From cbeleites at units.it  Tue Feb 15 15:44:21 2011
From: cbeleites at units.it (Claudia Beleites)
Date: Tue, 15 Feb 2011 15:44:21 +0100
Subject: [Rd] vignette question was: CRAN package sizes
In-Reply-To: <alpine.LFD.2.02.1102141112140.5766@gannet.stats.ox.ac.uk>
References: <alpine.OSX.1.00.1102131203050.44163@tystie.local>	<AANLkTin5vM8C+7w-PDzVWdRA67WNbXxH3MqMjbxd1HSs@mail.gmail.com>
	<alpine.LFD.2.02.1102141112140.5766@gannet.stats.ox.ac.uk>
Message-ID: <4D5A9145.9050301@units.it>

Also I started doing my homework with regards to package size, and that is 
mainly cleaning leftovers from vignette generation and compressing the pdfs.

For most of my vignettes, ghostscript (lossy) compression works very well:
I use the /screen settings and -dDownsampleColorImages=false
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE 
-dQUIET -dBATCH -dDownsampleColorImages=false -dAutoRotatePages=/None
(DownsampleColorImages=false is important as I found otherwise that some .png 
become completely useless. However, the pngs are saved with carefully determined 
size and are pngs because the pdfs were too large: so I know that the bitmap 
images are already "size-optimized")
I wrote a inst/doc/makefile to do this and also clean up a few more "leftovers 
from the vignette".

BTW: while compressing the final .pdf achieves better total compression, it 
already helps a lot to compress the .pdf figures which can be done at the end of 
the .Rnw.

qpdf didn't help for my vignettes.


One question remains, though. I have two vignettes, where I cannot put the 
original data into the package (the very first thing in the vignette is the link 
to a zip file on r-forge that contains everything needed to reproduce the 
vignette, though. I think this is accessible enough for FOSS).
I'd like to have these documents accessible via the usual vignette () mechanism 
(this question has come up before, but I found only that the 00Index.dcf does 
not work any longer).
My second thought was to set up the Makefile so that instead of building the pdf 
a message is printed and the available pdf is used.
This does not work, however: buildVignettes (which I guess does the work*) first 
Sweaves the .Rnw file and then replaces the texi2dvi () call by make.
Is this intended behaviour? If so, how do I make my vignette accessible 
[obviously the "dummy .Rnw that includes the pdf"-technique doesn't look quite 
appropriate as it leads to unnecessarily large package size]?

*I did not realise this from the Makefile discussion in the extensions manual 
(nor does the help page of buildVignettes mention anything about this). Also, 
I'd appreciate very much if the extension manual would mention buildVignettes - 
it took me quite a while to find out what code is used and why my Makefile 
didn't lead to the desired results.

Thanks a lot for any ideas,

Claudia

-- 
Claudia Beleites
Dipartimento dei Materiali e delle Risorse Naturali
Universit? degli Studi di Trieste
Via Alfonso Valerio 6/a
I-34127 Trieste

phone: +39 0 40 5 58-37 68
email: cbeleites at units.it



[Rd] vignette question was: CRAN package sizes
Claudia Beleites