From therne@u @end|ng |rom m@yo@edu  Fri Aug 23 20:19:08 2019
From: therne@u @end|ng |rom m@yo@edu (Therneau, Terry M., Ph.D.)
Date: Fri, 23 Aug 2019 13:19:08 -0500
Subject: [Rd] problem with R CMD check
Message-ID: <771925$c9e4e7@ironport10.mayo.edu>

For a new release of survival, I normally run? R CMD check for every one of the packages 
that depend on survival? (forewarned is forearmed).

I updated R-devel on the test machine this morning, and R CMD check --as-cran 
survival_3.0-9.tar.gz works as desired.

When I run the check routine on any other source file, however, downloaded from CRAN, it 
fails nearly immediately with a message like the following.

* installing *source* package ?addhazard? ...
** package ?addhazard? successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
==5550==ASan runtime does not come first in initial library list; you should eit
her link runtime to your application or manually preload it with LD_PRELOAD.
ERROR: lazy loading failed for package ?addhazard?
*

-------------------

Here is my Makevars file.? (The commented out lines are from an earlier date when I did 
use ASAN to find a memory leak.)
CFLAGS=? -g -O2 -Wall -pedantic -mtune=native

# Use the lines below for ASAN code
#CC= gcc -std=gnu99 -fsanitize=address -fno-omit-frame-pointer
#CFLAGS=? -fno-omit-frame-pointer -g -O2 -Wall -pedantic -mtune=native
#CXX = g++ -fsanitize=address -fno-omit-frame-pointer

-------
Any hints??? If all packages failed I would figure I had a global mistake, but why most?

Terry T.

 > sessionInfo()
R Under development (unstable) (2019-08-23 r77061)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.3 LTS

Matrix products: default
BLAS:?? /usr/local/src/R-devel/lib/libRblas.so
LAPACK: /usr/local/src/R-devel/lib/libRlapack.so

locale:
 ?[1] LC_CTYPE=en_US.UTF-8?????? LC_NUMERIC=C
 ?[3] LC_TIME=en_US.UTF-8??????? LC_COLLATE=C
 ?[5] LC_MONETARY=en_US.UTF-8??? LC_MESSAGES=en_US.UTF-8
 ?[7] LC_PAPER=en_US.UTF-8?????? LC_NAME=C
 ?[9] LC_ADDRESS=C?????????????? LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats???? graphics? grDevices utils???? datasets? methods base

loaded via a namespace (and not attached):
[1] compiler_3.7.0



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[Rd] problem with R CMD check
Therneau, Terry M., Ph.D.