From claudia.beleites at ipht-jena.de  Thu Apr 12 00:23:16 2012
From: claudia.beleites at ipht-jena.de (beleites,claudia)
Date: Thu, 12 Apr 2012 00:23:16 +0200
Subject: [Rd] Vignette questions
In-Reply-To: <CANROs4c7b5ThXTXRXt1BARYF1O3SG2s39X3iQEXHAVvjZQttaQ@mail.gmail.com>
References: <4F85EC88.8070604@mayo.edu>,
	<CANROs4c7b5ThXTXRXt1BARYF1O3SG2s39X3iQEXHAVvjZQttaQ@mail.gmail.com>
Message-ID: <A26E51EB75D20B4DAC8AEA2A883BF3997B50587DA5@uranus.ipht-jena.de>

Very quick & short answer:

I made the transition to  ./vignettes for hyperSpec (you can look at the source at r-forge) - it was a mess. It is almost working now (compression is missing, I'll have to figure out how to invoke ghostscript in an OS idependent way, qpdf doesn't give me the compression rates). 

I have .pdf is under version control only for those vignettes that I build externally (with the fake .Rnws that produce the proper indexing as vignette).  They are all (regardless whether BUILD and check affect them or not) in ./vignettes.
I think that strategy can at least partially solve the issue with non-Sweave vignettes as well as long as the result is a pdf.  
You may need to play with ./vignettes/.install_extras if additional, non pdf and non Rnw files are needed.


Best,

Claudia


________________________________________
Von: r-devel-bounces at r-project.org [r-devel-bounces at r-project.org] im Auftrag von Yihui Xie [xie at yihui.name]
Gesendet: Mittwoch, 11. April 2012 23:28
An: Terry Therneau
Cc: r-devel at r-project.org
Betreff: Re: [Rd] Vignette questions

For 1, you should run R CMD check on the tar ball (pkg_x.x.tar.gz)
from R CMD build instead of the source directory. R CMD build will
build the PDF vignette into the tar ball.

For 2, I have been confused by ./vignettes vs ./inst/doc since
./vignettes was introduced. I might be able to figure it out by
try-and-err but I never tried, and I'm still sticking to ./inst/doc.
At least you can exclude the Rnw source in .Rbuildignore so that R can
only stare at your PDF documents and sigh.

For 3, I remember some of us requested that R could also respect
entries of non-Sweave vignettes (like the ones in ./demo/00Index), but
this is not possible as far as I know. However, I can tell you a dark
voodoo seems to be still working: you can write your own index.html
under ./inst/doc with your own links to vignettes.

Regards,
Yihui
--
Yihui Xie <xieyihui at gmail.com>
Phone: 515-294-2465 Web: http://yihui.name
Department of Statistics, Iowa State University
2215 Snedecor Hall, Ames, IA



On Wed, Apr 11, 2012 at 3:41 PM, Terry Therneau <therneau at mayo.edu> wrote:
> Context: R2.15-0 on Ubuntu.
>
> 1. I get a WARNING from CMD check for "Package vignette(s) without
> corresponding PDF:
>  In this case the vignettes directory had both the pdf and Rnw; do I need to
> move the pdf to inst/doc?
>
>   I'm reluctant to add the pdf to the svn source on Rforge, per the usual
> rule that a code management system should not have both a primary source and
> a object dervived from it under version control.  However, if this is the
> suggested norm I could do so.
>
> 2. Close reading of the paragraph about vignette sources shows the following
> -- I think?  If I have a vignette that should not be rebuilt by "check" or
> "BUILD" I should put the .Rnw source and pdf in /inst/doc, and have the
> others that should be rebuilt in /vignettes.  This would include any that
> use "private R packages, screen snapshots, ...", or in my case one that
> takes just a little short of forever to run.
>
> 3. Do these unprocessed package also contribute to the index via
> \VignetteIndexEntry lines, or will I need to create a custom index?
>
> Terry Therneau
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

______________________________________________
R-devel at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-devel



[Rd] Vignette questions
beleites,claudia