From bill at insightful.com  Wed Jun 11 19:45:05 2008
From: bill at insightful.com (Bill Dunlap)
Date: Wed, 11 Jun 2008 10:45:05 -0700 (PDT)
Subject: [Rd] Routine and Deep testing with R CMD check
In-Reply-To: <alpine.LFD.1.10.0806111815130.30216@gannet.stats.ox.ac.uk>
References: <484FE9BE.2040904@mdacc.tmc.edu>
	<Pine.GSO.4.56.0806110911130.9359@devsun3201.insightful.com>
	<alpine.LFD.1.10.0806111815130.30216@gannet.stats.ox.ac.uk>
Message-ID: <Pine.GSO.4.56.0806111032390.9359@devsun3201.insightful.com>

On Wed, 11 Jun 2008, Prof Brian Ripley wrote:

> Bill Dunlap wrote:
> > It might be nice if check could print the time it took to do
> > each test.
>
> That's an existing request for various parts of the checking procedure.
> When the time to run a package check jumps up, it is sometimes tedious to
> find out where the time went.  But the tests are currently scripted by
> make, so difficult to produce timings portably.

In Splus, if you set options(verbose=TRUE), then the time
for each top level expression is printed to stdout (or
to a log file, depending on other options).  The Time:
line tells which top level expression it refers to and
whether the expression succeeded or failed.  E.g.,

   > options(verbose=TRUE)
      Time: Task #2 succeeded (Seconds = 0.01 CPU, 0.01 elapsed)
   > for(i in 1:1e5)log(i)
      Time: Task #3 succeeded (Seconds = 1.49 CPU, 1.5 elapsed)
   > for(i in 1:1e5) if (i==1e5) stop("i is too big") else log(i)
     Error: Problem: i is too big
   Problem: i is too big
   Use traceback() to see the call stack
      Time: Task #4 failed (Seconds = 3.18 CPU, 3.2 elapsed)

If R had this sort of logging then check could turn it on
when desired.

Splus also uses this logging mechanism to log calls to
read.table() and inputData(), to record the initial
value of .Random.seed, etc., so one can run a perl script
over the log file for a batch run to see if there were
significant problems and have enough information to
reproduce the problems found.

----------------------------------------------------------------------------
Bill Dunlap
Insightful Corporation
bill at insightful dot com

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[Rd] Routine and Deep testing with R CMD check
Bill Dunlap