From kirill.mueller at ivt.baug.ethz.ch  Tue Apr 19 08:50:16 2016
From: kirill.mueller at ivt.baug.ethz.ch (=?UTF-8?Q?Kirill_M=c3=bcller?=)
Date: Tue, 19 Apr 2016 08:50:16 +0200
Subject: [Rd] S3 dispatch for S4 subclasses only works if variable
 "extends" is accessible from global environment
In-Reply-To: <CAOQ5NyfK-67N6yHgdP-_Nr8=i34d7zkiR9J6OYFnCtN6_A=fjA@mail.gmail.com>
References: <57156F2B.4000205@ivt.baug.ethz.ch>
	<CAOQ5NyfK-67N6yHgdP-_Nr8=i34d7zkiR9J6OYFnCtN6_A=fjA@mail.gmail.com>
Message-ID: <5715D528.6030101@ivt.baug.ethz.ch>

Thanks for looking into it, your approach sounds good to me. See also 
R_has_methods_attached() 
(https://github.com/wch/r-source/blob/42ecf5f492a005f5398cbb4c9becd4aa5af9d05c/src/main/objects.c#L258-L265).

I'm fine with Rscript not loading "methods", as long as everything works 
properly with "methods" loaded but not attached.


-Kirill


On 19.04.2016 04:10, Michael Lawrence wrote:
> Right, the methods package is not attached by default when running R
> with Rscript. We should probably remove that special case, as it
> mostly just leads to confusion, but that won't happen immediately.
>
> For now, the S4_extends() should probably throw an error when the
> methods namespace is not loaded. And the check should be changed to
> directly check whether R_MethodsNamespace has been set to something
> other than the default (R_GlobalEnv). Agreed?
>
> On Mon, Apr 18, 2016 at 4:35 PM, Kirill M?ller
> <kirill.mueller at ivt.baug.ethz.ch> wrote:
>> Scenario: An S3 method is declared for an S4 base class but called for an
>> instance of a derived class.
>>
>> Steps to reproduce:
>>
>>> Rscript -e "test <- function(x) UseMethod('test', x); test.Matrix <-
>>> function(x) 'Hi'; MatrixDispatchTest::test(Matrix::Matrix())"
>> Error in UseMethod("test", x) :
>>    no applicable method for 'test' applied to an object of class "lsyMatrix"
>> Calls: <Anonymous>
>> 1: MatrixDispatchTest::test(Matrix::Matrix())
>>
>>> Rscript -e "extends <- 42; test <- function(x) UseMethod('test', x);
>>> test.Matrix <- function(x) 'Hi'; MatrixDispatchTest::test(Matrix::Matrix())"
>> [1] "Hi"
>>
>> To me, it looks like a sanity check in line 655 of src/main/attrib.c is
>> making wrong assumptions, but there might be other reasons.
>> (https://github.com/wch/r-source/blob/780021752eb83a71e2198019acf069ba8741103b/src/main/attrib.c#L655-L656)
>>
>> Same behavior in R 3.2.4, R 3.2.5 and R-devel r70420.
>>
>>
>> Best regards
>>
>> Kirill
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>



[Rd] S3 dispatch for S4 subclasses only works if variable "extends" is accessible from global environment
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