>> Presumably the file in question is one of
>> 
>> Peter-Dalgaards-MacBook-Air:BUILD pd$ grep -r "^Package: tools" *
>> library/tools/DESCRIPTION:Package: tools
>> src/library/tools/DESCRIPTION:Package: tools
>> 
>> so the first thing I'd do is to have a good look at those files and see if they got somehow corrupted.
>> 
>> If they look sane, presumably the bit of code that checks it isn't... So that would be my next thing to check.
>> 
>> -pd
> I had just gotten here, and tried comparing them with the 32-bit build (as I do not know what sane is yet).
> 
> Sources are in:
> /data/prj/cran/R-3.2.3
> 
> Builds are in:
> /data/prj/cran/32/R-3.2.3 and
> /data/prj/cran/64/R-3.2.3
> 
> The files, in the build directories look "sane", at least comparable

OK. Perhaps a check for special characters with a hex editor, just to be sure? But probably not the cause.

> 
> root at x065:[/data/prj/cran/R-3.2.3]sdiff -w 132 /data/prj/cran/??/R-3.2.3/library/tools/DESCRIPTION
> Package: tools                                                      Package: tools
> Version: 3.2.3                                                      Version: 3.2.3
> Priority: base                                                      Priority: base
> Title: Tools for Package Development                                Title: Tools for Package Development
> Author: R Core Team                                                 Author: R Core Team
> Maintainer: R Core Team <R-core at r-project.org>                      Maintainer: R Core Team <R-core at r-project.org>
> Description: Tools for package development, administration and      Description: Tools for package development, administration and
> License: Part of R 3.2.3                                            License: Part of R 3.2.3
> Suggests: XML, codetools, methods                                   Suggests: XML, codetools, methods
> Built: R 3.2.3; powerpc-ibm-aix5.3.7.0; 2015-12-17 12:02:34 UTC  |  Built: R 3.2.3; ; Thu Dec 17 17:39:55 UTC 2015; unix
> 
> As the 32-bit build completes, while the 64-bit stops at "tools" there is a difference in what they have available:
> 
> root at x065:[/data/prj/cran/R-3.2.3]ls -l /data/prj/cran/??/R-3.2.3/library/tools
> /data/prj/cran/32/R-3.2.3/library/tools:
> total 72
> -rw-r--r--   1 root     33              356 Dec 17 12:02 DESCRIPTION
> -rw-r--r--   1 root     33             3665 Dec 16 11:37 INDEX
> drwxr-sr-x   2 root     33             4096 Dec 17 08:45 Meta
> -rw-r--r--   1 root     33             7112 Dec 17 12:02 NAMESPACE
> drwxr-sr-x   2 root     33             4096 Dec 17 12:02 R
> drwxr-sr-x   2 root     33             4096 Dec 16 11:37 help
> drwxr-sr-x   2 root     33             4096 Dec 16 11:37 html
> drwxr-sr-x   2 root     33             4096 Dec 16 11:34 libs
> 
> /data/prj/cran/64/R-3.2.3/library/tools:
> total 40
> -rw-r--r--   1 root     33              339 Dec 17 17:40 DESCRIPTION
> -rw-r--r--   1 root     33             7112 Dec 17 17:40 NAMESPACE
> drwxr-sr-x   2 root     33             4096 Dec 17 17:19 R
> drwxr-sr-x   2 root     33             4096 Dec 17 05:58 libs
> 
> So, is dcf.c, or main.c the better place to check. dcf.c does not look like "fun" - all those lexical arguments at the start:

Cue story of looking for keys under lamppost...

> 
> SEXP attribute_hidden do_readDCF(SEXP call, SEXP op, SEXP args, SEXP env)
> {
> .... man many lines ....
>                               } else {
>                                       /* Must be a regular line with no tag ... */
>                                       line[20] = '\0';
>                                       error(_("Line starting '%s ...' is malformed!"), line);
>                               }
>                       }
>               }
>       }
> ... more lines to go...
> 

As you're dying in an else clause, a previous if () must contain the clue. Unfortunately not necessarily the matching one.

My guess is that your TRE library is broken. The line should have matched the RE "regline" defined as

   tre_regcomp(&regline, "^[^:]+:[[:blank:]]*", REG_EXTENDED);
...and used here:
                if(tre_regexecb(&regline, line, 1, regmatch, 0) == 0) { 

but apparently does not.



> Thanks for the assistance!
> 
> Michael

-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk  Priv: PDalgd at gmail.com



[Rd] Assistance much appreciated
peter dalgaard