From patrick.giraudoux at univ-fcomte.fr  Sun Nov  6 18:46:47 2011
From: patrick.giraudoux at univ-fcomte.fr (Patrick Giraudoux)
Date: Sun, 06 Nov 2011 18:46:47 +0100
Subject: [Rd] Error in gzfile(file,
 mode) when checking a package with rcmd check
In-Reply-To: <CANz9Z_Le2kOxm6GkGmeMnWjtB0DexLq6jSvQOJdCvNwHsSkzZQ@mail.gmail.com>
References: <4E9A8CDF.70801@univ-fcomte.fr> <4E9A9D8E.1090304@univ-fcomte.fr>
	<4E9AA386.7010008@univ-fcomte.fr>
	<CANz9Z_Le2kOxm6GkGmeMnWjtB0DexLq6jSvQOJdCvNwHsSkzZQ@mail.gmail.com>
Message-ID: <4EB6C807.30601@univ-fcomte.fr>

Following Uwe Ligges' instructions (off list) I have updated Duncan 
Murdoch's toolchain, with no effect. The trouble was solved when I moved 
the package to a directory with a shorter path (U:\Documents and 
Settings\pgiraudo\Bureau instead of U:\Documents and 
Settings\pgiraudo\Mes documents\R\pgir_arch\pgirmess_arch\On work) and 
then things went trough smoothly.

What puzzles me is that the "long" path did not make a problem until R 
2.13.1 (this is the directory in which I worked since years for package 
development) and that something seems to have happened after upgrading 
to R 2.13.2

Anyway. The main thing: I have a way to package now.

Patrick







Le 16/10/2011 17:54, Joshua Wiley a ?crit :
> Hmm, I have not had any difficulty with 2.13.2 on
> x86_64-pc-mingw32/x64, but I do have trouble with R CMD check on R
> devel, as has another user now.  It is never with building or
> installing, just the checking.  In my case, the error comes when
> building the manual.
>
> 2011/10/16 Patrick Giraudoux<patrick.giraudoux at univ-fcomte.fr>:
>> Also have just tried to build the package with no preliminary check. The
>> package apparently builds OK, tar.gz as well as binary .zip. Really looks
>> like the error has to do with the rcmd check command specifically... May it
>> be a bug ? Suppose I am not the only one to have checked a package since R
>> 2.13.2 has been delivered ?
>>
>> Patrick
>>
>>
>> Le 16/10/2011 11:02, Patrick Giraudoux a ?crit :
>>> PS: looks like if it has something to do with moving from R 2.13.1 to R
>>> 2.13.2, since I cannot even check earlier versions of the pgirmess package
>>> that where well checked and compiled under earlier R versions.
>>>
>>>
>>> Le 16/10/2011 09:50, Patrick Giraudoux a ?crit :
>>>> Hi,
>>>>
>>>> For the first time I have a strange behaviour when checking a package
>>>> before 'packaging' the code. Looks like a file cannot be read.
>>>>
>>>> rcmd check pgirmess
>>>>
>>>> * using log directory 'U:/Documents and Settings/pgiraudo/Mes
>>>> documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck'
>>>> * using R version 2.13.2 (2011-09-30)
>>>> * using platform: i386-pc-mingw32 (32-bit)
>>>> * using session charset: ISO8859-1
>>>> * checking for file 'pgirmess/DESCRIPTION' ... OK
>>>> * this is package 'pgirmess' version '1.5.2'
>>>> * checking package dependencies ... OK
>>>> * checking if this is a source package ... OK
>>>> * checking for .dll and .exe files ... OK
>>>> * checking whether package 'pgirmess' can be installed ... ERROR
>>>> Installation failed.
>>>> See 'U:/Documents and Settings/pgiraudo/Mes
>>>> documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck/00install.out'
>>>> for details.
>>>>
>>>>
>>>> In '00install.out',  I get:
>>>>
>>>> * installing *source* package 'pgirmess' ...
>>>> ** R
>>>> ** data
>>>> ** preparing package for lazy loading
>>>> ** help
>>>> *** installing help indices
>>>> ** building package indices ...
>>>> ** testing if installed package can be loaded Error in gzfile(file, mode)
>>>> : cannot open the connection
>>>> Calls: %in% ->  match ->  installed.packages ->  saveRDS ->  gzfile
>>>> In addition: Warning message:
>>>> In gzfile(file, mode) :
>>>>   cannot open compressed file
>>>> 'U:\DOCUME~1\Admin\LOCALS~1\Temp\RtmpwWcmem/libloc_U%3a%2fDocuments%20and%20Settings%2fpgiraudo%2fMes%20documents%2fR%2fpgir_arch%2fpgirmess_arch%2fOn%20work%2fpgirmess.RcheckVersion,Priority,Depends,Imports,LinkingTo,Suggests,Enhances,OS_type,License,Archs,Built.rds',
>>>> probable reason 'No such file or directory'
>>>> Execution halted
>>>> ERROR: loading failed
>>>> * removing
>>>> 'U:/DOCUME~1/pgiraudo/MESDOC~1/R/PGIR_A~1/PGIRME~1/ONWORK~1/PGIRME~1.RCH/pgirmess'
>>>>
>>>> Any hint welcome ! I am stuck on that.
>>>>
>>>> Patrick
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>
>



[Rd] Error in gzfile(file, mode) when checking a package with rcmd check
Patrick Giraudoux