From svensmail at spray.se  Wed Oct  6 18:04:56 2004
From: svensmail at spray.se (svensmail@spray.se)
Date: Wed Oct  6 18:04:58 2004
Subject: [Rd] R2.0.0 bug in function vcov in library survival (PR#7266)
Message-ID: <20041006160456.19459EABC@slim.kubism.ku.dk>

Full_Name: Sven Sandin
Version: 2.0.0
OS: SuSE Linux 9.0
Submission from: (NULL) (81.227.17.135)


Have just compiled and installed R-2.0.0.tar.gz running SuSE9.0.

The function vcov do not accept "coxph" object as input any longer.

The same R-program running R1.9.1 do work. R-program attached below.

Exporting the coxph object from R2.0.0 to R1.9.1 I get vcov ouput in R1.9.1.
Exporting the coxph object from R1.9.1 to R2.0.0 I get errors in R2.0.0

=========== Copy of the R-program =======================
R : Copyright 2004, The R Foundation for Statistical Computing
Version 2.0.0  (2004-10-04), ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.

[Previously saved workspace restored]

> rm(list=ls())
> load("~/R/wlh0301/data/breast.RData")
> library(survival)
Loading required package: splines
> u2<-coxph(Surv(time,event) ~ age + cbmi + smoker + drink , data=breast.1)
> tmp <- vcov(u2)
Error in vcov(u2) : no applicable method for "vcov"
>
> class(u2)
[1] "coxph"


[Rd] R2.0.0 bug in function vcov in library survival (PR#7266)
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