From ligges@statistik.uni-dortmund.de  Thu Jun 13 07:59:04 2002
From: ligges@statistik.uni-dortmund.de (ligges@statistik.uni-dortmund.de)
Date: Thu, 13 Jun 2002 08:59:04 +0200 (MET DST)
Subject: fisher.test FEXACT memory bug "should not occur" (PR#1662)
Message-ID: <200206130659.IAA16339@pubhealth.ku.dk>

maechler@stat.math.ethz.ch wrote:
> 
> This is a bad bug as reported by Robin Hankin,
> it is still in "R-patched" ...
> 
> ##- From: Robin Hankin <r.hankin@auckland.ac.nz>
> ##- To: r-help@stat.math.ethz.ch
> ##- Subject: [R] possum sleeping: thanks and fisher.test() FEXACT error
> ##- Date: Thu, 13 Jun 2002 16:46:26 +1200
> 
> ## .....
> 
> ## Example slighlty modified (MM)
> 
> d4 <- matrix(c(0, 0, 0, 0, 0,  0, 3, 0, 1, 0,  0, 0, 0, 0, 0,
>                1, 0, 0, 0, 0,  1, 0, 0, 2, 0,  0, 0, 1, 0, 0,
>                0, 1, 0, 1, 0,  4, 0, 2, 0, 0,  0, 1, 0, 0, 0,  0, 0, 0, 0, 0,
>                0, 1, 0, 0, 2,  0, 0, 0, 2, 2,  0, 1, 0, 0, 0,
>                0, 0, 1, 1, 0,  0, 0, 0, 0, 0,  0, 1, 0, 0, 0,
>                1, 0, 0, 0, 2,  0, 0, 0, 3, 0,  0, 0, 0, 0, 1,  0, 0, 0, 0, 0,
>                2, 0, 0, 0, 0,  0, 0, 0, 0, 0,  0, 0, 1, 0, 1,
>                0, 0, 0, 0, 2,  0, 0, 0, 0, 8,  0, 0, 0, 3, 0,
>                0, 0, 0, 0, 0,  0, 0, 0, 0, 0,  0, 0, 0, 0, 0,  0, 0, 0, 0, 1,
>                0, 0, 1, 0, 0,  0, 0, 0, 0, 0,  2, 0, 0, 1, 0,
>                0, 2, 0, 0, 0,  0, 2, 0, 0, 1,  3, 0, 0, 0, 0,
>                0, 0, 0, 0, 0,  0, 0, 0, 0, 1,  0, 0, 1, 0, 0,  4, 0, 0, 0, 0),
>              nr=50)
> 
> fisher.test(d4)
> ##- Error in fisher.test(alldata[, 2:5]) : FEXACT error 30.
> ##- Stack length exceeded in f3xact.
> ##- This problem should not occur.

Just for the record:
  repeat try(fisher.test(d4))
results in a crash after a few iterations (R-1.5.0 patched on WinNT
4.0).

Uwe Ligges

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fisher.test FEXACT memory bug "should not occur" (PR#1662)
ligges@statistik.uni-dortmund.de