From p.dalgaard at biostat.ku.dk  Sun May  4 10:13:00 2008
From: p.dalgaard at biostat.ku.dk (Peter Dalgaard)
Date: Sun, 04 May 2008 10:13:00 +0200
Subject: [Rd] error with R-patched (2008-05-02 r45591)
In-Reply-To: <alpine.LFD.1.10.0805040533220.15533@gannet.stats.ox.ac.uk>
References: <6b93d1830805031154s5da3602eq1dce01f35af3f76b@mail.gmail.com>	<alpine.LFD.1.10.0805032117530.9751@gannet.stats.ox.ac.uk>	<6b93d1830805032026n71b40f96y6bd16bf6e1562427@mail.gmail.com>
	<alpine.LFD.1.10.0805040533220.15533@gannet.stats.ox.ac.uk>
Message-ID: <481D700C.7090301@biostat.ku.dk>

Prof Brian Ripley wrote:
>> From the NEWS file for R-patchd:
>
> BUG FIXES
>
>     o    The parser sometimes accepted invalid quoted strings in a UTF-8
>         locale.
>
> This is likely to be the issue, but we still don't have a reproducible 
> example (see the posting guide).
>
As Brian probably already knows, the issue is likely to be that your 
source file is in a non-UTF-8 encoding. (Emacs has become a little too 
smooth in handling such files almost invisibly. The magic incantation is

C-x RET f utf-8

before saving.)

It can be reproduces as follows:

[pd at titmouse2 ~]$ cat > xxx.R
"???"
[pd at titmouse2 ~]$ iconv -t latin1 xxx.R > xxxx.R

and then R-patched gives

 > source("~/xxxx.R")
Error in source("~/xxxx.R") :
  invalid multibyte character in mbcs_get_next at line 1

whereas R-2.6.2 gives

 > source("xxxx.R")
 > .Last.value
$value
[1] "\xe6\xf8\xe5"

$visible
[1] TRUE





>
> On Sat, 3 May 2008, Mark Kimpel wrote:
>
>> I have found the cause of the problem I am having with R-patched. In my
>> .Rprofile I have a function that loads a bunch of my own functions, one
>> of which contains the character "?". No other version of R I have used
>> since writing this function ~2 yrs. ago has had a problem reading in 
>> this
>> character, but apparently R-patched does (invalid multibyte character in
>> mbcs_get_next at line 17).
>
> That is a parser error message.
>
>> Has something intentional or unintentional
>> occured to cause this? I suspect unintentional since this would seem to
>> be a loss of functionalilty unlikely to be introduced in a patch of a
>> release.
>>
>> Anyway, that's the issue, R-patched doesn't like "?".
>
> I get
>
>> "?"
> [1] "?"
>
> in R-patched in UTF-8.
>
>>
>> Mark
>>
>>
>> On Sat, May 3, 2008 at 4:20 PM, Prof Brian Ripley 
>> <ripley at stats.ox.ac.uk>
>> wrote:
>>       On Sat, 3 May 2008, Mark Kimpel wrote:
>>
>>             Just installed the latest R-patched and get the
>>             error seen at the end of the
>>             output below. Don't know what to make of this but
>>             thought I should report
>>             it.
>>
>>
>> Nor do we.  You have something incorrect in your startup files, but
>> we don't have those.
>>
>>       In general, when installing the latest version of R,
>>       should one use
>>       R-latest or R-patched? R-latest is stable, but one
>>       would assume that
>>       R-patched includes the latest bug fixes.
>>
>>
>> And you terminolgy is from where?  (Not e.g. the R FAQ.)
>>
>> Mark
>>
>> mkimpel-m90 ~/R_HOME/R-patched/R-build/bin: ./R
>>
>> R version 2.7.0 Patched (2008-05-02 r45591)
>> Copyright (C) 2008 The R Foundation for Statistical Computing
>> ISBN 3-900051-07-0
>>
>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>> You are welcome to redistribute it under certain conditions.
>> Type 'license()' or 'licence()' for distribution details.
>>
>>  Natural language support but running in an English locale
>>
>> R is a collaborative project with many contributors.
>> Type 'contributors()' for more information and
>> 'citation()' on how to cite R or R packages in publications.
>>
>> Type 'demo()' for some demos, 'help()' for on-line help, or
>> 'help.start()' for an HTML browser interface to help.
>> Type 'q()' to quit R.
>>
>> Loading required package: utils
>> [1] "packages do not need updated"
>> Error in source(source.files[i]) :
>>  invalid multibyte character in mbcs_get_next at line 17
>> [Previously saved workspace restored]
>>
>>       sessionInfo()
>>
>> R version 2.7.0 Patched (2008-05-02 r45591)
>> x86_64-unknown-linux-gnu
>>
>> locale:
>> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_ 
>>
>> MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;L 
>>
>> C_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats     graphics  grDevices datasets  utils     methods
>>   base
>>
>>
>> -- 
>> Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
>> Indiana University School of Medicine
>>
>> 15032 Hunter Court, Westfield, IN 46074
>>
>> (317) 490-5129 Work, & Mobile & VoiceMail
>> (317) 663-0513 Home (no voice mail please)
>>
>> ******************************************************************
>>
>>        [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>>
>> -- 
>> Brian D. Ripley,                  ripley at stats.ox.ac.uk
>> Professor of Applied Statistics,
>>  http://www.stats.ox.ac.uk/~ripley/
>> University of Oxford,             Tel:  +44 1865 272861 (self)
>> 1 South Parks Road,                     +44 1865 272866 (PA)
>> Oxford OX1 3TG, UK                Fax:  +44 1865 272595
>>
>>
>>
>>
>> -- 
>> Mark W. Kimpel MD ** Neuroinformatics ** Dept. of Psychiatry
>> Indiana University School of Medicine
>>
>> 15032 Hunter Court, Westfield, IN 46074
>>
>> (317) 490-5129 Work, & Mobile & VoiceMail
>> (317) 663-0513 Home (no voice mail please)
>>
>> ******************************************************************
>>
>
> ------------------------------------------------------------------------
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>   


-- 
   O__  ---- Peter Dalgaard             ?ster Farimagsgade 5, Entr.B
  c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
 (*) \(*) -- University of Copenhagen   Denmark      Ph:  (+45) 35327918
~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)              FAX: (+45) 35327907



[Rd] error with R-patched (2008-05-02 r45591)
Peter Dalgaard