From pgilbert@bank-banque-canada.ca  Thu Sep 19 15:32:08 2002
From: pgilbert@bank-banque-canada.ca (Paul Gilbert)
Date: Thu, 19 Sep 2002 10:32:08 -0400
Subject: problem with make fullcheck on Sparc Solaris 8
References: <3D88A9CB.6080105@stat.ohio-state.edu> 	<3D88B5B3.4CF0F7BB@bank-banque-canada.ca> <x28z1zp1n9.fsf@biostat.ku.dk>
Message-ID: <3D89DFE8.4C1D0725@bank-banque-canada.ca>

Peter 

> and also check whether survival has the R-ex subdirectory with the
> relevant contents.

No I don't think it does (and near as I can tell they are missing from
the tarball).

[86] /home/mfa/gilp/toolchain/R/SunOS-5.8/R-1.6.0/library/survival/R-ex
: ls
anova.coxph.R             kidney.R                  strata.R
as.date.R                 lines.survfit.R           summary.survfit.R
attrassign.R              mdy.date.R                Surv.R
clogit.R                  plot.cox.zph.R            survdiff.R
cluster.R                 plot.survfit.R            survexp.R
cox.zph.R                 predict.coxph.R           survfit.R
coxph.detail.R            predict.survreg.R         survobrien.R
coxph.R                   print.survfit.R           survreg.control.R
date.ddmmmyy.R            pspline.R                
survreg.distributions.R
date.mdy.R                pyears.R                  survreg.old.R
date.mmddyy.R             ratetable.R               survreg.R
date.mmddyyyy.R           residuals.coxph.R         tcut.R
frailty.R                 residuals.survreg.R       untangle.specials.R
is.ratetable.R            ridge.R
[87] /home/mfa/gilp/toolchain/R/SunOS-5.8/R-1.6.0/library/survival/R-ex
: 

Of course, I checked this last (I should know better by now). Below are
the answers to the first things I was suppose to check.

Paul

...
> > > arch     sparc
> > > os       solaris2.8
> > ...
> >
> > > running code in 'survival-Ex.R' ...bash: survival-Ex.R: No such file or
> > > directory
> > > mv: cannot access survival-Ex.Rout
> > > *** Error code 2
> > > make: Fatal error: Command failed for target `survival-Ex.Rout'
> >

> Thanks, but the problem was supposedly fixed by this change
> 
> Thu Sep 12 17:15:43 UTC 2002, hornik
>   Need 'R_LIBS=' when calling R CMD INSTALL.
>   R/src/library/Recommended Makefile.in,1.10
> 
> so a build of 2002-9-12 is not very informative.
> 
> Could you two please
> 
> a) Retry with a clean build (just in case)
I rebuilt from R-1.6.0beta_2002-09-17.tar.gz

> b) Tell us whether you have R_LIBS set

I get the same error with  R_LIBS not set, R_LIBS set to an empty
string, or set to my default location for libraries.

> c) Tell us whether you build in the source directory or separately

configure, make, and make fullcheck were done in the top level directory
as untarred from the tarball.

[62] /home/mfa/gilp/toolchain/R/SunOS-5.8/R-1.6.0 : ls `bin/R
RHOME`/library
base/        eda/         lqs/         mva/         rpart/       tcltk/
boot/        foreign/     MASS/        nlme/        spatial/     tools/
class/       grid/        methods/     nls/         splines/     ts/
cluster/     KernSmooth/  mgcv/        nnet/        stepfun/
ctest/       lattice/     modreg/      R.css        survival/
[63] /home/mfa/gilp/toolchain/R/SunOS-5.8/R-1.6.0 : 

> (should be like this
> 
> [pd@butterfly BUILD]$ ls `bin/R RHOME`/library
> base     ctest    grid        MASS     mva   R.css    stepfun   ts
> boot     e1071    KernSmooth  methods  nlme  rpart    survival
> class    eda      lattice     mgcv     nls   spatial  tcltk
> cluster  foreign  lqs         modreg   nnet  splines  tools
> 
> )
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problem with make fullcheck on Sparc Solaris 8
Paul Gilbert