From murdoch at stats.uwo.ca  Mon Oct 16 22:28:57 2006
From: murdoch at stats.uwo.ca (Duncan Murdoch)
Date: Mon, 16 Oct 2006 16:28:57 -0400
Subject: [Rd] Build question Re:  PR#9295
In-Reply-To: <20061016194701.0CFDF561A2@slim.kubism.ku.dk>
References: <20061016194701.0CFDF561A2@slim.kubism.ku.dk>
Message-ID: <4533EB89.5050504@stats.uwo.ca>

On 10/16/2006 3:47 PM, watplatt at us.ibm.com wrote:
> I asked a question that might help me track down what changed between 
> 2.3.1 that did build and the 2.4.0 version that will not build.  

Actually, I think your message came through as a bug report, suggesting 
you were expecting someone else to fix it.

Perhaps now that it's clear that you are asking a question, someone will 
be able to help:  but surely you have access to better AIX tech support 
than most people on this list?

Duncan Murdoch

Some of
> the undefined names the linker was complaining about looked like #define 
> symbols that were not picked up by configure.  The first thing I was 
> hoping for was to find out if this problem looked familiar?  Whether or 
> not, I'm willing to try to work on it, but hope I can get reasonable 
> answers to honest questions....
> 
> Dan
> 
> Saw:
> 
> IBM employee is unable to make AIX work: so why does he expect us to?
> 
> in response to:
> 
> From: watplatt at us.ibm.com
> To: R-bugs at biostat.ku.dk
> Subject: Unable to build
> Date: Fri, 13 Oct 2006 21:42:37 +0200 (CEST)
> 
> Full_Name: Daniel E. Platt
> Version: 2.4.0
> OS: AIX 5.3
> Submission from: (NULL) (129.34.20.23)
> 
> 
> Did a new build of gcc c,c++,gfortran v4.1.1, (re)built R 2.3.1 using
> config.site as spec'd in R-admin.pdf in sec C.9 as described by Jagat 
> Sheth,
> with addition of FC=gfortran (configure tried using f95, which is present 
> on the
> system, but won't bind with gcc's obj files).
> 
> 
> Applying the same to 4.1.1 produces the following:
> 
> make[4]: Leaving directory 
> `/geno4/watplatt/R/R-2.4.0/src/library/tools/src'
> Error in dyn.load(x, as.logical(local), as.logical(now)) : 
>         unable to load shared library
> '/geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so':
>   rtld: 0712-001 Symbol TYPEOF was referenced
>       from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(), 
> but a
> runtime definition
>       of the symbol was not found.
> rtld: 0712-001 Symbol Rf_error was referenced
>       from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(), 
> but a
> runtime definition
>       of the symbol was not found.
> rtld: 0712-001 Symbol Rf_asLogical was referenced
>       from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(), 
> but a
> runtime definition
>       of the symbol was not found.
> rtld: 0712-001 Symbol LENGTH was referenced
>       from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(), 
> but a
> runtime definition
>       of the symbol was not found.
> rtld: 0712-001 Symbol STRING_ELT was referenced
>       from module /geno4/watplatt/R/R-2.4.0/library/tools/libs/tools.so(), 
> bu
> Execution halted
> make[3]: *** [all] Error 1
> make[3]: Leaving directory `/geno4/watplatt/R/R-2.4.0/src/library/tools'
> make[2]: *** [R] Error 1
> make[2]: Leaving directory `/geno4/watplatt/R/R-2.4.0/src/library'
> make[1]: *** [R] Error 1
> make[1]: Leaving directory `/geno4/watplatt/R/R-2.4.0/src'
> make: *** [R] Error 1
> 
> Are there undefined #define's leaking in as code?
> 
> Dan
> 
> 
> 
> 
> Daniel E. Platt
> Bioinformatics and Pattern Discovery
> IBM T. J. Watson Research Center
> Yorktown Hgts, NY 10598
> (914)945-1388
> 	[[alternative HTML version deleted]]
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel




[Rd] Build question Re: PR#9295
Duncan Murdoch