From andy_liaw at merck.com  Tue Mar 16 19:36:29 2004
From: andy_liaw at merck.com (Liaw, Andy)
Date: Tue Mar 16 19:37:33 2004
Subject: [Rd] make check failed for R-1.9.0alpha (2004-03-16) when link
 against Goto's BLAS
Message-ID: <3A822319EB35174CA3714066D590DCD504AF79D2@usrymx25.merck.com>

Dear all,

Has anyone seen the same problem?  I tried compiling R-1.9.0 alpha
(2004-03-16) on our Opteron box running SUSE Linux ES8.  I ran:

./configure --enable-R-shlib --with-blas=goto

and got:

  Source directory:          .
  Installation directory:    /usr/local

  C compiler:                gcc  -m64 -O2 -g -msse2 -march=k8 -Wall
--pedantic
  C++ compiler:              g++  -m64 -O2 -g -msse2 -march=k8 -Wall
--pedantic
  Fortran compiler:          g77  -m64 -O2 -g -msse2 -march=k8

  Interfaces supported:      X11, tcltk
  External libraries:        readline, BLAS(generic)
  Additional capabilities:   PNG, JPEG
  Options enabled:           shared library, R profiling

  Recommended packages:      yes

(The Goto BLAS is libgoto_opt64-r0.93.so.)

"make" ran fine, but "make check" failed with tail
tests/Examples/stats-Ex.Rout.fail giving:

> ## now see the effect of the explanatory variables
> data(Seatbelts)
> X <- Seatbelts[, c("kms", "PetrolPrice", "law")]
> X[, 1] <- log10(X[, 1]) - 4
> arima(log10(Seatbelts[, "drivers"]), c(1,0,0),
+       seasonal = list(order= c(1,0,0)), xreg = X)
Error in La.svd(x, nu, nv, method) : error code 3 from Lapack routine dgesdd
Execution halted

If I do "make clean" and re-configure without the Goto BLAS, then it passes
make check.  Does anyone know what I'm doing wrong?  Any help much
appreciated!

Best,
Andy


Andy Liaw, PhD
Biometrics Research      PO Box 2000, RY33-300     
Merck Research Labs           Rahway, NJ 07065
mailto:andy_liaw@merck.com        732-594-0820




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[Rd] make check failed for R-1.9.0alpha (2004-03-16) when link against Goto's BLAS
Liaw, Andy