From simon.urbanek at r-project.org  Sat Apr 21 03:21:28 2007
From: simon.urbanek at r-project.org (Simon Urbanek)
Date: Fri, 20 Apr 2007 21:21:28 -0400
Subject: [Rd] [R] Error loading libraries in MAC
In-Reply-To: <3f547caa0704191354r7ac6beabl4da392df8a9e2f80@mail.gmail.com>
References: <07A9CBD0-C0BF-4017-A56D-63DEDB90B55A@mail.rockefeller.edu>
	<5CCD3B76-5831-47AE-BAF4-1D1D72AF3F24@mac.com>
	<3f547caa0704191354r7ac6beabl4da392df8a9e2f80@mail.gmail.com>
Message-ID: <D1CD5656-0D7E-4B56-8F4B-6F916C8562BB@r-project.org>

On Apr 19, 2007, at 4:54 PM, Matthew Keller wrote:

> HI Mayte & Gregory,
>
> This is probably a question needing to be posted to r-sig-mac. A  
> search for this problem on that forum turns up lots of hits. I  
> think everyone is having these problems (which makes me pause about  
> whether to switch to Mac, given how much I use R).

Sorry about that - it shouldn't make you pause as it was just a  
glitch in my build script because we changed compilers for the  
upcoming R 2.5.0 release.

It's all fixed now, the updated packages are on the master machine  
and should spread through the mirrors as we speak. (For those  
impatient, you can use http://r.research.att.com as a mirror to get  
the updated packages right now).

Cheers,
Simon

PS: To all: for Mac-related issues, please, always use R-SIG-Mac -  
read it and post there if you have problems. I usually try to respond  
ASAP.


> On Apr 19, 2007, at 5:47 AM, Byron Ellis wrote:
>
>> Actually it appears that a variety of packages are doing this
>> (gtools did it to me earlier today). Looks like there may be a
>> general compilation change, perhaps in preparation for 2.5?
>>
>
>
> Yes, indeed, R 2.5.0 doesn't need the 4.0.3 compilers anymore and
> thus no path changes. Unfortunately this seems to have influenced the
> 2.4 builds process. A hot fix is to install gcc4.0.3 from the full
> image of R 2.4.1 (open the installation image, click on "Packages"
> and then "gcc4.0.3" to install) or to use R 2.5.0 RC instead. I'll
> see if I can find the culprit in the meantime...
>
>
> On 4/18/07, Gregory Warnes <gregory.warnes at mac.com> wrote:
>> I have received a number of reports of problems with recent unversal
>> Mac packages from CRAN when used with R 2.4.1.  Has something in the
>> build script changed?
>>
>> -G
>>
>>
>> On Apr 18, 2007, at 4:49PM , Mayte Suarez-Farinas wrote:
>>
>>> Hi I just installed the gmodels package
>>> and the installation was successful but when I was trying to load  
>>> the
>>> library I got an error (see below).
>>> Interesting, yesterday I wrote to the maintainer of RSQLite apckage
>>> because I got the same error.
>>> Does somebody knows what is going on ??
>>>
>>> thanks,
>>> Mayte
>>>
>>>
>>> library(gmodels)
>>> Error in dyn.load(x, as.logical(local), as.logical(now)) :
>>>       unable to load shared library '/Library/Frameworks/ 
>>> R.framework/
>>> Versions/2.4/Resources/library/gtools/libs/i386/gtools.so':
>>>    dlopen(/Library/Frameworks/R.framework/Versions/2.4/Resources/
>>> library/gtools/libs/i386/gtools.so, 6): Library not loaded: /usr/
>>> local/gcc4.0/i686-apple-darwin8/lib/libgcc_s.1.0.dylib
>>>    Referenced from: /Library/Frameworks/R.framework/Versions/2.4/
>>> Resources/library/gtools/libs/i386/gtools.so
>>>    Reason: image not found
>>> Error: package/namespace load failed for 'gmodels'
>>>
>>> R.Version()
>>> $platform
>>> [1] "i386-apple-darwin8.8.1"
>>>
>>> $arch
>>> [1] "i386"
>>>
>>> $os
>>> [1] "darwin8.8.1"
>>>
>>> $system
>>> [1] "i386, darwin8.8.1"
>>>
>>> $status
>>> [1] ""
>>>
>>> $major
>>> [1] "2"
>>>
>>> $minor
>>> [1] "4.1"
>>>
>>> $year
>>> [1] "2006"
>>>
>>> $month
>>> [1] "12"
>>>
>>> $day
>>> [1] "18"
>>>
>>> $`svn rev`
>>> [1] "40228"
>>>
>>> $language
>>> [1] "R"
>>>
>>> $version.string
>>> [1] "R version 2.4.1 (2006-12-18)"
>>>
>>>>
>>>
>>> ______________________________________________
>>> R-help at stat.math.ethz.ch mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-
>>> guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>
>> ______________________________________________
>> R-help at stat.math.ethz.ch mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting- 
>> guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
>
> -- 
> Matthew C Keller
> Postdoctoral Fellow
> Virginia Institute for Psychiatric and Behavioral Genetics
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>



[Rd] [R] Error loading libraries in MAC
Simon Urbanek