From hpages at fhcrc.org  Thu Sep 16 06:54:54 2010
From: hpages at fhcrc.org (=?ISO-8859-1?Q?Herv=E9_Pag=E8s?=)
Date: Wed, 15 Sep 2010 21:54:54 -0700
Subject: [Rd] Lack of consistent cross-platform behaviour of
	tools:::buildVignettes()
Message-ID: <4C91A31E.4020500@fhcrc.org>

Hi,

On both Unix and Windows there is a mechanism to add variables
to the environment when R is started. I noticed that, on Unix,
this mechanism is not used when R is started normally at the
command line but only when it's started using the 'R CMD' syntax.
One problem with this is some lack of consistent cross-platform
behaviour. For example:

On Linux:

   $ echo $TEXINPUTS

   $ echo "Sys.getenv('TEXINPUTS')" | R --slave
   TEXINPUTS
          ""
But on Windows:

   E:\tmp>echo %TEXINPUTS%
   %TEXINPUTS%
   E:\tmp>echo Sys.getenv("TEXINPUTS") | R\bin\R.exe --slave
                                               TEXINPUTS
   ".;;E:/biocbld/bbs-2.7-bioc/R/share/texmf/tex/latex;"

So on Linux if I cd to the inst/doc folder of a package source tree
that has a Makefile and run

   echo "tools:::buildVignettes('pkgname', '.')" | R --slave

it fails with error:

   ! LaTeX Error: File `Sweave.sty' not found.

while doing the same thing on Windows works.

Is there any reason for not setting the environments variables
that are defined in ${R_HOME}/bin/Rcmd (the shell script wrapper
for all R CMD commands) when R is started normally?

Thanks,
H.

BTW, I found this (on both, Unix and Windows):

   $ echo "Sys.getenv('TEXINPUTS')" | R
   Fatal error: you must specify '--save', '--no-save' or '--vanilla'

What about --slave? Thanks!


-- 
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fhcrc.org
Phone:  (206) 667-5791
Fax:    (206) 667-1319



[Rd] Lack of consistent cross-platform behaviour of tools:::buildVignettes()
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