From MSchwartz at mn.rr.com  Sun Sep 17 17:13:52 2006
From: MSchwartz at mn.rr.com (Marc Schwartz)
Date: Sun, 17 Sep 2006 10:13:52 -0500
Subject: [Rd] pdf default version
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On Sat, 2006-09-16 at 20:26 +0100, Prof Brian Ripley wrote:
> On Fri, 15 Sep 2006, Marc Schwartz (via MN) wrote:
> 
> > On Fri, 2006-09-15 at 12:12 -0500, Kevin Wright wrote:
> >> R has had the ability to generate pdfs with transparent colors for a
> >> couple of years now using pdf(..., version="1.4").
> 
> I presume we are talking about translucency aka semitransparency (alpha 
> channel strictly between 0 and 1) here, introduced in R 2.0.0: support for 
> col="transparent" is much older.
> 
> >> By default, Sweave uses just 'pdf' (without version 1.4), so a hack is
> >> needed when using Sweave to create pdfs with transparent colors.  See
> >> http://tolstoy.newcastle.edu.au/R/help/04/11/6655.html
> >>
> >> I would find my work process simpler if R defaulted to generating PDFs
> >> using version="1.4".  The help page for R's pdf command says there is
> >> a risk of some older pdf viewers not being able to view newer PDFs.
> >> Does anyone have a feeling for how big a risk this is?  I tried for a
> >> while to search google for pdf metadata and the distribution of pdf
> >> documents of different versions, but could find nothing useful to
> >> report.
> >>
> >> The PDF 1.4 specification appears to have been published in November, 2001.
> 
> Both C99 and Fortran 90 are older, and compilers for them are not yet 
> universally available.  Many R users even use older OSes than that date. 
> Given Adobe's patchy support for non-popularist OSes, there are lots of 
> viewers from quite a while back out there (I found Acroread 4.05 on one of 
> our systems without looking very hard).  According to Distiller, PDF 1.4 
> was introduced in Acrobat 5, and 1.3 is still recommended as the lowest 
> common denominator.
> 
> >> Is updating pdf() to version="1.4" feasible?
> 
> In what sense: it does support that as an option?  As the default, no.
> 
> >> Discussions on this topic will be watched with interest.
> >>
> >> Kevin Wright
> >
> > Rather than globally changing R, wouldn't it be better to add another
> > option to Sweave?
> >
> > For example, one can already specify 'height' and 'width' arguments for
> > figures, why not a pdf version value?
> >
> > If I am reading it correctly, the relevant code from Sweave.R seems to
> > be within the RweaveLatexRuncode() function:
> >
> >  if(options$pdf){
> >       pdf(file=paste(chunkprefix, "pdf", sep="."),
> >           width=options$width, height=options$height)
> >
> > Could this not be modified to something like:
> >
> >  if(options$pdf){
> >       pdf(file=paste(chunkprefix, "pdf", sep="."),
> >           width=options$width, height=options$height,
> >           version = pdf.version)
> >
> > Then the call within the .Rnw file could be something like:
> >
> >  <<fig=true,width=6,height=4,pdf.version=1.4,include=false>>=
> 
> or even
> 
> \SweaveOpts{echo=FALSE, pdf.version=1.4}

Indeed.

> > I am presuming that I am oversimplifying the changes here as I have not
> > looked at the other code that would be affected by this change.
> 
> You would need to set a default value, and that's non-trivial due to lack 
> of documentation of Sweave options (the internals need to be told that the 
> option is NOLOG (non-logical) and not numeric).

Right, I had not reviewed the code where the options are actually set.

> > Comments?
> 
> That seems a much better approach, and I've added it for 2.4.0.
> 
> Howver, I think the ideal solution is for the driver to keep track 
> of the features used and set the version number accordingly.  I am not 
> sure why Paul did not do it that way (PDF viewers are supposed to ignore 
> non-conformant features), as if you use semitransparent colours you would 
> presumably like to see them where possible.  Also implemented for 2.4.0, 
> but with a warning that setting pdf(version=1.4) will suppress.

Terrific. Thank you!

Regards,

Marc




[Rd] pdf default version
Marc Schwartz