From ripley at stats.ox.ac.uk  Fri May 16 11:59:36 2008
From: ripley at stats.ox.ac.uk (Prof Brian Ripley)
Date: Fri, 16 May 2008 10:59:36 +0100 (BST)
Subject: [Rd] Configure errors say to report here... (PR#11470)
In-Reply-To: <20080516044025.294D52834170@mail.pubhealth.ku.dk>
References: <20080516044025.294D52834170@mail.pubhealth.ku.dk>
Message-ID: <alpine.LFD.1.10.0805161052070.28443@auk.stats.ox.ac.uk>

What version are your Xcode tools?  What X11 do you have installed (I see 
/sw/include in your path, and that is not normally needed)?

Although configure says to report here, it is reporting a bug in your OS, 
not in R.  There will be more information in your config.log, (and perhaps 
some of it useful).

Where did all those gcc flags come from?  I don't see them in 'R 
Installation and Administration'. Perhaps leaving them off might solve the 
problem.

On Fri, 16 May 2008, adik at ilovebacon.org wrote:

> Hi,
>
> 	I'm attempting to compile R 2.7.0 on my G5, which is running OSX
> 10.5.2. Yes, I know there is a precompiled binary, but my experience has
> shown that if I hand-compile ATLAS on my machine and then link R against it
> when compiling, R runs faster, hence me compiling it myself.
>
> Anyway, I have this set of errors:
>
> checking X11/Intrinsic.h usability... no
> checking X11/Intrinsic.h presence... yes
> configure: WARNING: X11/Intrinsic.h: present but cannot be compiled
> configure: WARNING: X11/Intrinsic.h:     check for missing prerequisite headers?
> configure: WARNING: X11/Intrinsic.h: see the Autoconf documentation
> configure: WARNING: X11/Intrinsic.h:     section "Present But Cannot Be Compiled"
> configure: WARNING: X11/Intrinsic.h: proceeding with the preprocessor's result
> configure: WARNING: X11/Intrinsic.h: in the future, the compiler will take precedence
> configure: WARNING:     ## ----------------------------------- ##
> configure: WARNING:     ## Report this to r-bugs at R-project.org ##
> configure: WARNING:     ## ----------------------------------- ##
> ...
> checking X11/Xmu/Atoms.h usability... no
> checking X11/Xmu/Atoms.h presence... yes
> configure: WARNING: X11/Xmu/Atoms.h: present but cannot be compiled
> configure: WARNING: X11/Xmu/Atoms.h:     check for missing prerequisite headers?
> configure: WARNING: X11/Xmu/Atoms.h: see the Autoconf documentation
> configure: WARNING: X11/Xmu/Atoms.h:     section "Present But Cannot Be Compiled"
> configure: WARNING: X11/Xmu/Atoms.h: proceeding with the preprocessor's result
> configure: WARNING: X11/Xmu/Atoms.h: in the future, the compiler will take precedence
> configure: WARNING:     ## ----------------------------------- ##
> configure: WARNING:     ## Report this to r-bugs at R-project.org ##
> configure: WARNING:     ## ----------------------------------- ##
> ...
> checking tk.h usability... no
> checking tk.h presence... yes
> configure: WARNING: tk.h: present but cannot be compiled
> configure: WARNING: tk.h:     check for missing prerequisite headers?
> configure: WARNING: tk.h: see the Autoconf documentation
> configure: WARNING: tk.h:     section "Present But Cannot Be Compiled"
> configure: WARNING: tk.h: proceeding with the preprocessor's result
> configure: WARNING: tk.h: in the future, the compiler will take precedence
> configure: WARNING:     ## ----------------------------------- ##
> configure: WARNING:     ## Report this to r-bugs at R-project.org ##
> configure: WARNING:     ## ----------------------------------- ##
>
> ...the command line item I pass to configure is this:
>
> feta:R-2.7.0> ./configure --prefix=/usr/local --with-x --without-R-framework --without-aqua --with-blas="/usr/local/lib/libptf77blas.a /usr/local/lib/libatlas.a" --with-lapack="/usr/local/lib/liblapack.a /usr/local/lib/libptf77blas.a /usr/local/lib/libatlas.a" CFLAGS="-maltivec -mabi=altivec -mtune=970 -faltivec -O3" CXXFLAGS="-maltivec -mabi=altivec -mtune=970 -faltivec -O3"
>
> ...the rest of configure completes fine, though when I try to build R, I
> make eventually ends up failing in this manner:
>
> gcc -std=gnu99 -I. -I../../src/include -I../../src/include -I/sw/include
> -I/usr/
> local/include -DHAVE_CONFIG_H   -fPIC  -maltivec -mabi=altivec -mtune=970
> -falti
> vec -O3 -c cpoly.c -o cpoly.o
> cpoly.c: In function 'fxshft':
> cpoly.c:299: error: expected identifier or '(' before 'unsigned'
> cpoly.c:310: error: 'test' undeclared (first use in this function)
> cpoly.c:310: error: (Each undeclared identifier is reported only once
> cpoly.c:310: error: for each function it appears in.)
> cpoly.c:315: error: expected expression before '__attribute__'
> cpoly.c:326: error: expected expression before '__attribute__'
> cpoly.c:327: error: expected expression before '__attribute__'
> cpoly.c:334: error: expected expression before '__attribute__'
> cpoly.c:370: error: expected expression before '__attribute__'
> cpoly.c: In function 'vrshft':
> cpoly.c:394: error: two or more data types in declaration specifiers
> cpoly.c:394: error: expected identifier or '(' before ',' token
> cpoly.c:399: error: 'b' undeclared (first use in this function)
> cpoly.c:439: error: expected expression before '__attribute__'
> cpoly.c:440: error: expected expression before '__attribute__'
> cpoly.c:459: error: expected expression before '__attribute__'
> cpoly.c:460: error: expected expression before '__attribute__'
> cpoly.c:461: error: expected expression before '__attribute__'
> cpoly.c:462: error: expected expression before '__attribute__'
> cpoly.c: At top level:
> cpoly.c:476: error: expected ';', ',' or ')' before 'unsigned'
> cpoly.c:498: error: two or more data types in declaration specifiers
> cpoly.c:498: error: conflicting types for 'nexth'
> cpoly.c:81: error: previous declaration of 'nexth' was here
> cpoly.c: In function 'nexth':
> cpoly.c:498: error: parameter name omitted
> cpoly.c:506: error: expected expression before '__attribute__'
> make[3]: *** [cpoly.o] Error 1
> make[2]: *** [R] Error 2
> make[1]: *** [R] Error 1
> make: *** [R] Error 1
>
> ...the one reference to a problem like this I could find via google searches
> is the post at
>
> http://osdir.com/ml/lang.r.mac/2006-10/msg00016.html
>
> regarding R 2.4.0, which I could not find a response to.
>
> Any help is appreciated!
>
> Thanks,
> Adam Kramer
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595



[Rd] Configure errors say to report here... (PR#11470)
Prof Brian Ripley