From pgilbert at bank-banque-canada.ca  Thu Jun  1 18:00:07 2006
From: pgilbert at bank-banque-canada.ca (Paul Gilbert)
Date: Thu, 01 Jun 2006 12:00:07 -0400
Subject: [Rd] package installation errors
Message-ID: <447F0F07.7090900@bank-banque-canada.ca>

I installed R-2.3.1 and ran make check without problem, but I am having 
trouble installing several packages  using gcc (GCC) 3.2.3 20030502 (Red 
Hat Linux 3.2.3-53)
on Red Hat Enterprise Linux AS release 3 (Taroon Update 7) Kernel 
2.4.21-40.ELsmp on an x86_64

Below are the messages from MCMCpack. Perhaps my systems are messed up?

Paul Gilbert

 > install.packages("MCMCpack")
Warning in install.packages("MCMCpack") : argument 'lib' is missing: 
using /home/mfa/gilp/toolchain/R/asd05546/R-2.3.1/site-library
--- Please select a CRAN mirror for use in this session ---
....

Selection: 3
trying URL 'http://cran.at.r-project.org/src/contrib/MCMCpack_0.7-2.tar.gz'
Content type 'application/x-tar' length 303618 bytes
opened URL
==================================================
downloaded 296Kb

* Installing *source* package 'MCMCpack' ...
checking for C++ compiler default output file name... a.out
checking whether the C++ compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking ieeefp.h usability... no
checking ieeefp.h presence... no
checking for ieeefp.h... no
checking for trunc... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/mfa/gilp/toolchain/R/asd05546/R-2.3.1/include 
-I/home/mfa/gilp/toolchain/R/asd05546/R-2.3.1/include  
-I/usr/local/include  -DSCYTHE_COMPILE_DIRECT -DSCYTHE_NO_RANGE   -fpic  
-g -O2 -c distributions.cc -o distributions.o
distributions.cc: In function `double SCYTHE::INTERNAL::dbinom_raw(const
   double&, const double&, const double&, const double&)':
distributions.cc:2048: could not split insn
(insn:TI 454 450 91 (set (reg:DF 23 rxmm2 [58])
        (if_then_else:DF (eq (mem:DF (reg/v/u/f:DI 3 rbx [59]) [5 S8 A64])
                (reg:DF 23 rxmm2 [58]))
            (reg:DF 21 rxmm0 [160])
            (const_double:DF 0 [0x0] 0 [0x0] 0 [0x0]))) 660 
{*sse_movdfcc_const0_3} (insn_list 76 (insn_list 450 (nil)))
    (expr_list:REG_DEAD (reg/v/u/f:DI 3 rbx [59])
        (expr_list:REG_DEAD (reg:DF 21 rxmm0 [160])
            (nil))))
distributions.cc:2048: Internal compiler error in final_scan_insn, at 
final.c:
   2624
Please submit a full bug report,
with preprocessed source if appropriate.
See <URL:http://bugzilla.redhat.com/bugzilla/> for instructions.
make: *** [distributions.o] Error 1
chmod: failed to get attributes of 
`/home/mfa/gilp/toolchain/R/asd05546/R-2.3.1/site-library/MCMCpack/libs/*': 
No such file or directory
ERROR: compilation failed for package 'MCMCpack'
** Removing 
'/home/mfa/gilp/toolchain/R/asd05546/R-2.3.1/site-library/MCMCpack'

The downloaded packages are in
    /tmp/RtmpZMSbbz/downloaded_packages
Warning message:
installation of package 'MCMCpack' had non-zero exit status in: 
install.packages("MCMCpack")
 >
====================================================================================

La version fran?aise suit le texte anglais.

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[Rd] package installation errors
Paul Gilbert