From jtuimala at csc.fi  Tue Jul 18 13:46:08 2006
From: jtuimala at csc.fi (jtuimala at csc.fi)
Date: Tue, 18 Jul 2006 13:46:08 +0200 (CEST)
Subject: [Rd] R-2.3.1.tar.gz does not contain VR bundle (PR#9084)
Message-ID: <20060718114608.6AB0C54ACD@slim.kubism.ku.dk>

Dear professor Ripley,

I downloaded the file from the CRAN mirrow at Austria, and it seemed very 
strange that nobody had noticed the same problem. But the same phenomenan 
appeared several times, so I was rather convinced that the file was missing.

I now double-checked this on another system, and the bundle is indeed in 
the source distribution, but for some reason it is not untarred 
successfully in Solaris 5.9. This is funny, because I've not noticed 
anything similar with R source distribution previously.

I'm sorry for any inconvenience, and conclude that the problem that was 
actually non-existenting is now solved.

Thank you for your help!

Jarno



On Tue, 18 Jul 2006, Prof Brian Ripley wrote:

> Where did you get this file from?
>
> The version on the CRAM master does contain the bundle (and did it not
> seem strange to you that no one had reported this in the 6 weeks that the
> version had been out if there was a problem?).
>
> gannet% wget http://cran.r-project.org/src/base/R-2/R-2.3.1.tar.gz
> --11:32:58--  http://cran.r-project.org/src/base/R-2/R-2.3.1.tar.gz
>           => `R-2.3.1.tar.gz'
> Resolving cran.r-project.org... 137.208.57.37
> Connecting to cran.r-project.org|137.208.57.37|:80... connected.
> HTTP request sent, awaiting response... 200 OK
> Length: 14,285,120 (14M) [application/x-tar]
>
> 100%[====================================>] 14,285,120   700.23K/s    ETA
> 00:00
>
> 11:33:14 (911.27 KB/s) - `R-2.3.1.tar.gz' saved [14285120/14285120]
>
> gannet% tar ztvf R-2.3.1.tar.gz | grep VR
> lrwxrwxrwx pd/bs             0 2006-06-01 09:25:04
> R-2.3.1/src/library/Recommended/VR.tgz -> VR_7.2-27.1.tar.gz
> -rwxr-sr-x pd/bs        478191 2006-05-18 10:14:01
> R-2.3.1/src/library/Recommended/VR_7.2-27.1.tar.gz
> gannet% md5sum R-2.3.1.tar.gz
> a1d6d8081af4c71006a6e5a3ed54e4da  R-2.3.1.tar.gz
>
>
> It is also possible that there is a bug in your tar, or a problem with
> your disc system when unpacking.
>
>
> On Tue, 18 Jul 2006, jarno.tuimala at csc.fi wrote:
>
>> Full_Name: Jarno Tuimala
>> Version: 2.3.1
>> OS: Solaris / Linux
>> Submission from: (NULL) (193.166.2.98)
>>
>>
>> Today I downloaded the latest source code release R-2.3.1.tar.gz, and it seems
>> not to contain the VR bundle. After running ./configure I get the following
>> error message:
>>
>> checking for recommended packages... ./src/library/Recommended/VR_*.tar.gz: No
>> such file or directory
>> no
>> configure: error: Some of the recommended packages are missing
>>   Use --without-recommended-packages if this was intentional
>> 39.99u 115.47s 3:02.64 85.1%
>>
>> There is a soft link to the newest version of bundle under
>> /src/library/Recommended, but the actual bundle is missing:
>>
>> drwx------   2 biosci   csc         1024 Jun  1 11:25 ./
>> drwx------  16 biosci   csc         1024 Jun  1 11:25 ../
>> -rw-------   1 biosci   csc           20 Apr 10 01:19 .cvsignore
>> lrwxrwxrwx   1 biosci   csc           18 Jul 18 12:42 boot.tgz ->
>> boot_1.2-24.tar.gz
>> -rw-------   1 biosci   csc       187471 Apr 10 01:29 boot_1.2-24.tar.gz
>> lrwxrwxrwx   1 biosci   csc           21 Jul 18 12:42 cluster.tgz ->
>> cluster_1.11.0.tar.gz
>> -rw-------   1 biosci   csc       210215 May 19 12:30 cluster_1.11.0.tar.gz
>> lrwxrwxrwx   1 biosci   csc           21 Jul 18 12:42 foreign.tgz ->
>> foreign_0.8-15.tar.gz
>> -rw-------   1 biosci   csc       300878 Apr 10 01:29 foreign_0.8-15.tar.gz
>> lrwxrwxrwx   1 biosci   csc           25 Jul 18 12:42 KernSmooth.tgz ->
>> KernSmooth_2.22-17.tar.gz
>> -rw-------   1 biosci   csc        26876 Apr 10 01:29 KernSmooth_2.22-17.tar.gz
>> lrwxrwxrwx   1 biosci   csc           21 Jul 18 12:42 lattice.tgz ->
>> lattice_0.13-8.tar.gz
>> -rw-------   1 biosci   csc       226490 Apr 19 05:05 lattice_0.13-8.tar.gz
>> -rw-------   1 biosci   csc         2394 Apr 10 01:19 Makefile.in
>> lrwxrwxrwx   1 biosci   csc           18 Jul 18 12:42 mgcv.tgz ->
>> mgcv_1.3-17.tar.gz
>> -rw-------   1 biosci   csc       263254 May 19 12:30 mgcv_1.3-17.tar.gz
>> lrwxrwxrwx   1 biosci   csc           18 Jul 18 12:42 nlme.tgz ->
>> nlme_3.1-73.tar.gz
>> -rw-------   1 biosci   csc       709014 May 23 05:05 nlme_3.1-73.tar.gz
>> lrwxrwxrwx   1 biosci   csc           19 Jul 18 12:42 rpart.tgz ->
>> rpart_3.1-29.tar.gz
>> -rw-------   1 biosci   csc       119319 Apr 19 05:05 rpart_3.1-29.tar.gz
>> lrwxrwxrwx   1 biosci   csc           20 Jul 18 12:42 survival.tgz ->
>> survival_2.26.tar.gz
>> -rw-------   1 biosci   csc       862822 May 21 05:05 survival_2.26.tar.gz
>> lrwxrwxrwx   1 biosci   csc           18 Jul 18 12:42 VR.tgz ->
>> VR_7.2-27.1.tar.gz
>>
>> Of course, this is easy to fix just by downloading and copying the VR bundle to
>> the correct place. But, maybe it could also be included in the latest source
>> code release?
>>
>> Best Regards,
>> Jarno Tuimala
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>>
>
> -- 
> Brian D. Ripley,                  ripley at stats.ox.ac.uk
> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
> University of Oxford,             Tel:  +44 1865 272861 (self)
> 1 South Parks Road,                     +44 1865 272866 (PA)
> Oxford OX1 3TG, UK                Fax:  +44 1865 272595
>



[Rd] R-2.3.1.tar.gz does not contain VR bundle (PR#9084)
jtuimala at csc.fi