From t.jombart at imperial.ac.uk  Mon May 24 12:07:23 2010
From: t.jombart at imperial.ac.uk (Jombart, Thibaut)
Date: Mon, 24 May 2010 11:07:23 +0100
Subject: [Rd] S4 method defined but not used
In-Reply-To: <4BF8598A.6030707@fhcrc.org>
References: <0B75A6276180B546A1CA8D2B46E7580503362D5194@ICEXM3.ic.ac.uk>,
	<4BF8598A.6030707@fhcrc.org>
Message-ID: <0B75A6276180B546A1CA8D2B46E7580503362D5198@ICEXM3.ic.ac.uk>

Dear Martin,

thanks for giving it a try. I forgot to mention I had removed the .RData, and started R without using the .Rprofile. R --vanilla did not help.

However, I made another try on another computer with the same packages, R version, and OS, and I fail to reproduce this error.

Best regards

Thibaut
 
> Hi Thibaut --
>
> For what it's worth, I can't reproduce this problem, and in a new R
> session after library(adegenet) I have
>
>> sessionInfo()
> R version 2.11.0 Patched (2010-05-01 r51886)
> x86_64-unknown-linux-gnu
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices datasets  utils     methods   base
>
> other attached packages:
> [1] adegenet_1.2-4 MASS_7.3-5
>
> which has a different set of attached / loaded packages -- maybe you are
> picking up something from .RData or .Rprofile, and you need to start R
> with --vanilla?
>
> Martin



[Rd] S4 method defined but not used
Jombart, Thibaut