From sfalcon at fhcrc.org  Fri Sep  2 18:08:06 2005
From: sfalcon at fhcrc.org (Seth Falcon)
Date: Fri, 02 Sep 2005 09:08:06 -0700
Subject: [Rd] R CMD check warning message "print.check_code_usage_in_package"
Message-ID: <m2oe7bpi55.fsf@macaroni.local>

We're seeing many warnings like this:

Warning: S3 method 'print.check_code_usage_in_package' was declared in
NAMESPACE but not found

But the package's NAMESPACE does not contain such a declaration.
Seeing this in many Bioconductor packages when running R CMD check on
Windows with R-devel built 1 Sept.

Below is a snip of the output from R CMD check.  Any ideas of what
this message is really trying to tell me?  

Thanks,

+ seth


* checking S3 generic/method consistency ... WARNING
Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... WARNING
Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found
In R, the argument of a replacement function which corresponds to the right
hand side must be named 'value'.
* checking foreign function calls ... WARNING
Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found
See section 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking Rd files ... WARNING
Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found
See chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for missing documentation entries ... WARNING
Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... WARNING
Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found
Warning: S3 method 'print.check_code_usage_in_package' was declared in NAMESPACE but not found



[Rd] R CMD check warning message "print.check_code_usage_in_package"
Seth Falcon