From jeff.laake at noaa.gov  Fri Mar  4 14:35:12 2016
From: jeff.laake at noaa.gov (Jeff Laake - NOAA Federal)
Date: Fri, 4 Mar 2016 05:35:12 -0800
Subject: [Rd] as.vector in R-devel loaded 3/3/2016
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Thanks. Indeed I was having a permission issue installing/updating packages
and had put a version of Matrix in my personal library which must have been
getting loaded ahead of the one in revel library. Sorry for the bother.

On Friday, March 4, 2016, Morgan, Martin <Martin.Morgan at roswellpark.org>
wrote:

> I see as below, where getGeneric and getMethod imply a different
> signature; the signature is mode="any" for both cases in R version 3.2.3
> Patched (2016-01-28 r70038)I don't know how to reproduce Jeff's error,
> though.
>
> > library(Matrix)
> > as.vector
> function (x, mode = "any")
> .Internal(as.vector(x, mode))
> <bytecode: 0xe79f88>
> <environment: namespace:base>
> > getGeneric("as.vector")
> standardGeneric for "as.vector" defined from package "base"
>
> function (x, mode)
> standardGeneric("as.vector")
> <bytecode: 0x29a6bd0>
> <environment: 0x299f988>
> Methods may be defined for arguments: x
> Use  showMethods("as.vector")  for currently available ones.
> > selectMethod("as.vector", "ANY")
> Method Definition (Class "internalDispatchMethod"):
>
> function (x, mode)
> .Internal(as.vector(x, mode))
> <environment: base>
>
> Signatures:
>         x
> target  "ANY"
> defined "ANY"
> > sessionInfo()
> R Under development (unstable) (2016-02-27 r70232)
> Platform: x86_64-pc-linux-gnu (64-bit)
> Running under: Ubuntu 14.04.4 LTS
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
>  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
>  [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] Matrix_1.2-4
>
> loaded via a namespace (and not attached):
> [1] grid_3.3.0      lattice_0.20-33
>
>
> ________________________________________
> From: R-devel <r-devel-bounces at r-project.org <javascript:;>> on behalf of
> Martin Maechler <maechler at stat.math.ethz.ch <javascript:;>>
> Sent: Friday, March 4, 2016 6:05 AM
> To: peter dalgaard
> Cc: r-devel at r-project.org <javascript:;>; Jeff Laake - NOAA Federal
> Subject: Re: [Rd] as.vector in R-devel loaded 3/3/2016
>
> >>>>> peter dalgaard <pdalgd at gmail.com <javascript:;>>
> >>>>>     on Fri, 4 Mar 2016 09:21:48 +0100 writes:
>
>     > Er, until _what_ is fixed?
>     > I see no anomalies with the version in R-pre:
>
> Indeed.
>
> The problem ... I also have stumbled over ..
> is that I'm sure Jeff is accidentally loading a different
> version of 'Matrix' than the one that is part of R-devel.
>
> Jeff you must accidentally be loading a version Matrix made with
> R 3.2.x in R 3.3.0  and that will fail with the as.vector()
> mismatch error message.
>
> (and IIRC, you also get such an error message if you load a
>  3.3.0-built version of Matrix into a non-3.3.0 version of R).
>
>
> Martin
>
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[Rd] as.vector in R-devel loaded 3/3/2016
Jeff Laake - NOAA Federal