From hpbenton at scripps.edu  Fri Nov 27 06:37:28 2009
From: hpbenton at scripps.edu (Homer Paul Benton)
Date: Thu, 26 Nov 2009 21:37:28 -0800
Subject: [Rd] compiling on snow leopard: Cocoa errors?!?!?!
In-Reply-To: <D6BABAFA-FB8D-478C-9C22-73A7AF84FF1A@r-project.org>
References: <DEBDCAAC-5571-4B11-A787-8CAEA2171C7B@scripps.edu>
	<7434A156-7BF1-4022-811C-E2184A5D79B7@r-project.org>
	<6B517824-FDB9-4907-99EA-0539AA59DF3D@scripps.edu>
	<D6BABAFA-FB8D-478C-9C22-73A7AF84FF1A@r-project.org>
Message-ID: <81809E86-D33F-4A7C-A446-AE0E2FE87202@scripps.edu>

Simon,

Thanks for your help. I uninstalled and reinstalled xcode and gfortran. I got it direct from the website this time :p All was happy on the configure and make install. 

Cheers,

Paul


On 27 Nov 2009, at 03:14, Simon Urbanek wrote:

> Paul,
> 
> On Nov 26, 2009, at 9:03 PM, Homer Paul Benton wrote:
> 
>> I'm currently using 
>> 
>> gcc --version
>> i686-apple-darwin8-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5564)
> 
> That is the wrong compiler - it's a Leopard compiler (Xcode 3.1/3.1.1 to be precise - see that it says darwin8 which is even 10.4 = Tiger!). Your Xcode seems to be seriously messed up -- I'd strongly recommend re-installing all Xcode 3.2 (run sudo gfortran-uninstall before you start) and Fortran (either the CRAN version or the Snow Leopard(!!) version from Tools).
> 
> 
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> This is free software; see the source for copying conditions.  There is NO
>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>> 
>> sh-3.2# gfortran --version
>> GNU Fortran (GCC) 4.2.1 (Apple Inc. build 5564)
>> Copyright (C) 2007 Free Software Foundation, Inc.
>> 
>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>> You may redistribute copies of GNU Fortran
>> under the terms of the GNU General Public License.
>> For more information about these matters, see the file named COPYING
>> 
>> 
>> and xcode 3.2 (1610)
>> 
>> At the risk of sounding stupid, I compiled the netCDF library and the compiliers seemed happy for that. ?!?!
>> 
> 
> NetCDF doesn't use anything from the system so even wrong compilers won't throw it off.
> 
> Cheers,
> Simon
> 
> 
>> Cheers,
>> 
>> Paul
>> 
>> I downloaded and 'installed' the 
>> 
>> On 27 Nov 2009, at 00:54, Simon Urbanek wrote:
>> 
>>> Paul,
>>> 
>>> at a first glance that seems like an issue in your system to me since  
>>> the errors come from system headers and not from our code. Which  
>>> compilers are you using and which Xcode version?
>>> 
>>> Cheers,
>>> Simon
>>> 
>>> 
>>> On Nov 26, 2009, at 1:16 PM, Homer Paul Benton wrote:
>>> 
>>>> Dear R-gurus,
>>>> 
>>>> I'm trying to compile R on my new mac. It's snow leopard. So far  
>>>> I've seemed to be doing pretty well. I've looked at
>>>> 
>>>> http://cran.r-project.org/bin/macosx/tools/
>>>> 
>>>> http://r.research.att.com/exp/
>>>> 
>>>> http://r.research.att.com/building.html
>>>> 
>>>> http://r.research.att.com/tools/
>>>> 
>>>> All of which have been very helpful. Looking at the threads I've got  
>>>> around some X11 issues that stopped the configure script working but  
>>>> now when I excute make I get the error below. Any ideas?
>>>> 
>>>> Thanks in advance,
>>>> 
>>>> Paul
>>>> 
>>>> R is now configured for i386-apple-darwin10.2.0
>>>> 
>>>> Source directory:          .
>>>> Installation directory:    /Library/Frameworks
>>>> 
>>>> C compiler:                gcc -arch x86_64 -std=gnu99  -g -O2
>>>> Fortran 77 compiler:       gfortran -arch x86_64  -g -O2
>>>> 
>>>> C++ compiler:              g++ -arch x86_64  -g -O2
>>>> Fortran 90/95 compiler:    gfortran -arch x86_64 -g -O2
>>>> Obj-C compiler:	     gcc -arch x86_64 -g -O2
>>>> 
>>>> Interfaces supported:      X11, aqua, tcltk
>>>> External libraries:        readline, BLAS(vecLib), LAPACK(in blas),  
>>>> ICU
>>>> Additional capabilities:   NLS
>>>> Options enabled:           framework, R profiling, Java
>>>> 
>>>> Recommended packages:      yes
>>>> 
>>>> sh-3.2# echo "./configure SHELL='/bin/bash' r_arch=x86_64 CC="gcc - 
>>>> arch x86_64 -std=gnu99" CXX="g++ -arch x86_64" OBJC="gcc -arch  
>>>> x86_64" F77="gfortran -arch x86_64" FC="gfortran -arch x86_64" -- 
>>>> with-system-zlib --with-blas='-framework vecLib' --with-lapack --x- 
>>>> includes='-I/usr/X11/include/X11' --x-libraries='-L/usr/X11/lib'  
>>>> X_LIBS=-L/usr/X11/lib" > ~/R/compileR.txt
>>>> 
>>>> 
>>>> sh-3.2# make
>>>> make[1]: Nothing to be done for `R'.
>>>> make[1]: Nothing to be done for `R'.
>>>> make[2]: Nothing to be done for `R'.
>>>> .....
>>>> ..... etc
>>>> building package 'tools'
>>>> all.R is unchanged
>>>> make[6]: `Makedeps' is up to date.
>>>> ../../../../library/tools/libs/x86_64/tools.so is unchanged
>>>> building package 'utils'
>>>> all.R is unchanged
>>>> make[4]: Nothing to be done for `iconvlist'.
>>>> building package 'grDevices'
>>>> all.R is unchanged
>>>> ../../../library/grDevices/R/grDevices is unchanged
>>>> gcc -arch x86_64 -I../../../../include -I../../../../include/x86_64 - 
>>>> I../../../include -I../../../../src/include -DHAVE_CONFIG_H -I/usr/ 
>>>> local/include   -fPIC  -g -O2 -c qdCocoa.m -o qdCocoa.o
>>>> In file included from /System/Library/Frameworks/ 
>>>> Foundation.framework/Headers/NSCharacterSet.h:8,
>>>>             from /System/Library/Frameworks/Foundation.framework/ 
>>>> Headers/Foundation.h:15,
>>>>             from /System/Library/Frameworks/Cocoa.framework/ 
>>>> Headers/Cocoa.h:12,
>>>>             from qdCocoa.h:39,
>>>>             from qdCocoa.m:24:
>>>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: 
>>>> 278: error: format string argument follows the args to be formatted
>>>> /System/Library/Frameworks/Foundation.framework/Headers/NSString.h: 
>>>> 280: error: format string argument follows the args to be formatted
>>>> In file included from /System/Library/Frameworks/ 
>>>> Foundation.framework/Headers/Foundation.h:25,
>>>>             from /System/Library/Frameworks/Cocoa.framework/ 
>>>> Headers/Cocoa.h:12,
>>>>             from qdCocoa.h:39,
>>>>             from qdCocoa.m:24:
>>>> /System/Library/Frameworks/Foundation.framework/Headers/ 
>>>> NSException.h:62: error: format string argument follows the args to  
>>>> be formatted
>>>> qdCocoa.m: In function '+[QuartzCocoaView  
>>>> quartzWindowWithRect:andInfo:]':
>>>> qdCocoa.m:90: warning: class 'QuartzCocoaView' does not implement  
>>>> the 'NSWindowDelegate' protocol
>>>> make[5]: *** [qdCocoa.o] Error 1
>>>> make[4]: *** [mksrc] Error 1
>>>> make[3]: *** [all] Error 2
>>>> make[2]: *** [R] Error 1
>>>> make[1]: *** [R] Error 1
>>>> make: *** [R] Error 1
>>>> ______________________________________________
>>>> R-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>>> 
>>>> 
>>> 
>> 
>> 
>> 
> 



[Rd] compiling on snow leopard: Cocoa errors?!?!?!
Homer Paul Benton