From romain at r-enthusiasts.com  Thu May 20 09:20:44 2010
From: romain at r-enthusiasts.com (Romain Francois)
Date: Thu, 20 May 2010 09:20:44 +0200
Subject: [Rd] Use of R and Rscript in configure/Makevars in packages
In-Reply-To: <alpine.LFD.2.00.1005121542130.12002@gannet.stats.ox.ac.uk>
References: <alpine.LFD.2.00.1005121542130.12002@gannet.stats.ox.ac.uk>
Message-ID: <4BF4E2CC.7010501@r-enthusiasts.com>

Hello,

Thank you for these clear guidelines.

Given these subtleties, would it make sense to have a "configure.R" that 
would win over configure and configure.win, and have R invoking it 
correctly, as below ?

Romain

Le 20/05/10 08:51, Prof Brian Ripley a ?crit :
>
> We have seen problems with a number of packages which use R/Rscript to
> run R code in configure or makefiles.
>
> (a) You must give a full path: there need be no version of R in the
> path, and if there is it might not be the version/build of R under which
> package installation is being done. So the general form is to use
>
> ${R_HOME}/bin/R
>
> to select the right version. And since ${R_HOME} might contain spaces,
> you need something like "${R_HOME}/bin/R".
>
> There appear to be bare uses of Rscript in Rcpp RQuantLib bifactorial
> mvabund, of bare R in ROracle pgfSweave rcom and many more packages
> without quotes.
>
> (b) There are further issues with platforms which use sub-architectures
> (mainly Mac OS X and R-devel Windows). On Windows the
> architecture-dependent executables will (as from R 2.12.0) be in
> subdirectories of ${R_HOME}/bin, so the general form is to use one of
>
> "${R_HOME}/bin${R_ARCH_BIN}/Rscript.exe"
> "${R_HOME}/bin${R_ARCH_BIN}/Rterm.exe"
> "${R_HOME}/bin${R_ARCH_BIN}/Rcmd.exe"
>
> On R-devel Windows ${R_HOME}/bin/R.exe and ${R_HOME}/bin/Rscript.exe do
> exist and are 32-bit executables whose sole task is to launch the
> appropriate executable from a sub-directory. Since process creation is
> expensive on Windows, this intermediate step is best avoided.
>
> On Mac OS X, ${R_HOME}/bin/R is a script that launches the
> architecture-dependent executables from a subdirectory, and on CRAN
> builds ${R_HOME}/bin/Rscript is a 'fat' (multi-arch) executable, so the
> issues have been worked around (but not necessarily for user installs).
>
> (c) Calling R in configure.win will typically call 32-bit R with R-devel
> Windows. If the result needs to depend on the architecture (and e.g. the
> library dirs may well) then the work needs to be done in
> src/Makevars.win: see the R-devel 'Writing R Extensions' manual for how
> to achieve this.
>
> (The reason is that configure.win is called once, and then
> src/Makevars.win is called for each architecture.)
>
> BDR
>


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Romain Francois
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[Rd] Use of R and Rscript in configure/Makevars in packages
Romain Francois