From ligges at statistik.tu-dortmund.de  Thu Mar  5 23:17:51 2009
From: ligges at statistik.tu-dortmund.de (Uwe Ligges)
Date: Thu, 05 Mar 2009 23:17:51 +0100
Subject: [Rd] Package issue
In-Reply-To: <200903052046.n25KkEJu003595@yacko.mayo.edu>
References: <200903052046.n25KkEJu003595@yacko.mayo.edu>
Message-ID: <49B04F8F.3020501@statistik.tu-dortmund.de>

Terry,

1. R CMD build on your package reports at least two warnings for me.

2. R CMD check gives dozens of warnings even before the test cases where 
it already stops in gtest.R rather than anaything called gchol2.R.

3. There is no tests/gchol2.R  !!!

Perhaps you want to clean up some other issues or update the svn 
repository before you post again?

Best wishes,
Uwe



Terry Therneau wrote:
>  I've converted the bdsmatrix package (used by coxme) to the newer style of
> S4, and uploaded it.  It is in the pkg directory of survival, on r-forge.
> I'm stuck on something that is almost certainly a namespace issue. I've 
> borrowed liberally from Matrix (a big help) and read the documentation, and
> just upgraded to 2.8.1 - but still stuck.
> 
>   All the tests work when I run them "by hand", but tests/gchol2.R fails 
> when run from R CMD check.  The failure looks a lot like a method for
>     setMethod('diag', 'gchol')
> is not being found.  
> 
>  The NAMESPACE file exports diag, along with several other methods that
> do work.  Any help would be appreciated. 
> 
> 	Terry Therneau
> 
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[Rd] Package issue
Uwe Ligges