From mtmorgan at fhcrc.org  Thu Sep 20 05:21:15 2007
From: mtmorgan at fhcrc.org (Martin Morgan)
Date: Wed, 19 Sep 2007 20:21:15 -0700
Subject: [Rd] packages MANOR, qvalue,
 and tkWidgets fail install on Fedora 7 with latest R-beta build
In-Reply-To: <46F1D9FF.2040807@iupui.edu> (Mark W. Kimpel's message of "Wed,
	19 Sep 2007 22:25:03 -0400")
References: <46F1D9FF.2040807@iupui.edu>
Message-ID: <6ph3axaauok.fsf@gopher4.fhcrc.org>

Hi Mark --

sessionInfo and the warning messages are not enough here. Try to
install one of the failing packages and provide the complete
transcript of the process.

Consider sending this to the Bioconductor mailing lists (bioc-devel,
in particular, since these packages are in the development branch).

Martin

Mark W Kimpel <mkimpel at iupui.edu> writes:

> Had some packages fail install so I updated to today's R-beta release. 
> On updating packages the following packages still fail. sessionInfo 
> follows. Mark
>
> Warning messages:
> 1: In install.packages(update[instlib == l, "Package"], l, contriburl = 
> contriburl,  :
>    installation of package 'MANOR' had non-zero exit status
> 2: In install.packages(update[instlib == l, "Package"], l, contriburl = 
> contriburl,  :
>    installation of package 'qvalue' had non-zero exit status
> 3: In install.packages(update[instlib == l, "Package"], l, contriburl = 
> contriburl,  :
>    installation of package 'tkWidgets' had non-zero exit status
>  > sessionInfo()
> R version 2.6.0 beta (2007-09-18 r42895)
> i686-pc-linux-gnu
>
> locale:
> LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
>
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
> [1] limma_2.11.13          affy_1.15.9            preprocessCore_0.99.18
> [4] affyio_1.5.11          Biobase_1.15.33        graph_1.15.20
>
> loaded via a namespace (and not attached):
> [1] cluster_1.11.8  rcompgen_0.1-15
> -- 
>
> ---
>
> Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
> Indiana University School of Medicine
>
> 15032 Hunter Court, Westfield, IN  46074
>
> (317) 490-5129 Work, & Mobile & VoiceMail
> (317) 663-0513 Home (no voice mail please)
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

-- 
Martin Morgan
Bioconductor / Computational Biology
http://bioconductor.org



[Rd] packages MANOR, qvalue, and tkWidgets fail install on Fedora 7 with latest R-beta build
Martin Morgan