From maechler at stat.math.ethz.ch  Fri Dec  5 21:12:33 2008
From: maechler at stat.math.ethz.ch (Martin Maechler)
Date: Fri, 05 Dec 2008 21:12:33 +0100
Subject: [Rd] Recent snapshot tarballs of R-devel don't compile
In-Reply-To: <49397107.2060004@fhcrc.org>
References: <20081203233438.v7h3y4q0go08k4os@webmail.fhcrc.org>
	<alpine.LFD.2.00.0812040820060.15746@gannet.stats.ox.ac.uk>
	<18744.56329.489440.432766@stat.math.ethz.ch>
	<49397107.2060004@fhcrc.org>
Message-ID: <18745.35633.513221.510620@cmath-7.math.ethz.ch>

>>>>> "HP" == Herv? Pag?s <hpages at fhcrc.org>
>>>>>     on Fri, 05 Dec 2008 10:20:55 -0800 writes:

    HP> Hi Martin, Martin Maechler wrote: [...]
    BDR> Maybe, in which case running tools/link-recommended
    BDR> will fix it.  Works for me with the snapshot mentioned
    BDR> above.
    >> 
    >> Yes.
    >> 
    >> But also we know that we don't want to require that from
    >> people working with the tarball.

    HP> Yes, and that's one of the reasons we use these tarballs
    HP> for the Bioconductor build system. They are a little bit
    HP> more convenient than pulling the source from svn.

yes.
I've finally found the cause.
Indeed it's been a change to R-devel, on Novemeber 17 I think,
 a "pdf -cleanup"
which breaks  'make vignettes'  which breaks 'distdir' ...
..

Huhh, finally! ....   so I assume we will have a fix in place
relatively soon.


Thank you, Herve, for you perseverance ;-)
Martin


    >> 
    >> The question remains why the automated build procedures
    >> ... that I have setup and have been running for years,
    >> suddenly fail to put the *.tgz symbolic links into
    >> src/library/Recommended/ as they used to.

    HP> I don't know what OS this procedure is running on but
    HP> maybe 'tar' started to do some strange strings with
    HP> symlinks after an OS update/upgrade...

    HP> Thanks, H.

    HP> -- Herv? Pag?s

    HP> Program in Computational Biology Division of Public
    HP> Health Sciences Fred Hutchinson Cancer Research Center
    HP> 1100 Fairview Ave. N, M2-B876 P.O. Box 19024 Seattle, WA
    HP> 98109-1024

    HP> E-mail: hpages at fhcrc.org Phone: (206) 667-5791 Fax:
    HP> (206) 667-1319



[Rd] Recent snapshot tarballs of R-devel don't compile
Martin Maechler