From ripley at stats.ox.ac.uk  Sat Jan  6 09:10:51 2007
From: ripley at stats.ox.ac.uk (Prof Brian Ripley)
Date: Sat, 6 Jan 2007 08:10:51 +0000 (GMT)
Subject: [Rd] Can't load XML_1.4-0.zip in last R devel
In-Reply-To: <459F1E98.9070609@fhcrc.org>
References: <459F1E98.9070609@fhcrc.org>
Message-ID: <Pine.LNX.4.64.0701060800150.1307@gannet.stats.ox.ac.uk>

The package source file XML/R/zzz.R contains

      temp <- Sys.getenv("PATH")
  ...
      on.exit(Sys.putenv(temp))

and ?Sys.putenv says

Usage:

      Sys.putenv(...)

      ...: arguments in 'name=value' form, with 'value' coercible to a
           character string.

so I believe this needs (and needed) to be Sys.putenv(PATH=temp).

In 2.4.1 it fails to reset the path which was apparently the intention.
Now, my belief is that this kludge is no longer necessary as library() 
does the appropriate PATH setting (and uses Sys.putenv correctly).

It would have been helpful to make use of R's debugging tools yourself: 
this was not at all hard to find and not an R-devel issue AFAICS.


On Fri, 5 Jan 2007, Herve Pages wrote:

> Hi,
>
> I can't load XML_1.4-0.zip in last R devel (Windows):
>
>  R version 2.5.0 Under development (unstable) (2007-01-05 r40386)
>  Copyright (C) 2007 The R Foundation for Statistical Computing
>  ISBN 3-900051-07-0
>
>  R is free software and comes with ABSOLUTELY NO WARRANTY.
>  You are welcome to redistribute it under certain conditions.
>  Type 'license()' or 'licence()' for distribution details.
>
>    Natural language support but running in an English locale
>
>  R is a collaborative project with many contributors.
>  Type 'contributors()' for more information and
>  'citation()' on how to cite R or R packages in publications.
>
>  Type 'demo()' for some demos, 'help()' for on-line help, or
>  'help.start()' for an HTML browser interface to help.
>  Type 'q()' to quit R.
>
>  > install.packages('XML')
>  --- Please select a CRAN mirror for use in this session ---
>  trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.5/XML_1.4-0.zip'
>  Content type 'application/zip' length 1647612 bytes
>  opened URL
>  downloaded 1608Kb
>
>  package 'XML' successfully unpacked and MD5 sums checked
>
>  The downloaded packages are in
>          C:\Documents and Settings\biocbuild\Local
>  Settings\tmpdir\RtmpXybdrb\downloaded_packages
>  updating HTML package descriptions
>  > library(XML)
>  Error in Sys.putenv(names(x), as.character(unlist(x))) :
>          wrong type for argument
>  Error: .onLoad failed in 'loadNamespace' for 'XML'
>  Error: package/namespace load failed for 'XML'
>  >
>
>
> I don't get this with R devel from 2006-12-05:
>
>  R version 2.5.0 Under development (unstable) (2006-12-05 r40126)
>  Copyright (C) 2006 The R Foundation for Statistical Computing
>  ISBN 3-900051-07-0
>
>  R is free software and comes with ABSOLUTELY NO WARRANTY.
>  You are welcome to redistribute it under certain conditions.
>  Type 'license()' or 'licence()' for distribution details.
>
>    Natural language support but running in an English locale
>
>  R is a collaborative project with many contributors.
>  Type 'contributors()' for more information and
>  'citation()' on how to cite R or R packages in publications.
>
>  Type 'demo()' for some demos, 'help()' for on-line help, or
>  'help.start()' for an HTML browser interface to help.
>  Type 'q()' to quit R.
>
>  > install.packages('XML')
>  --- Please select a CRAN mirror for use in this session ---
>  trying URL 'http://cran.fhcrc.org/bin/windows/contrib/2.5/XML_1.4-0.zip'
>  Content type 'application/zip' length 1647612 bytes
>  opened URL
>  downloaded 1608Kb
>
>  package 'XML' successfully unpacked and MD5 sums checked
>
>  The downloaded packages are in
>          C:\Documents and Settings\biocbuild\Local
>  Settings\tmpdir\RtmpaIcdrb\downloaded_packages
>  updating HTML package descriptions
>  > library(XML)
>  >
>
>
> Cheers,
> H.
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595



[Rd] Can't load XML_1.4-0.zip in last R devel
Prof Brian Ripley