From simon.urbanek at r-project.org  Sat Nov 20 08:39:43 2010
From: simon.urbanek at r-project.org (Simon Urbanek)
Date: Sat, 20 Nov 2010 08:39:43 +0100
Subject: [Rd] JRI and error message from R_isMethodsDispatchOn
In-Reply-To: <4CE6C4B6.6030902@gmail.com>
References: <4CE6C4B6.6030902@gmail.com>
Message-ID: <00C80B8C-71DE-479B-B48F-E1C3C62818A9@r-project.org>

Keith,

On Nov 19, 2010, at 7:40 PM, Keith wrote:

> Dear R users,
> 
> I have a small project written in Java and need some statical tools. Therefore, I used JRI (in rJava package) as an interface between R and Java to write some wrappers for my work. However, I received error message from R while I have more than one java method which wraps R:
> 
> Error in .Call("R_isMethodsDispatchOn", onOff, PACKAGE = "base") :
>  Incorrect number of arguments (2), expecting 1 for R_isMethodsDispatchOn
> 
> The Java pseudo code would be like:
> 
> public class Test{
>  public static void main(String[] args){
>    ...
>    objA.do;
>    objB.do;
>    ...
>  }
> }
> 
> Each do method actually calls R to do the job. I already know R is single-treaded so I implemented end method in Rengine class to shutdown R in each method.

You cannot shutdown R short of closing the process and thus JVM, so that is not an option. In fact NOT using end will likely solve your problem - simply used one, shared instance of the REngine.


> I thought this won't cause multi-thread problems in this case because I terminate/destroy each R thread before I call another one. But, it seems that it's still considered as 2 threads. Did I miss something? or probably, I have to set-up JRI server for my project? or other recommendations for my purpose?
> 

Simply use one instance of REngine continuously - that's the only approach possible with JRI (note that the R access is synchronized so you can use the instance from different threads). If you need multiple instances, you can use Rserve - it uses the same REngine API but allows you to have arbitrarily many parallel instances.

BTW: please use stats-rosuda-devel mailing list of questions related to rJava, JRI or Rserve. It's also worth scanning the archives as those issues have been raised before.

Cheers,
Simon



> R version: 2.11.1
> rJava version: 0.8-4
> OS: Arch Linux
> 
> Best,
> Keith
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
> 
> 



[Rd] JRI and error message from R_isMethodsDispatchOn
Simon Urbanek