From pgilbert at bank-banque-canada.ca  Thu Aug 21 21:33:15 2008
From: pgilbert at bank-banque-canada.ca (Paul Gilbert)
Date: Thu, 21 Aug 2008 15:33:15 -0400
Subject: [Rd] rc  note, etc
Message-ID: <48ADC2FB.1010504@bank-banque-canada.ca>

Are the messages below to be expected from make check-all ?

using the rc today, Aug 21, on
Red Hat Enterprise Linux AS release 4 (Nahant Update 4)
Kernel 2.6.9-42.0.8.ELsmp on an x86_64

Paul
________
....
checking package 'utils'
....
* checking R code for possible problems ... NOTE
install.packages: no visible global function definition for
   ?.install.winbinary?
install.packages: no visible global function definition for
   ?.install.macbinary?

....
checking package 'stats'
....
* checking R code for possible problems ... NOTE
glm.fit: no visible binding for global variable ???n???
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking tests ...
make[3]: Entering directory 
`/home/mfa/gilp/toolchain/R/src/R-rc/tests/stats.Rcheck/tests'
   Running 'nafns.R'
   Running 'nls.R'
   Comparing 'nls.Rout' to 'nls.Rout.save' ...134c134
< Achieved convergence tolerance: 2.75e-06
---
 > Achieved convergence tolerance: 2.74e-06
145c145
<   3: 0.00060639084: 0.00517051 0.999153
---
 >   3: 0.00060639084: 0.00517052 0.999153
214c214
< Achieved convergence tolerance: 1.04e-07
---
 > Achieved convergence tolerance: 1.34e-07
249c249
< Achieved convergence tolerance: 1.73e-07
---
 > Achieved convergence tolerance: 1.29e-07
288c288
< Achieved convergence tolerance: 3.73e-08
---
 > Achieved convergence tolerance: 8.48e-09
382c382
< Achieved convergence tolerance: 2.80e-07
---
 > Achieved convergence tolerance: 2.81e-07
430c430
< Achieved convergence tolerance: 3.16e-06
---
 > Achieved convergence tolerance: 3.43e-06
487c487
< 11  3.40458   22.42470    1.38476
---
 > 11  3.40458   22.42471    1.38476
497,498c497,498
< 7  3.89865   23.13401    1.79455
< 8  4.52605  166.09148    2.20381
---
 > 7  3.89865   23.13399    1.79455
 > 8  4.52605  166.09149    2.20381
611c611
< Achieved convergence tolerance: 7.17e-07
---
 > Achieved convergence tolerance: 7.45e-07
647c647
< Achieved convergence tolerance: 2.08e-06
---
 > Achieved convergence tolerance: 1.98e-06
  OK

....
checking package 'methods'
....
* checking R code for possible problems ... NOTE
browseAll: no visible binding for global variable ?.BrowserStack?
..dataPartReplace2: no visible binding for global variable ?THISCLASS?
...First.lib: no visible binding for global variable ?.possibleExtends?
...First.lib: no visible binding for global variable ?.makeGeneric?
...First.lib: no visible binding for global variable
   ?.newClassRepresentation?
...First.lib: no visible binding for global variable
   ?..mergeClassDefSlots?
..makeBasicFuns: no visible global function definition for
   ?.addBasicGeneric?
..makeBasicFuns: no visible binding for global variable
   ?.addBasicGeneric?
..oldTestFun: no visible binding for global variable ?CLASS?
selectMethod: no visible binding for global variable ?.SelectMethodOn?
....
checking package 'grid'
....
* checking R code for possible problems ... NOTE
wrap.down: no visible binding for global variable ?path?
wrap.pop: no visible binding for global variable ?n?
wrap.up: no visible binding for global variable ?n?
wrap.viewport: no visible binding for global variable ?vp?
....
checking bundle 'VR'
....
** checking R code for possible problems ... NOTE
glmmPQL: no visible binding for global variable ?wts?
negative.binomial : variance: no visible binding for global variable
   ?.Theta?
negative.binomial : dev.resids: no visible binding for global variable
   ?.Theta?
negative.binomial : aic: no visible binding for global variable
   ?.Theta?
neg.bin : variance: no visible binding for global variable ?.Theta?
neg.bin : dev.resids: no visible binding for global variable ?.Theta?
neg.bin : aic: no visible binding for global variable ?.Theta?
** checking Rd files ... OK

====================================================================================

La version fran?aise suit le texte anglais.

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[Rd] rc note, etc
Paul Gilbert