From HDu at enh.org  Tue Apr 29 19:05:23 2008
From: HDu at enh.org (HDu at enh.org)
Date: Tue, 29 Apr 2008 19:05:23 +0200 (CEST)
Subject: [Rd] R code for weighted Deming regression? (PR#11334)
Message-ID: <20080429170523.A214D282EF48@mail.pubhealth.ku.dk>

Hi,

Any one has the code that I can borrow? Or any suggestions?

Highly appreciate.

Hongyan Du
=20


-----Original Message-----
From: r-devel-bounces at r-project.org
[mailto:r-devel-bounces at r-project.org] On Behalf Of alexcozzi at gmail.com
Sent: Tuesday, April 29, 2008 11:25 AM
To: r-devel at stat.math.ethz.ch
Cc: R-bugs at biostat.ku.dk
Subject: [Rd] crash in Mac.app (PR#11334)

Full_Name: Alex Cozzi
Version: 2.7
OS: OS X 10.4
Submission from: (NULL) (209.131.62.113)


Observed a crash while pressing ctrl-A and ESC in R.app


Date/Time:      2008-04-29 09:18:28.501 -0700
OS Version:     10.4.11 (Build 8S2167)
Report Version: 4

Command: R
Path:    /Applications/R.app/Contents/MacOS/R
Parent:  WindowServer [2784]

Version: R 2.7.0 GUI 1.24 (5102)

PID:    9213
Thread: 0

Exception:  EXC_BAD_ACCESS (0x0001)
Codes:      KERN_PROTECTION_FAILURE (0x0002) at 0x00000004

Thread 0 Crashed:
0   com.apple.CoreFoundation       	0x90872f9c __CFStorageFindByte +
23
1   com.apple.CoreFoundation       	0x90873069 __CFStorageFindByte +
228
2   com.apple.CoreFoundation       	0x90870d59
CFStorageGetValueAtIndex + 319
3   com.apple.AppKit               	0x9339c901 -[NSLayoutManager
intAttribute:forGlyphAtIndex:] + 182
4   com.apple.AppKit               	0x937232b7
-[NSTextView(NSKeyBindingCommands) moveRight:] + 1128
5   com.apple.AppKit               	0x93380e29 -[NSResponder
doCommandBySelector:] + 76
6   com.apple.AppKit               	0x93380cbc -[NSTextView
doCommandBySelector:] + 229
7   com.apple.AppKit               	0x93376448
-[NSKeyBindingManager(NSKeyBindingManager_MultiClients)
interpretEventAsCommand:forClient:] + 1932
8   com.apple.AppKit               	0x933749a9 -[NSTSMInputContext
interpretKeyEvents:] + 1157
9   com.apple.AppKit               	0x93373d50 -[NSView
interpretKeyEvents:] +
65
10  com.apple.AppKit               	0x93373c3e -[NSTextView
keyDown:] + 1061
11  org.R-project.R                	0x00030a88 -[RTextView keyDown:]
+ 319
(RTextView.m:259)
12  com.apple.AppKit               	0x933737c1 -[NSWindow
sendEvent:] + 7377
13  com.apple.AppKit               	0x93364f28 -[NSApplication
sendEvent:] +
5023
14  org.R-project.R                	0x00008f46 -[RController
doProcessEvents:] +
530 (RController.m:2201)
15  org.R-project.R                	0x00006350 -[RController
handleReadConsole:]
+ 126 (RController.m:1118)
16  org.R-project.R                	0x00010fa9 Re_ReadConsole + 494
(Rcallbacks.m:143)
17  org.R-project.R                	0x00018aed run_REngineRmainloop
+ 867
(Rinit.m:393)
18  org.R-project.R                	0x0001142a -[REngine runREPL] +
260
(REngine.m:181)
19  org.R-project.R                	0x00002e91 main + 795
(main.m:126)
20  org.R-project.R                	0x00002b5a _start + 216
21  org.R-project.R                	0x00002a81 start + 41

Thread 1:
0   libSystem.B.dylib              	0x90009cd7 mach_msg_trap + 7
1   com.apple.CoreFoundation       	0x9082d21b CFRunLoopRunSpecific
+ 2014
2   com.apple.CoreFoundation       	0x9082ca36 CFRunLoopRunInMode +
61
3   com.apple.Foundation           	0x92854c76 +[NSURLCache
_diskCacheSyncLoop:]
+ 206
4   com.apple.Foundation           	0x927f839c forkThreadForFunction
+ 123
5   libSystem.B.dylib              	0x90024227 _pthread_body + 84

Thread 2:
0   libSystem.B.dylib              	0x9001a1cc select + 12
1   com.apple.Foundation           	0x927f839c forkThreadForFunction
+ 123
2   libSystem.B.dylib              	0x90024227 _pthread_body + 84

Thread 3:
0   libSystem.B.dylib              	0x900248c7
semaphore_wait_signal_trap + 7
1   com.apple.Foundation           	0x9284e2fc -[NSConditionLock
lockWhenCondition:] + 39
2   com.apple.AppKit               	0x9336ce50 -[NSUIHeartBeat
_heartBeatThread:] + 377
3   com.apple.Foundation           	0x927f839c forkThreadForFunction
+ 123
4   libSystem.B.dylib              	0x90024227 _pthread_body + 84

Thread 4:
0   libSystem.B.dylib              	0x90009cd7 mach_msg_trap + 7
1   com.apple.CoreFoundation       	0x9082d21b CFRunLoopRunSpecific
+ 2014
2   com.apple.CoreFoundation       	0x9082ca36 CFRunLoopRunInMode +
61
3   com.apple.Foundation           	0x9282da40
+[NSURLConnection(NSURLConnectionInternal) _resourceLoadLoop:] + 259
4   com.apple.Foundation           	0x927f839c forkThreadForFunction
+ 123
5   libSystem.B.dylib              	0x90024227 _pthread_body + 84

Thread 5:
0   libSystem.B.dylib              	0x9001a1cc select + 12
1   libSystem.B.dylib              	0x90024227 _pthread_body + 84

Thread 6:
0   libSystem.B.dylib              	0x90026d5c kevent + 12
1   ...ple.CoreServices.CarbonCore 	0x90cb8c68 PrivateMPEntryPoint +
51
2   libSystem.B.dylib              	0x90024227 _pthread_body + 84

Thread 7:
0   libSystem.B.dylib              	0x900248c7
semaphore_wait_signal_trap + 7
1   ...ple.CoreServices.CarbonCore 	0x90cb8e0d MPWaitOnQueue + 198
2   com.apple.DesktopServices      	0x9271e943
TNodeSyncTask::SyncTaskProc(void*) + 143
3   ...ple.CoreServices.CarbonCore 	0x90cb8c68 PrivateMPEntryPoint +
51
4   libSystem.B.dylib              	0x90024227 _pthread_body + 84

Thread 0 crashed with X86 Thread State (32-bit):
  eax: 0x18361b90  ebx: 0x90872f93  ecx: 0x00000000  edx: 0x00000000
  edi: 0x18361bb0  esi: 0x00000002  ebp: 0xbffff3a8  esp: 0xbffff370
   ss: 0x0000001f  efl: 0x00010282  eip: 0x90872f9c   cs: 0x00000017
   ds: 0x0000001f   es: 0x0000001f   fs: 0x00000000   gs: 0x00000037

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/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLU.
dylib
0x92bb3000 - 0x92bb3fff com.apple.Carbon 10.4 (???)
/System/Library/Frameworks/Carbon.framework/Versions/A/Carbon
0x92bb5000 - 0x92bc5fff com.apple.ImageCapture 3.0.4
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ImageC
apture.framework/Versions/A/ImageCapture
0x92bd4000 - 0x92bdcfff com.apple.speech.recognition.framework 3.6
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Speech
Recognition.framework/Versions/A/SpeechRecognition
0x92be2000 - 0x92be8fff com.apple.securityhi 2.0.1 (24742)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Securi
tyHI.framework/Versions/A/SecurityHI
0x92bee000 - 0x92c7ffff com.apple.ink.framework 101.2.1 (71)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Ink.fr
amework/Versions/A/Ink
0x92c93000 - 0x92c97fff com.apple.help 1.0.3 (32.1)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Help.f
ramework/Versions/A/Help
0x92c9a000 - 0x92cb8fff com.apple.openscripting 1.2.5 (???)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/OpenSc
ripting.framework/Versions/A/OpenScripting
0x92cca000 - 0x92cd0fff com.apple.print.framework.Print 5.2 (192.4)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Print.
framework/Versions/A/Print
0x92cd6000 - 0x92d39fff com.apple.htmlrendering 66.1 (1.1.3)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HTMLRe
ndering.framework/Versions/A/HTMLRendering
0x92d60000 - 0x92da1fff com.apple.NavigationServices 3.4.4 (3.4.3)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Naviga
tionServices.framework/Versions/A/NavigationServices
0x92dc8000 - 0x92dd6fff com.apple.audio.SoundManager 3.9.1
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Carbon
Sound.framework/Versions/A/CarbonSound
0x92ddd000 - 0x92de2fff com.apple.CommonPanels 1.2.3 (73)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/Common
Panels.framework/Versions/A/CommonPanels
0x92de7000 - 0x930dcfff com.apple.HIToolbox 1.4.10 (???)
/System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/HITool
box.framework/Versions/A/HIToolbox
0x931e2000 - 0x931edfff com.apple.opengl 1.4.16
/System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
0x931f2000 - 0x9320dfff com.apple.DirectoryService.Framework 3.3
/System/Library/Frameworks/DirectoryService.framework/Versions/A/Directo
ryService
0x9327d000 - 0x9327dfff com.apple.Cocoa 6.4 (???)
/System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
0x9327f000 - 0x93935fff com.apple.AppKit 6.4.10 (824.45)
/System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
0x93cb6000 - 0x93d31fff com.apple.CoreData 91 (92.1)
/System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
0x93d6a000 - 0x93e23fff com.apple.audio.toolbox.AudioToolbox 1.4.7
/System/Library/Frameworks/AudioToolbox.framework/Versions/A/AudioToolbo
x
0x93e66000 - 0x93e66fff com.apple.audio.units.AudioUnit 1.4.2
/System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
0x93e68000 - 0x94029fff com.apple.QuartzCore 1.4.12
/System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
0x9406f000 - 0x940b0fff libsqlite3.0.dylib
/usr/lib/libsqlite3.0.dylib
0x940b8000 - 0x940f2fff libGLImage.dylib=20
/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGLIm
age.dylib
0x940f7000 - 0x9410dfff com.apple.CoreVideo 1.4.2
/System/Library/Frameworks/CoreVideo.framework/Versions/A/CoreVideo
0x942a1000 - 0x942b0fff libCGATS.A.dylib=20
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Fram
eworks/CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
0x942b7000 - 0x942c2fff libCSync.A.dylib=20
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Fram
eworks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
0x942c7000 - 0x942ebfff libPDFRIP.A.dylib=20
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Fram
eworks/CoreGraphics.framework/Versions/A/Resources/libPDFRIP.A.dylib
0x9430e000 - 0x94328fff libRIP.A.dylib=20
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Fram
eworks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
0x947cb000 - 0x94911fff com.apple.AddressBook.framework 4.0.6 (490)
/System/Library/Frameworks/AddressBook.framework/Versions/A/AddressBook
0x9499d000 - 0x949acfff com.apple.DSObjCWrappers.Framework 1.1
/System/Library/PrivateFrameworks/DSObjCWrappers.framework/Versions/A/DS
ObjCWrappers
0x949b3000 - 0x949dcfff com.apple.LDAPFramework 1.4.2 (69.1.1)
/System/Library/Frameworks/LDAP.framework/Versions/A/LDAP
0x949e2000 - 0x949f1fff libsasl2.2.dylib
/usr/lib/libsasl2.2.dylib
0x949f5000 - 0x94a1afff libssl.0.9.7.dylib
/usr/lib/libssl.0.9.7.dylib
0x94a26000 - 0x94a43fff libresolv.9.dylib
/usr/lib/libresolv.9.dylib
0x951fd000 - 0x952affff com.apple.WebKit 4525.18
/System/Library/Frameworks/WebKit.framework/Versions/A/WebKit
0x9531a000 - 0x953e1fff com.apple.JavaScriptCore 4525.17
/System/Library/Frameworks/JavaScriptCore.framework/Versions/A/JavaScrip
tCore
0x9541d000 - 0x95a0ffff com.apple.WebCore 4525.18.1
/System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/WebCor
e.framework/Versions/A/WebCore
0x9601f000 - 0x96021fff com.apple.ExceptionHandling 1.2 (???)
/System/Library/Frameworks/ExceptionHandling.framework/Versions/A/Except
ionHandling
0x9651f000 - 0x9654dfff libncurses.5.4.dylib
/usr/lib/libncurses.5.4.dylib
0x9657a000 - 0x96590fff libJapaneseConverter.dylib=20
/System/Library/CoreServices/Encodings/libJapaneseConverter.dylib
0x96f94000 - 0x96f94fff com.apple.vecLib 3.3.1 (vecLib 3.3.1)
/System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
0x9a6f0000 - 0x9a70dfff com.apple.OpenTransport 3.0
/System/Library/PrivateFrameworks/OpenTransport.framework/OpenTransport
0x9aaca000 - 0x9aae0fff libCFilter.A.dylib=20
/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Fram
eworks/CoreGraphics.framework/Versions/A/Resources/libCFilter.A.dylib
0xeab00000 - 0xeab1cfff libConverter.dylib=20
/System/Library/Printers/Libraries/libConverter.dylib

Model: MacBookPro2,2, BootROM MBP22.00A5.B01, 2 processors, Intel Core 2
Duo,
2.16 GHz, 2 GB
Graphics: ATI Radeon X1600, ATY,RadeonX1600, PCIe, 128 MB
Memory Module: BANK 0/DIMM0, 1 GB, DDR2 SDRAM, 667 MHz
Memory Module: BANK 1/DIMM1, 1 GB, DDR2 SDRAM, 667 MHz
AirPort: spairport_wireless_card_type_airport_extreme (0x168C, 0x87),
1.3.5
Bluetooth: Version 1.9.5f4, 2 service, 1 devices, 1 incoming serial
ports
Network Service: Built-in Ethernet, Ethernet, en0
Network Service: AirPort, AirPort, en1
Serial ATA Device: Hitachi HTS541612J9SA00, 111.79 GB
Parallel ATA Device: HL-DT-ST DVDRW GWA4080MA
USB Device: Built-in iSight, Micron, Up to 480 Mb/sec, 500 mA
USB Device: Apple Internal Keyboard / Trackpad, Apple Computer, Up to 12
Mb/sec,
500 mA
USB Device: Hub in Apple Pro Keyboard, Mitsumi Electric, Up to 12
Mb/sec, 500
mA
USB Device: USB-PS/2 Optical Mouse, B16_b_02, Up to 1.5 Mb/sec, 100 mA
USB Device: Apple Pro Keyboard, Mitsumi Electric, Up to 12 Mb/sec, 250
mA
USB Device: IR Receiver, Apple Computer, Inc., Up to 12 Mb/sec, 500 mA
USB Device: Bluetooth USB Host Controller, Apple, Inc., Up to 12 Mb/sec,
500 mA

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[Rd] R code for weighted Deming regression? (PR#11334)
HDu at enh.org