From renaud at mancala.cbio.uct.ac.za  Mon Oct 31 13:23:33 2011
From: renaud at mancala.cbio.uct.ac.za (Renaud Gaujoux)
Date: Mon, 31 Oct 2011 14:23:33 +0200
Subject: [Rd] R CMD check and error in an \Sexpr in an Rd file
In-Reply-To: <4EAE926B.6040102@statistik.tu-dortmund.de>
References: <4EAAC0DF.7060704@cbio.uct.ac.za> <4EAAC1F3.8020505@gmail.com>
	<4EAAC96A.2020803@gmail.com> <4EAE90FC.7010200@cbio.uct.ac.za>
	<4EAE926B.6040102@statistik.tu-dortmund.de>
Message-ID: <4EAE9345.5000209@cbio.uct.ac.za>

I do not see it on main CRAN home page.
Do you mean http://cran.r-project.org/src/base-prerelease/R-latest.tar.gz ?

On 31/10/2011 14:19, Uwe Ligges wrote:
>
>
> On 31.10.2011 13:13, Renaud Gaujoux wrote:
>> Thank you Duncan.
>>
>> I tried with:
>> * using R version 2.14.0 RC (2011-10-24 r57417)
>> * using platform: x86_64-unknown-linux-gnu (64-bit)
>>
>> But I still get the errors for verbatim multiline and the strange error
>> if an error occurs in \Sexpr.
>> Is your patch included in this version? I will try now with
>> R-rc_2011-10-27_r57452.tar.gz.
>
> Try R-2.14.0, it is already released. Or R-devel.
>
> Best,
> Uwe Ligges
>
>
>>
>> Renaud
>>
>> On 28/10/2011 17:25, Duncan Murdoch wrote:
>>> On 28/10/2011 10:53 AM, Duncan Murdoch wrote:
>>>> On 28/10/2011 10:49 AM, Renaud Gaujoux wrote:
>>>> > Hi,
>>>> >
>>>> > another Rd related issue I encountered is that if an error occurs
>>>> in an
>>>> > \Sexpr in an Rd file, then on get the following error:
>>>> >
>>>> > * checking for portable compilation flags in Makevars ... OK
>>>> > * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) 
>>>> ... OK
>>>> > * checking examples ... ERROR
>>>> > Error in paste(before, x, after, sep = "") : object 'exfile' not 
>>>> found
>>>> > Execution halted
>>>> >
>>>> > To reproduce, put a call like this in an Rd section:
>>>> >
>>>> > \Sexpr[results=verbatim, stage=render]{x<- 1; stop("sexpr error")}
>>>> >
>>>> > The strange thing is that it occurs at the example checking step.
>>>> > Not sure why it does not break before.
>>>> >
>>>> > Thank you.
>>>> >
>>>> > Renaud
>>>> >
>>>> > PS: I am on R version 2.13.2 (2011-09-30) - x86_64-pc-linux-gnu
>>>> (64-bit)
>>>> >
>>>>
>>>> I would update to 2.13.2 patched, or the release candidate of 2.14.0.
>>>
>>> Oops, sorry, 2.13.2 is "final", so I didn't backport the patch. 2.14.0
>>> is what you should get.
>>>
>>> Duncan Murdoch
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel



[Rd] R CMD check and error in an \Sexpr in an Rd file
Renaud Gaujoux