From ripley at stats.ox.ac.uk  Sat Dec  8 23:16:20 2007
From: ripley at stats.ox.ac.uk (Prof Brian Ripley)
Date: Sat, 8 Dec 2007 22:16:20 +0000 (GMT)
Subject: [Rd] NAMESPACE choices for exporting S4 methods
In-Reply-To: <d4588dec0712081312u7c7c3393ibaa90c5f5cba16d9@mail.gmail.com>
References: <d4588dec0712081312u7c7c3393ibaa90c5f5cba16d9@mail.gmail.com>
Message-ID: <Pine.LNX.4.64.0712082149540.3635@gannet.stats.ox.ac.uk>

On Sat, 8 Dec 2007, Jay Emerson wrote:

> We are building a package, and want to create S4 methods for both head and
> mean for our own BigMatrix class.  Following the recommendation in "Writing
> R Extensions" we use exportMethods instead of export in NAMESPACE (this is
> described as being "clearer").  This works for head, but not for mean.
> Obviously we importFrom(utils, head), but don't need  to do this for mean,
> which is imported automatically from base.

And what is the error message?

> If we export(mean) rather than exportMethods(mean), it works as intended.
> A similar problem arises for a new generic function and an associated
> method, colmean, where the use of exportMethods(colmean) fails, but
> export(colmean) succeeds.
>
> We can build and use the package by using export instead of exportMethods,
> but we suspect that we're missing something that might be important to
> understand.
>
> Any hints or links to something we missed would be appreciated.

I know there are problems if you define a generic and no methods in a 
package (that is what stats4 does for AIC), but it doesn't sound as if 
that is what you are doing.  (Since the introduction of implicit generics 
- which may well apply to your mean() - it is possible to define a generic 
in a package without any methods stored there, not even a default method.)

I saw nothing in your description that is different from several other 
pacakges.  Without either the error messages or an example, we are reduced 
to guessing.  Can you make a minimal version available to us to look at?

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595



[Rd] NAMESPACE choices for exporting S4 methods
Prof Brian Ripley