From jago at mclink.it  Mon Jul 25 17:22:05 2005
From: jago at mclink.it (stefano iacus)
Date: Mon, 25 Jul 2005 17:22:05 +0200
Subject: [Rd] R Cocoa GUI 1.12 (R 2.1.1 Framework) crashes on acf()
	(PR#8032)
In-Reply-To: <BF09E712.4CDC%roberto@evafunds.com>
References: <BF09E712.4CDC%roberto@evafunds.com>
Message-ID: <7D7F1215-5227-4EFB-B240-D9053C380D12@mclink.it>

Hi Robert,
I'm following this to r-sig-mac and r-devel.
Btw, you said "any"  but do you have any chuck of R code to test as  
well?
example(acf) works for me.
stefano


On 25/lug/05, at 09:47, Roberto Osorio wrote:

> On 7/25/05 12:04 AM, "stefano iacus" <jago at mclink.it> wrote:
>
>
>> can you send us the crash report? I cannot reproduce it.
>> stefano
>>
>> On 25/lug/05, at 02:34, roberto at evafunds.com wrote:
>>
>>
>>> After I upgraded my installation of R for OS X (Tiger) to 1.12, it
>>> consistently crashes when calling the function acf() [stats lib].
>>>
>>> Roberto Osorio
>>>
>>> ______________________________________________
>>> R-devel at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>>
>>>
>>>
>>
>>
>
> Here it is. Thanks for looking at it.
>
> Roberto
>
> -------
>
> Date/Time:      2005-07-25 00:43:32.718 -0700
> OS Version:     10.4.2 (Build 8C46)
> Report Version: 3
>
> Command: R
> Path:    /Applications/R.app/Contents/MacOS/R
> Parent:  WindowServer [60]
>
> Version: 1.12 (1622)
>
> PID:    4330
> Thread: 0
>
> Exception:  EXC_BAD_ACCESS (0x0001)
> Codes:      KERN_INVALID_ADDRESS (0x0001) at 0xfdc07000
>
> Thread 0 Crashed:
> 0   libBLAS.dylib                      0x923fca6c ATL_thread_init + 64
> 1   libBLAS.dylib                      0x923f137c ATL_dptgemm + 200
> 2   libBLAS.dylib                      0x91e7f548  
> atl_f77wrap_dgemm__ + 104
> 3   libBLAS.dylib                      0x91e7e72c dgemm_ + 704
> 4   libR.dylib                         0x00214b8c matprod + 548
> (array.c:412)
> 5   libR.dylib                         0x00215418 do_matprod + 944
> (array.c:632)
> 6   libR.dylib                         0x00263b24 Rf_eval + 1536
> (eval.c:405)
> 7   libR.dylib                         0x00265b1c do_set + 224  
> (eval.c:1309)
> 8   libR.dylib                         0x00263970 Rf_eval + 1100
> (eval.c:382)
> 9   libR.dylib                         0x002652a4 do_begin + 136
> (eval.c:1058)
> 10  libR.dylib                         0x00263970 Rf_eval + 1100
> (eval.c:382)
> 11  libR.dylib                         0x00263970 Rf_eval + 1100
> (eval.c:382)
> 12  libR.dylib                         0x002652a4 do_begin + 136
> (eval.c:1058)
> 13  libR.dylib                         0x00263970 Rf_eval + 1100
> (eval.c:382)
> 14  libR.dylib                         0x00263fc0 Rf_applyClosure +  
> 952
> (eval.c:576)
> 15  libR.dylib                         0x00263b9c Rf_eval + 1656
> (eval.c:417)
> 16  libR.dylib                         0x00265b1c do_set + 224  
> (eval.c:1309)
> 17  libR.dylib                         0x00263970 Rf_eval + 1100
> (eval.c:382)
> 18  libR.dylib                         0x002652a4 do_begin + 136
> (eval.c:1058)
> 19  libR.dylib                         0x00263970 Rf_eval + 1100
> (eval.c:382)
> 20  libR.dylib                         0x00263fc0 Rf_applyClosure +  
> 952
> (eval.c:576)
> 21  libR.dylib                         0x00263b9c Rf_eval + 1656
> (eval.c:417)
> 22  org.R-project.R                    0x00014ff0  
> RGUI_ReplIteration + 500
> (crt.c:300)
> 23  org.R-project.R                    0x00014de0 RGUI_ReplConsole  
> + 148
> (crt.c:300)
> 24  org.R-project.R                    0x00014d34  
> run_REngineRmainloop + 156
> (crt.c:300)
> 25  org.R-project.R                    0x0000e1b4 -[REngine  
> runREPL] + 76
> (crt.c:300)
> 26  com.apple.Foundation               0x9287fcfc __NSFireTimer + 116
> 27  com.apple.CoreFoundation           0x9075edb0  
> __CFRunLoopDoTimer + 184
> 28  com.apple.CoreFoundation           0x9074b728 __CFRunLoopRun +  
> 1680
> 29  com.apple.CoreFoundation           0x9074acdc  
> CFRunLoopRunSpecific + 268
> 30  com.apple.HIToolbox                0x93123be0  
> RunCurrentEventLoopInMode
> + 264
> 31  com.apple.HIToolbox                0x93123274  
> ReceiveNextEventCommon +
> 380
> 32  com.apple.HIToolbox                0x931230e0
> BlockUntilNextEventMatchingListInMode + 96
> 33  com.apple.AppKit                   0x9361e1a4 _DPSNextEvent + 384
> 34  com.apple.AppKit                   0x9361de68 -[NSApplication
> nextEventMatchingMask:untilDate:inMode:dequeue:] + 116
> 35  com.apple.AppKit                   0x9361a3cc -[NSApplication  
> run] + 472
> 36  com.apple.AppKit                   0x9370ac1c NSApplicationMain  
> + 452
> 37  org.R-project.R                    0x00002dd0 _start + 392  
> (crt.c:267)
> 38  dyld                               0x8fe01048 _dyld_start + 60
>
> Thread 1:
> 0   libSystem.B.dylib                  0x9001efec select + 12
> 1   org.R-project.R                    0x0000435c -[RController  
> readThread:]
> + 524 (crt.c:300)
> 2   com.apple.Foundation               0x9287cf34  
> forkThreadForFunction +
> 108
> 3   libSystem.B.dylib                  0x9002c3d4 _pthread_body + 96
>
> Thread 2:
> 0   libSystem.B.dylib                  0x9004ca38  
> syscall_thread_switch + 8
> 1   com.apple.Foundation               0x92895330 +[NSThread
> sleepUntilDate:] + 152
> 2   com.apple.AppKit                   0x936bae60 -[NSUIHeartBeat
> _heartBeatThread:] + 1100
> 3   com.apple.Foundation               0x9287cf34  
> forkThreadForFunction +
> 108
> 4   libSystem.B.dylib                  0x9002c3d4 _pthread_body + 96
>
> Thread 3:
> 0   libSystem.B.dylib                  0x9002f68c kevent + 12
> 1   com.apple.DesktopServices          0x9278cad8
> TFSNotificationTask::FSNotificationTaskProc(void*) + 56
> 2   ...ple.CoreServices.CarbonCore     0x90b39690  
> PrivateMPEntryPoint + 76
> 3   libSystem.B.dylib                  0x9002c3d4 _pthread_body + 96
>
> Thread 4:
> 0   libSystem.B.dylib                  0x9002ca98  
> semaphore_wait_signal_trap
> + 8
> 1   libSystem.B.dylib                  0x9003127c pthread_cond_wait  
> + 508
> 2   ...ple.CoreServices.CarbonCore     0x90b39880 MPWaitOnQueue + 224
> 3   com.apple.DesktopServices          0x9278d330
> TNodeSyncTask::SyncTaskProc(void*) + 108
> 4   ...ple.CoreServices.CarbonCore     0x90b39690  
> PrivateMPEntryPoint + 76
> 5   libSystem.B.dylib                  0x9002c3d4 _pthread_body + 96
>
> Thread 5:
> 0   libSystem.B.dylib                  0x9000a778 mach_msg_trap + 8
> 1   libSystem.B.dylib                  0x9000a6bc mach_msg + 60
> 2   com.apple.CoreFoundation           0x9074b3d8 __CFRunLoopRun + 832
> 3   com.apple.CoreFoundation           0x9074acdc  
> CFRunLoopRunSpecific + 268
> 4   com.apple.Foundation               0x928a43e0
> +[NSURLConnection(NSURLConnectionInternal) _resourceLoadLoop:] + 264
> 5   com.apple.Foundation               0x9287cf34  
> forkThreadForFunction +
> 108
> 6   libSystem.B.dylib                  0x9002c3d4 _pthread_body + 96
>
> Thread 6:
> 0   libSystem.B.dylib                  0x9000a778 mach_msg_trap + 8
> 1   libSystem.B.dylib                  0x9000a6bc mach_msg + 60
> 2   com.apple.CoreFoundation           0x9074b3d8 __CFRunLoopRun + 832
> 3   com.apple.CoreFoundation           0x9074acdc  
> CFRunLoopRunSpecific + 268
> 4   com.apple.Foundation               0x928a5520 +[NSURLCache
> _diskCacheSyncLoop:] + 152
> 5   com.apple.Foundation               0x9287cf34  
> forkThreadForFunction +
> 108
> 6   libSystem.B.dylib                  0x9002c3d4 _pthread_body + 96
>
> Thread 7:
> 0   libSystem.B.dylib                  0x9000a778 mach_msg_trap + 8
> 1   libSystem.B.dylib                  0x9000a6bc mach_msg + 60
> 2   com.apple.CoreFoundation           0x9074b3d8 __CFRunLoopRun + 832
> 3   com.apple.CoreFoundation           0x9074acdc  
> CFRunLoopRunSpecific + 268
> 4   com.apple.Foundation               0x9288bec4 -[NSRunLoop
> runMode:beforeDate:] + 172
> 5   com.apple.Foundation               0x9288bdfc -[NSRunLoop run]  
> + 76
> 6   com.apple.WebKit                   0x958720a0 +[WebFileDatabase
> _syncLoop:] + 176
> 7   com.apple.Foundation               0x9287cf34  
> forkThreadForFunction +
> 108
> 8   libSystem.B.dylib                  0x9002c3d4 _pthread_body + 96
>
> Thread 0 crashed with PPC Thread State 64:
>   srr0: 0x00000000923fca6c srr1: 0x000000000200f030
> vrsave: 0x0000000000000000
>     cr: 0x42082242          xer: 0x0000000000000004   lr:  
> 0x00000000923fca64
> ctr: 0x0000000090030fdc
>     r0: 0x0000000054484441   r1: 0x00000000bfffb260   r2:  
> 0x00000000a1e7ca34
> r3: 0x00000000fdc07000
>     r4: 0x0000000000000001   r5: 0x0000000000000029   r6:  
> 0x0000000000000001
> r7: 0x0000000000000001
>     r8: 0x0000000000000029   r9: 0x00000000bfffb310  r10:  
> 0x000000009002b8b8
> r11: 0x00000000a1e76118
>    r12: 0x0000000090030fdc  r13: 0x0000000000000000  r14:  
> 0x0000000000000001
> r15: 0x00000000bfffb518
>    r16: 0x00000000bfffb57c  r17: 0x00000000bfffb56c  r18:  
> 0x00000000bfffb578
> r19: 0x0000000000000150
>    r20: 0x00000000bfffb56c  r21: 0x0000000000000150  r22:  
> 0x0000000000000010
> r23: 0x0000000014deace8
>    r24: 0x000000000000006f  r25: 0x000000000000006f  r26:  
> 0x0000000000000001
> r27: 0x0000000000000029
>    r28: 0x0000000014deae48  r29: 0x00000000bfffb310  r30:  
> 0x0000000000000001
> r31: 0x00000000923fca34
>
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> ImageCaptu
> re.framework/Versions/A/ImageCapture
> 0x92e6b000 - 0x92e7bfff com.apple.speech.recognition.framework 3.4
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> SpeechReco
> gnition.framework/Versions/A/SpeechRecognition
> 0x92e87000 - 0x92e9cfff com.apple.securityhi 2.0 (203)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> SecurityHI
> .framework/Versions/A/SecurityHI
> 0x92eae000 - 0x92f35fff com.apple.ink.framework 101.2 (69)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> Ink.framew
> ork/Versions/A/Ink
> 0x92f49000 - 0x92f54fff com.apple.help 1.0.3 (32)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> Help.frame
> work/Versions/A/Help
> 0x92f5e000 - 0x92f8bfff com.apple.openscripting 1.2.2 (???)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> OpenScript
> ing.framework/Versions/A/OpenScripting
> 0x92fa5000 - 0x92fb5fff com.apple.print.framework.Print 4.0 (187)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> Print.fram
> ework/Versions/A/Print
> 0x92fc1000 - 0x93027fff com.apple.htmlrendering 1.1.2
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> HTMLRender
> ing.framework/Versions/A/HTMLRendering
> 0x93058000 - 0x930aafff com.apple.NavigationServices 3.4.1 (3.4)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> Navigation
> Services.framework/Versions/A/NavigationServices
> 0x930d6000 - 0x930f3fff com.apple.audio.SoundManager 3.9
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> CarbonSoun
> d.framework/Versions/A/CarbonSound
> 0x93105000 - 0x93112fff com.apple.CommonPanels 1.2.2 (73)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> CommonPane
> ls.framework/Versions/A/CommonPanels
> 0x9311b000 - 0x9342bfff com.apple.HIToolbox 1.4.2 (???)
> /System/Library/Frameworks/Carbon.framework/Versions/A/Frameworks/ 
> HIToolbox.
> framework/Versions/A/HIToolbox
> 0x93576000 - 0x93582fff com.apple.opengl 1.4.0
> /System/Library/Frameworks/OpenGL.framework/Versions/A/OpenGL
> 0x93614000 - 0x93614fff com.apple.Cocoa 6.4 (???)
> /System/Library/Frameworks/Cocoa.framework/Versions/A/Cocoa
> 0x93616000 - 0x93c47fff com.apple.AppKit 6.4.1 (824.1)
> /System/Library/Frameworks/AppKit.framework/Versions/C/AppKit
> 0x93fd3000 - 0x9403dfff com.apple.CoreData 1.0 (46)
> /System/Library/Frameworks/CoreData.framework/Versions/A/CoreData
> 0x94075000 - 0x9413ffff com.apple.audio.toolbox.AudioToolbox 1.4.1
> /System/Library/Frameworks/AudioToolbox.framework/Versions/A/ 
> AudioToolbox
> 0x94193000 - 0x94193fff com.apple.audio.units.AudioUnit 1.4
> /System/Library/Frameworks/AudioUnit.framework/Versions/A/AudioUnit
> 0x94195000 - 0x942f4fff com.apple.QuartzCore 1.4.1
> /System/Library/Frameworks/QuartzCore.framework/Versions/A/QuartzCore
> 0x9433c000 - 0x94379fff libsqlite3.0.dylib     /usr/lib/ 
> libsqlite3.0.dylib
> 0x94381000 - 0x943ccfff libGLImage.dylib
> /System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/ 
> libGLImage.
> dylib
> 0x9456c000 - 0x9457bfff libCGATS.A.dylib
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ 
> Framewor
> ks/CoreGraphics.framework/Versions/A/Resources/libCGATS.A.dylib
> 0x94583000 - 0x9458ffff libCSync.A.dylib
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ 
> Framewor
> ks/CoreGraphics.framework/Versions/A/Resources/libCSync.A.dylib
> 0x945d4000 - 0x945e8fff libRIP.A.dylib
> /System/Library/Frameworks/ApplicationServices.framework/Versions/A/ 
> Framewor
> ks/CoreGraphics.framework/Versions/A/Resources/libRIP.A.dylib
> 0x94923000 - 0x94942fff com.apple.vecLib 3.1.1 (vecLib 3.1.1)
> /System/Library/Frameworks/vecLib.framework/Versions/A/vecLib
> 0x95870000 - 0x958fafff com.apple.WebKit 412.6
> /System/Library/Frameworks/WebKit.framework/Versions/A/WebKit
> 0x95954000 - 0x95a36fff com.apple.JavaScriptCore 412.3
> /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/ 
> JavaScript
> Core.framework/Versions/A/JavaScriptCore
> 0x95a8a000 - 0x95d78fff com.apple.WebCore 415.11
> /System/Library/Frameworks/WebKit.framework/Versions/A/Frameworks/ 
> WebCore.fr
> amework/Versions/A/WebCore
> 0x95ef9000 - 0x95f22fff libxslt.1.dylib     /usr/lib/libxslt.1.dylib
> 0x96210000 - 0x96212fff com.apple.ExceptionHandling 1.2 (???)
> /System/Library/Frameworks/ExceptionHandling.framework/Versions/A/ 
> ExceptionH
> andling
>
> Model: PowerBook5,4, BootROM 4.8.6f0, 1 processors, PowerPC G4   
> (1.2), 1.5
> GHz, 1 GB
> Graphics: ATI Mobility Radeon 9700, ATY,RV360M11, AGP, 128 MB
> Memory Module: SODIMM0/J25LOWER, 512 MB, DDR SDRAM, PC2700U-25330
> Memory Module: SODIMM1/J25UPPER, 512 MB, DDR SDRAM, PC2700U-25330
> AirPort: AirPort Extreme, 400.17 (3.90.34.0.p11)
> Modem: Jump, , V.92, Version 1.0,
> Bluetooth: Version 1.6.0f2, 2 service, 1 devices, 1 incoming serial  
> ports
> Network Service: AirPort, AirPort, en1
> PCI Card: TXN,PCIXXXX-00, cardbus, PC Card
> Parallel ATA Device: MATSHITADVD-R   UJ-835F,
> Parallel ATA Device: Hitachi HTS548080M9AT00, 74.53 GB
> USB Device: Bluetooth HCI, , Up to 12 Mb/sec, 500 mA
> USB Device: Apple Optical USB Mouse, Logitech, Up to 1.5 Mb/sec,  
> 500 mA
>
>
>



[Rd] R Cocoa GUI 1.12 (R 2.1.1 Framework) crashes on acf() (PR#8032)
stefano iacus