From ripley at stats.ox.ac.uk  Wed Jul  5 12:32:52 2006
From: ripley at stats.ox.ac.uk (Prof Brian Ripley)
Date: Wed, 5 Jul 2006 11:32:52 +0100 (BST)
Subject: [Rd] read.table() errors with tab as separator (PR#9061)
In-Reply-To: <x2veqcmlcs.fsf@viggo.kubism.ku.dk>
References: <20060705093501.8275353DBA@slim.kubism.ku.dk>
	<x2veqcmlcs.fsf@viggo.kubism.ku.dk>
Message-ID: <Pine.LNX.4.64.0607051128280.8003@gannet.stats.ox.ac.uk>

On Wed, 5 Jul 2006, Peter Dalgaard wrote:

> John.Maindonald at anu.edu.au writes:
>
>> (1) read.table(), with sep="\t", identifies 13 our of 1400 records,
>> in a file with 1400 records of 3 fields each, as having only 2 fields.
>> This happens under version 2.3.1 for Windows as well as with
>> R 2.3.1 for Mac OS X, and with R-devel under Mac OS X.
>> [R version 2.4.0 Under development (unstable) (2006-07-03 r38478)]
>>
>> (2) Using read.table() with sep="\t", the first 1569 records only
>> of a 1821 record file are input.  The file has exactly two fields
>> in each record, and the minimum length of the second field is
>> 1 character.  If however I extract lines 1561 to 1650 from the
>> file (the file "short.txt" below), all 90 lines are input.
>
> Notice that the single quote is a quote character in read.table (as
> opposed to read.delim, which uses only the double quote, to cater for
> TAB-separated files from Excel & friends).
>
>> [1] "865\tlinear model (lm)! Cook's distance\t152"
>                                   ^
>                                 !!!!
>
> (This reminds me that we probably should shift the default for
> comment.char too since it leads to similar issues, but it seems not to
> be the problem in this case.)

This seems to imply that we should change the default for 'quote': to do 
so could break a lot of scripts.  (Given how long the default has been
comment.char="#", I doubt if we should change that either.)

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595



[Rd] read.table() errors with tab as separator (PR#9061)
Prof Brian Ripley