From patrick.giraudoux at univ-fcomte.fr  Sun Nov  6 19:31:13 2011
From: patrick.giraudoux at univ-fcomte.fr (Patrick Giraudoux)
Date: Sun, 06 Nov 2011 19:31:13 +0100
Subject: [Rd] Error in gzfile(file,
 mode) when checking a package with rcmd check
In-Reply-To: <4EB6CA72.4090609@statistik.tu-dortmund.de>
References: <4E9A8CDF.70801@univ-fcomte.fr> <4E9A9D8E.1090304@univ-fcomte.fr>
	<4E9AA386.7010008@univ-fcomte.fr>
	<CANz9Z_Le2kOxm6GkGmeMnWjtB0DexLq6jSvQOJdCvNwHsSkzZQ@mail.gmail.com>
	<4EB6C807.30601@univ-fcomte.fr>
	<4EB6CA72.4090609@statistik.tu-dortmund.de>
Message-ID: <4EB6D271.1070300@univ-fcomte.fr>

Le 06/11/2011 18:57, Uwe Ligges a ?crit :
> On 06.11.2011 18:46, Patrick Giraudoux wrote:
>> Following Uwe Ligges' instructions (off list) I have updated Duncan
>> Murdoch's toolchain, with no effect. The trouble was solved when I moved
>> the package to a directory with a shorter path (U:\Documents and
>> Settings\pgiraudo\Bureau instead of U:\Documents and
>> Settings\pgiraudo\Mes documents\R\pgir_arch\pgirmess_arch\On work) and
>> then things went trough smoothly.
>
>
> It is really "Mes documents" or just what Microsoft translates this 
> way in the Windows Explorer? It may help to use the correct names then.

Looks like being "Mes documents" although I don't know how to check if 
it is translated or not on the system level. Actually the French 
translation of the English original "My Documents".

However I have tried moving the folder pgirmess one level up to

U:\Documents and Settings\pgiraudo\Bureau instead of U:\Documents and 
Settings\pgiraudo\Mes documents\R\pgir_arch\pgirmess_arch\

and then running rcmd check..... and.... it works (tried twice, both 
OK). Means "Mes documents" seems not to be the real cause, but the "On 
Work" directory. However, replacing "On Work" by "On_work" gives a 
failure as before. Conclusion: looks like if the "space" character is 
not the problem, but the length of the path or the number of embedded 
directories (?).

Patrick









>
> Anyway, I have seen another problem where non ASCII characters matter 
> and will digg...
>
> Best,
> Uwe Ligges
>
>
>> What puzzles me is that the "long" path did not make a problem until R
>> 2.13.1 (this is the directory in which I worked since years for package
>> development) and that something seems to have happened after upgrading
>> to R 2.13.2
>>
>> Anyway. The main thing: I have a way to package now.
>>
>> Patrick
>>
>>
>>
>>
>>
>>
>>
>> Le 16/10/2011 17:54, Joshua Wiley a ?crit :
>>> Hmm, I have not had any difficulty with 2.13.2 on
>>> x86_64-pc-mingw32/x64, but I do have trouble with R CMD check on R
>>> devel, as has another user now. It is never with building or
>>> installing, just the checking. In my case, the error comes when
>>> building the manual.
>>>
>>> 2011/10/16 Patrick Giraudoux<patrick.giraudoux at univ-fcomte.fr>:
>>>> Also have just tried to build the package with no preliminary 
>>>> check. The
>>>> package apparently builds OK, tar.gz as well as binary .zip. Really
>>>> looks
>>>> like the error has to do with the rcmd check command specifically...
>>>> May it
>>>> be a bug ? Suppose I am not the only one to have checked a package
>>>> since R
>>>> 2.13.2 has been delivered ?
>>>>
>>>> Patrick
>>>>
>>>>
>>>> Le 16/10/2011 11:02, Patrick Giraudoux a ?crit :
>>>>> PS: looks like if it has something to do with moving from R 2.13.1 
>>>>> to R
>>>>> 2.13.2, since I cannot even check earlier versions of the pgirmess
>>>>> package
>>>>> that where well checked and compiled under earlier R versions.
>>>>>
>>>>>
>>>>> Le 16/10/2011 09:50, Patrick Giraudoux a ?crit :
>>>>>> Hi,
>>>>>>
>>>>>> For the first time I have a strange behaviour when checking a 
>>>>>> package
>>>>>> before 'packaging' the code. Looks like a file cannot be read.
>>>>>>
>>>>>> rcmd check pgirmess
>>>>>>
>>>>>> * using log directory 'U:/Documents and Settings/pgiraudo/Mes
>>>>>> documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck'
>>>>>> * using R version 2.13.2 (2011-09-30)
>>>>>> * using platform: i386-pc-mingw32 (32-bit)
>>>>>> * using session charset: ISO8859-1
>>>>>> * checking for file 'pgirmess/DESCRIPTION' ... OK
>>>>>> * this is package 'pgirmess' version '1.5.2'
>>>>>> * checking package dependencies ... OK
>>>>>> * checking if this is a source package ... OK
>>>>>> * checking for .dll and .exe files ... OK
>>>>>> * checking whether package 'pgirmess' can be installed ... ERROR
>>>>>> Installation failed.
>>>>>> See 'U:/Documents and Settings/pgiraudo/Mes
>>>>>> documents/R/pgir_arch/pgirmess_arch/On
>>>>>> work/pgirmess.Rcheck/00install.out'
>>>>>> for details.
>>>>>>
>>>>>>
>>>>>> In '00install.out', I get:
>>>>>>
>>>>>> * installing *source* package 'pgirmess' ...
>>>>>> ** R
>>>>>> ** data
>>>>>> ** preparing package for lazy loading
>>>>>> ** help
>>>>>> *** installing help indices
>>>>>> ** building package indices ...
>>>>>> ** testing if installed package can be loaded Error in gzfile(file,
>>>>>> mode)
>>>>>> : cannot open the connection
>>>>>> Calls: %in% -> match -> installed.packages -> saveRDS -> gzfile
>>>>>> In addition: Warning message:
>>>>>> In gzfile(file, mode) :
>>>>>> cannot open compressed file
>>>>>> 'U:\DOCUME~1\Admin\LOCALS~1\Temp\RtmpwWcmem/libloc_U%3a%2fDocuments%20and%20Settings%2fpgiraudo%2fMes%20documents%2fR%2fpgir_arch%2fpgirmess_arch%2fOn%20work%2fpgirmess.RcheckVersion,Priority,Depends,Imports,LinkingTo,Suggests,Enhances,OS_type,License,Archs,Built.rds', 
>>>>>>
>>>>>>
>>>>>> probable reason 'No such file or directory'
>>>>>> Execution halted
>>>>>> ERROR: loading failed
>>>>>> * removing
>>>>>> 'U:/DOCUME~1/pgiraudo/MESDOC~1/R/PGIR_A~1/PGIRME~1/ONWORK~1/PGIRME~1.RCH/pgirmess' 
>>>>>>
>>>>>>
>>>>>>
>>>>>> Any hint welcome ! I am stuck on that.
>>>>>>
>>>>>> Patrick
>>>> ______________________________________________
>>>> R-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>>>
>>>
>>>
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>



[Rd] Error in gzfile(file, mode) when checking a package with rcmd check
Patrick Giraudoux