From charpent@bacbuc.dyndns.org  Mon Dec 18 19:48:43 2000
From: charpent@bacbuc.dyndns.org (charpent@bacbuc.dyndns.org)
Date: Mon, 18 Dec 2000 20:48:43 +0100 (MET)
Subject: [Rd] R 1.2.0 : logspline does not install from install.packages(). Missing #include | library ? (PR#775)
Message-ID: <200012181948.UAA25371@pubhealth.ku.dk>

Full_Name: Emmanuel Charpentier
Version: 1.2.0
OS: Linux 2.2.18 (Debian 2.2)
Submission from: (NULL) (193.251.31.31)


When trying "mass" installation of available packages, the package logspline
does not compile, at least when installed through
install.packages("logspline").

It seems that it is a small bug, such a missing #include <math.h> or -libm
linking switch ?

installation output follows (screen copy) :

> install.packages("logspline")
--20:39:02--  http://cran.r-project.org:80/src/contrib/PACKAGES
           => `/tmp/fileR2ef9S74b0dc51'
Connecting to cran.r-project.org:80... connected!
HTTP request sent, awaiting response... 200 OK
Length: 29,955 [text/plain]

    0K -> .......... .......... .........                        [100%]

20:39:03 (43.47 KB/s) - `/tmp/fileR2ef9S74b0dc51' saved [29955/29955]

--20:39:03--  http://cran.r-project.org:80/src/contrib/logspline_1.0-2.tar.gz
           => `/tmp/RinstdirR2ef9S66334873/logspline_1.0-2.tar.gz'
Connecting to cran.r-project.org:80... connected!
HTTP request sent, awaiting response... 200 OK
Length: 41,280 [application/x-tar]

    0K -> .......... .......... .......... ..........            [100%]

20:39:05 (31.57 KB/s) - `/tmp/RinstdirR2ef9S66334873/logspline_1.0-2.tar.gz'
saved [41280/41280]

Installing source package `logspline' ...
 libs
gcc -I/usr/lib/R/include  -I/usr/local/include -mieee-fp -D__NO_MATH_INLINES 
-fPIC  -g -O2 -c logsplin.c -o logsplin.o
g77   -fPIC  -g -O2 -c mpack.f -o mpack.o
ld: warning: cannot find entry symbol _start; defaulting to 08048080
logsplin.o: In function `logcensor':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:101: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:117: undefined reference to `pow'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:184: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:201: undefined reference to `log'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:207: undefined reference to `log'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:276: undefined reference to `log'
logsplin.o: In function `removeknot':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:334: undefined reference to
`sqrt'logsplin.o: In function `fits':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:350: undefined reference to `log'
logsplin.o: In function `iter':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:396: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:405: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:415: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:755: undefined reference to
`printf'
logsplin.o: In function `erroradjust':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:851: undefined reference to
`sqrt'logsplin.o: In function `likeli':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:890: undefined reference to `exp'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:915: undefined reference to `log'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:918: undefined reference to `log'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:924: undefined reference to `log'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:940: undefined reference to `log'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:946: undefined reference to `log'
logsplin.o:/tmp/R.INSTALL.12079/logspline/src/logsplin.c:959: more undefined
references to `log' follow
logsplin.o: In function `linsearch':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1055: undefined reference to
`floor'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1086: undefined reference to
`pow'logsplin.o: In function `onesearch':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1103: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1112: undefined reference to
`log'logsplin.o: In function `numbertester':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1141: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1144: undefined reference to
`pow'logsplin.o: In function `expin':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1199: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1205: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1207: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1207: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1208: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1208: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1210: undefined reference to
`exp'logsplin.o:/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1211: more
undefined references to `exp' follow
logsplin.o: In function `expin2':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1247: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1253: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1255: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1255: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1256: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1256: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1258: undefined reference to
`exp'logsplin.o:/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1259: more
undefined references to `exp' follow
logsplin.o: In function `dens33':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1290: undefined reference to
`log'logsplin.o: In function `fun2':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1451: undefined reference to
`exp'logsplin.o: In function `coeff':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1530: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1530: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1530: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1533: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1533: undefined reference to
`pow'logsplin.o:/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1533: more
undefined references to `pow' follow
logsplin.o: In function `knotplace':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1929: undefined reference to
`floor'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1933: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1951: undefined reference to
`floor'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1970: undefined reference to
`ceil'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1971: undefined reference to
`floor'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:1975: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2110: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2112: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2126: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2128: undefined reference to
`printf'
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2147: undefined reference to
`printf'
logsplin.o:/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2148: more undefined
references to `printf' follow
logsplin.o: In function `knotnumber':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2249: undefined reference to
`pow'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2255: undefined reference to
`ceil'
logsplin.o: In function `middle':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2443: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2445: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:2447: undefined reference to
`log'logsplin.o: In function `pqexp':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3037: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3039: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3040: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3043: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3045: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3045: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3046: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3046: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3049: undefined reference to
`exp'logsplin.o:/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3049: more
undefined re
ferences to `exp' follow
logsplin.o: In function `pqexpi':
/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3142: undefined reference to
`log'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3144: undefined reference to
`exp'/tmp/R.INSTALL.12079/logspline/src/logsplin.c:3146: undefined reference to
`exp'make: *** [logspline.so] Error 1
ERROR: Compilation failed for package `logspline'

Delete downloaded files (y/N)? 
The packages are in /tmp/RinstdirR2ef9S66334873
Warning messages: 
1: argument `lib' is missing: using /usr/lib/R/library in:
install.packages("logspline") 
2: Installation of package logspline had non-zero exit status in:
install.packages("logspline") 
> 


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[Rd] R 1.2.0 : logspline does not install from install.packages(). Missing #include | library ? (PR#775)
charpent@bacbuc.dyndns.org