From murdoch.duncan at gmail.com  Mon May 16 13:04:25 2011
From: murdoch.duncan at gmail.com (Duncan Murdoch)
Date: Mon, 16 May 2011 07:04:25 -0400
Subject: [Rd] RCMD check fails on "checkin installed package size"
In-Reply-To: <1C56F3EE22DF4F458FE02F58B96D4150555EA9F965@DJFEXMBX01.djf.agrsci.dk>
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	<1C56F3EE22DF4F458FE02F58B96D4150555EA9F8A3@DJFEXMBX01.djf.agrsci.dk>
	<4DCBCE6D.1050100@gmail.com>
	<1C56F3EE22DF4F458FE02F58B96D4150555EA9F965@DJFEXMBX01.djf.agrsci.dk>
Message-ID: <4DD104B9.5010306@gmail.com>

On 11-05-16 6:39 AM, Stefan McKinnon H?j-Edwards wrote:
> Hello Duncan,
>
> This is what I get:
> C:\Users\STME\Documents\R\win-library\2.13\AnnotationFuncs>du -k
> 209     ./doc
> 24      ./help
> 8       ./html
> 9       ./Meta
> 10      ./R
> 279     .

Assuming that this was the output when check ran it, I don't see why it 
didn't work from Rcmd check.

Duncan Murdoch

>
> Kind regards,
>
> Stefan McKinnon H?j-Edwards     Dept. of Genetics and Biotechnology
> PhD student                     Faculty of Agricultural Sciences
> stefan.hoj-edwards at agrsci.dk    Aarhus University
> Tel.: +45 8999 1291             Blichers All? 20, Postboks 50
> Web: www.iysik.com              DK-8830 Tjele
>                                  Tel.: +45 8999 1900
>                                  Web: www.agrsci.au.dk
>
>
>
> -----Oprindelig meddelelse-----
> Fra: Duncan Murdoch [mailto:murdoch.duncan at gmail.com]
> Sendt: 12. maj 2011 14:11
> Til: Stefan McKinnon H?j-Edwards
> Cc: Prof Brian Ripley; r-devel at r-project.org
> Emne: Re: [Rd] RCMD check fails on "checkin installed package size"
>
> On 11/05/2011 8:07 AM, Stefan McKinnon H?j-Edwards wrote:
>> Thanks. It worked.
>> I added the line "_R_CHECK_PKG_SIZES_=no" to /etc/Rcmd_environ (I am the only user of this computer).
>>
>> Regarding the 'du' executable, it is found in the first directory in the PATH environment variable and came with Rtools for R 2.13.
>
> R CMD check will try to run "du -k" while the current directory is the
> one where it just installed the package during the check.  If you do
> that from the command line, (i.e. install AnnotationFuncs, switch to
> RHOME/library/AnnotationFuncs, and run "du -k") what do you see as output?
>
> Duncan Murdoch
>> Kind regards,
>> Stefan McKinnon H?j-Edwards
>> PhD student
>> Dept. of Genetics and Biotechnology
>> Faculty of Agricultural Sciences
>> Aarhus University
>> Blichers All? 20, Postboks 50
>> DK-8830 Tjele
>>
>> Tel.: +45 8999 1291
>> Email: stefanm.edwards at agrsci.dk
>>
>> Tel.: +45 8999 1900
>> Web: www.agrsci.au.dk
>>
>>
>>
>>
>> -----Oprindelig meddelelse-----
>> Fra: Prof Brian Ripley [mailto:ripley at stats.ox.ac.uk]
>> Sendt: 11. maj 2011 13:51
>> Til: Stefan McKinnon H?j-Edwards
>> Cc: r-devel at r-project.org
>> Emne: Re: [Rd] RCMD check fails on "checkin installed package size"
>>
>> On Wed, 11 May 2011, Stefan McKinnon H?j-Edwards wrote:
>>
>>>   Hi,
>>>
>>>   When I run RCMD check on my package, I receive the following error:
>>>   C:\R-packages\AnnotationFuncs>RCMD check --no-vignettes AnnotationFuncs
>>>   * using log directory 'C:/R-packages/AnnotationFuncs/AnnotationFuncs.Rcheck'
>>>   * using R version 2.13.0 (2011-04-13)
>>>   * using platform: i386-pc-mingw32 (32-bit)
>>>   * using session charset: ISO8859-1
>>>   * using option '--no-vignettes'
>>>   * checking for file 'AnnotationFuncs/DESCRIPTION' ... OK
>>>   * this is package 'AnnotationFuncs' version '1.1.2'
>>>   * checking package name space information ... OK
>>>   * checking package dependencies ... OK
>>>   * checking if this is a source package ... OK
>>>   * checking for executable files ... OK
>>>   * checking whether package 'AnnotationFuncs' can be installed ... OK
>>>   * checking installed package size ...Error in if (total>   1024 * 5) { : missing
>>>   value where TRUE/FALSE needed
>>>   Execution halted
>>>
>>>
>>>   I am running it on Windows 7 (32-bit) and my PATH environment variable starts with this:
>>>   C:\Rtools\bin;C:\Rtools\MinGW\bin;C:\Program Files\R\R-2.13.0\bin\i386;
>>>
>>>   I have updated Rtools to the newest with 2.13.
>>>
>>>   Any suggestions?
>>
>> Set _R_CHECK_PKG_SIZES_ to 'no' (see 'Writing R Extensions' and its
>> references on customizing R CMD check), or correct your paths so the
>> 'du' program in Rtools is the one that is found.  (The only reported
>> example was from using a different 'du' program.)
>>
>> I believe that current R-patched works around this: R-devel definitely
>> does.
>>
>>>
>>>   Thanks in advanced,
>>>   Stefan McKinnon H?j-Edwards
>>>
>>>   ______________________________________________
>>>   R-devel at r-project.org mailing list
>>>   https://stat.ethz.ch/mailman/listinfo/r-devel
>>>
>>
>



[Rd] RCMD check fails on "checkin installed package size"
Duncan Murdoch