From hpages at fhcrc.org  Thu May  1 00:34:24 2014
From: hpages at fhcrc.org (=?windows-1252?Q?Herv=E9_Pag=E8s?=)
Date: Wed, 30 Apr 2014 15:34:24 -0700
Subject: [Rd] "Name partially matched in data frame"
In-Reply-To: <53614FC0.30408@gmail.com>
References: <3781BDEC-E7D2-482A-A7A7-63B61B021754@plessthan.com>
	<53614FC0.30408@gmail.com>
Message-ID: <53617A70.80308@fhcrc.org>

Hi,

Would be good to have the man page updated about this. It still
says:

  'x$name' is equivalent to 'x[["name", exact=FALSE]]'

which doesn't seem to be completely true anymore (the former emits
a warning in case of partial matching, not the latter).

It looks like for a data.frame, ?x$name? is now equivalent to
'x[["name", exact=NA]]':

   > data.frame(aa=1:3)$a
   [1] 1 2 3
   Warning message:
   In `$.data.frame`(data.frame(aa = 1:3), a) :
     Name partially matched in data frame

   > data.frame(aa=1:3)[["a", exact=NA]]
   [1] 1 2 3
   Warning message:
   In .subset2(x, i, exact = exact) : partial match of 'a' to 'aa'

except that, instead of just calling 'x[["name", exact=NA]]' internally,
the former comes up with its own (and less informative) error message.

Cheers,
H.

 > sessionInfo()
R version 3.1.0 (2014-04-10)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
  [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base


On 04/30/2014 12:32 PM, Duncan Murdoch wrote:
> On 30/04/2014 3:03 PM, Fisher Dennis wrote:
>> R 3.1.0
>> OS X
>>
>> Colleagues,
>>
>> I recently updated to 3.1.0 and I have encountered
>>     Warning messages: ...  Name partially matched in data frame
>> when I do something like:
>>     DATAFRAME$colname
>> where colname is actually something longer than that (but unambiguous).
>>
>> I have much appreciated the partial matching capabilities because it
>> fits with my workflow.  I often receive updated data months after the
>> initial code is written.  In order to keep track of what I did in the
>> past, I provide lengthy (unambiguous) names for columns, then
>> abbreviate the names as I call them.  This behavior has been termed
>> ?lazy? in various correspondence on this mailing list but it works for
>> me and probably works for others.
>>
>> I realize that the new message is only a warning but it is a minor
>> nuisance.  Would it be possible to add an
>>     option(partialMatch=TRUE)    ## default is FALSE
>> or something similar to suppress that behavior?  That should keep both
>> camps happy.
>
> I'd be much happier with a general mechanism to suppress particular
> warnings.  Then you could choose to suppress this one.
>
> We might be able to do that with options("warning.expression"), but I
> don't see how...
>
> Duncan Murdohc
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel

-- 
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpages at fhcrc.org
Phone:  (206) 667-5791
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[Rd] "Name partially matched in data frame"
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