From pd@lgd @ending from gm@il@com  Tue Aug 14 17:31:26 2018
From: pd@lgd @ending from gm@il@com (peter dalgaard)
Date: Tue, 14 Aug 2018 17:31:26 +0200
Subject: [Rd] R CMD check warnings on Windows
In-Reply-To: <DABBA49CC8C7AA4B959D2D0FEE496D7273137177@EXINFRCHMB1P.ccmc.local>
References: <DABBA49CC8C7AA4B959D2D0FEE496D7273137177@EXINFRCHMB1P.ccmc.local>
Message-ID: <47A3D63B-6B09-4C51-8F20-6364AD3DEA24@gmail.com>

I don't think this has anything to do with Fortran.

The full warning message is presumably like

Warning: S3 methods . . . were declared in NAMESPACE but not found

which according to google-fu happens if you are declaring methods from a package that isn't loaded, in this case possibly dplyr. 

On previous occasions, this has happened due to race conditions so that one package is not completely  updated before another is installed, and that could well be the case if you see trouble on just the one platform, so maybe wait and see if the warning goes away. Otherwise, check for missing dependencies.



> On 14 Aug 2018, at 17:00 , Wang, Zhu <Zwang at connecticutchildrens.org> wrote:
> 
> Hi all,
> 
> For the R package bujar, the warnings below were generated on CRAN's Windows systems. The package uses some Fortran subroutines. I would appreciate any advice to eliminate the warnings. By the way, similar warnings were generated to some unrelated R packages as well: https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/imputeTS-00check.html.
> 
> Thanks in advance.
> 
> Zhu Wang
> 
> https://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/bujar-00check.html
> 
> 
> * installing *source* package 'bujar' ...
> ** package 'bujar' successfully unpacked and MD5 sums checked
> ** R
> ** data
> ** inst
> ** byte-compile and prepare package for lazy loading
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 'collect.data.frame', 'common_by.NULL', 'common_by.character', 'common_by.default', 'common_by.list', 'compute.data.frame', 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> *** arch - i386
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 'collect.data.frame', 'common_by.NULL', 'common_by.character', 'common_by.default', 'common_by.list', 'compute.data.frame', 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> *** arch - x64
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df', 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame', 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df', 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df', 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df', 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array', 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table', 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube', 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame', 'collect.data.frame', 'common_by.NULL', 'common_by.character', 'common_by.default', 'common_by.list', 'compute.data.frame', 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame', 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame', 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df', 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> * MD5 sums
> packaged installation of 'bujar' as bujar_0.2-3.zip
> * DONE (bujar)
> In R CMD INSTALL
> 
> 
> **Connecticut Children's Confidentiality Notice**
> This e-mail message, including any attachments, is for...{{dropped:23}}



[Rd] R CMD check warnings on Windows
peter dalgaard