From mxkuhn at gmail.com  Wed Mar 16 02:59:31 2011
From: mxkuhn at gmail.com (Max Kuhn)
Date: Tue, 15 Mar 2011 21:59:31 -0400
Subject: [Rd] object not found whilst loading namespace
In-Reply-To: <AANLkTinPXqDcByoT3_pqjWcYnUqB50R-RrB-e_G2BSCB@mail.gmail.com>
References: <AANLkTinPXqDcByoT3_pqjWcYnUqB50R-RrB-e_G2BSCB@mail.gmail.com>
Message-ID: <AANLkTi=Ai_mZyfHcxgP-cnTecYmQQGGAzjxTaHW3v4y7@mail.gmail.com>

Please disregard the last email...

The issue was a syntactical error in a file that, alphabetically,
comes before confusionMatrix.R in the package.

The odd thing was that the problem in this file did not throw and
error (or I would have easily found it). I decided to source the R
files one by one to see if there were any issues and that showed the
problem:

> source("~/Code/caret/pkg/caret/R/classLevels.R")
Error in source("~/Code/caret/pkg/caret/R/classLevels.R") :
  ~/Code/caret/pkg/caret/R/classLevels.R:150:0: unexpected end of input

Thanks anyway,

Max



On Tue, Mar 15, 2011 at 9:48 PM, Max Kuhn <mxkuhn at gmail.com> wrote:
> I've been updating a package and, when installing a local devel
> version, I get an error "object 'confusionMatrix' not found whilst
> loading namespace". Looking around online, it appears that this might
> be related to loading a specific RData file, but it doesn't seem to be
> the case AFAICT.
>
> I've installed the devel version in the last week without issues and
> the confusionMatrix code has been touched in a while.
>
> Thanks,
>
> Max
>
>> sessionInfo()
> R version 2.11.1 (2010-05-31)
> x86_64-apple-darwin9.8.0
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] stats ? ? graphics ?grDevices utils ? ? datasets ?methods ? base
>
> other attached packages:
> [1] caret_4.71 ? ? reshape_0.8.3 ?plyr_1.2.1 ? ? lattice_0.18-8
>
> loaded via a namespace (and not attached):
> [1] grid_2.11.1
>
>
> pkg_kuhna03$ R CMD INSTALL caret
> * installing to library ?/Library/Frameworks/R.framework/Resources/library?
> * installing *source* package ?caret? ...
> ** libs
> *** arch - i386
> gcc -arch i386 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/i386
> -I/usr/local/include ? ?-fPIC ?-g -O2 -c caret.c -o caret.o
> gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names
> -undefined dynamic_lookup -single_module -multiply_defined suppress
> -L/usr/local/lib -o caret.so caret.o
> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
> -Wl,CoreFoundation
> installing to /Library/Frameworks/R.framework/Resources/library/caret/libs/i386
> *** arch - x86_64
> gcc -arch x86_64 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/x86_64
> -I/usr/local/include ? ?-fPIC ?-g -O2 -c caret.c -o caret.o
> gcc -arch x86_64 -std=gnu99 -dynamiclib
> -Wl,-headerpad_max_install_names -undefined dynamic_lookup
> -single_module -multiply_defined suppress -L/usr/local/lib -o caret.so
> caret.o -F/Library/Frameworks/R.framework/.. -framework R
> -Wl,-framework -Wl,CoreFoundation
> installing to /Library/Frameworks/R.framework/Resources/library/caret/libs/x86_64
> ** R
> ** data
> ** inst
> ** preparing package for lazy loading
> Loading required package: plyr
>
> Attaching package: 'reshape'
>
> The following object(s) are masked from 'package:plyr':
>
> ? ?round_any
>
> ** help
> *** installing help indices
> ** building package indices ...
> ** testing if installed package can be loaded
> Error : object 'confusionMatrix' not found whilst loading namespace 'caret'
> ERROR: loading failed
> * removing ?/Library/Frameworks/R.framework/Resources/library/caret?
> * restoring previous ?/Library/Frameworks/R.framework/Resources/library/caret?
>



[Rd] object not found whilst loading namespace
Max Kuhn