From ripley at stats.ox.ac.uk  Thu Apr 20 18:48:41 2017
From: ripley at stats.ox.ac.uk (Prof Brian Ripley)
Date: Thu, 20 Apr 2017 17:48:41 +0100
Subject: [Rd] Intel MKL compiling issue
In-Reply-To: <LOXP123MB115888589BCC98C692154A1CA51B0@LOXP123MB1158.GBRP123.PROD.OUTLOOK.COM>
References: <assp.1282c13225.1492604380.3239.81.camel@ipb-halle.de>
 <1492676507.12031.32.camel@iarc.fr>
 <LOXP123MB115888589BCC98C692154A1CA51B0@LOXP123MB1158.GBRP123.PROD.OUTLOOK.COM>
Message-ID: <f3ba35fa-9409-23b3-a9db-3c7165a060b4@stats.ox.ac.uk>

There is nothing here indicating any kind of error, so no way to give 
any insights ....

And please do follow the posting guide, including not posting HTML.

FWIW, I have tested R 3.4.0 RC (sic) with MKL 11.3, which is later than 
your 2013 ... (on x86_64 Fedora 24).


On 20/04/2017 10:39, jing hua zhao wrote:
> Dear R-developers,
>
>
> I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have been successful until R 3.3.3 but now it stops complaining about pcre though it worked without Intel MKL as follows,
>
>
> ./configure LDFLAGS=-L/genetics/data/software/lib CFLAGS=-fPIC -I/genetics/data/software/include --enable-R-shlib
>
>
> I have used,
>
>
> export MKL_NUM_THREADS=15
> export MKLROOT=/genetics/data/software/intel/composer_xe_2013.4.183/mkl
> export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$MKLROOT/lib/intel64
> /genetics/data/software/intel/composer_xe_2013.4.183/mkl/bin/mklvars.sh intel64
> CPPFLAGS="-I/genetics/data/software/include -L/genetics/data/software/lib" \
> ./configure --prefix=/genetics/data/software --enable-R-shlib --enable-threads=posix --with-lapack \
>  --with-blas="-fopenmp -m64 -I$MKLROOT/include -L$MKLROOT/lib/intel64 -lmkl_gf_lp64 -lmkl_gnu_thread -lmkl_core -lpthread -lm"
>
>
> Many thanks,
>
>
>
> Jing Hua
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>


-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Emeritus Professor of Applied Statistics, University of Oxford



[Rd] Intel MKL compiling issue
Prof Brian Ripley