From simon.urbanek at r-project.org  Thu May 19 16:03:13 2011
From: simon.urbanek at r-project.org (Simon Urbanek)
Date: Thu, 19 May 2011 10:03:13 -0400
Subject: [Rd] r-2.13 fails make check
In-Reply-To: <BANLkTim4MzWyv8fHo0K8DL4yechHRBHY9g@mail.gmail.com>
References: <BANLkTim4MzWyv8fHo0K8DL4yechHRBHY9g@mail.gmail.com>
Message-ID: <E4E57C33-7E16-444C-A8D5-085F68AC2C06@r-project.org>

Yes, this must be from some commit yesterday, because the build from previous night worked. I see the same error in the nightly builds:

http://r.research.att.com/log-R-2.13-branch.leopard.i386.html


On May 19, 2011, at 8:47 AM, Kasper Daniel Hansen wrote:

> I am only reporting this because it is the current release branch and
> not devel.
> 
> R-2.13 from svn revision 55957 builds fine, but fails make check.
> This happened with a fresh svn checkout 12 hours ago and it still
> happens as of now.  Two days ago I could build R-2.13 and it passed
> make check on the same system, so I doubt it is a system problem.  But
> just in case my system details are a fresh install of OS X Snow
> Leopard (new machine) with Xcode 4 and Simon's gfortran and a number
> of his other libraries (readline, cairo, libpng, jpeg, pixman and some
> others).
> 
> Output from make check:
> 
> running code in '../../R-2.13-src/tests/reg-examples1.R' ... OK
> running code in '../../R-2.13-src/tests/reg-examples2.R' ... OK
> running code in '../../R-2.13-src/tests/reg-packages.R' ...make[3]:
> *** [reg-packages.Rout] Error 1
> make[2]: *** [test-Reg] Error 2
> make[1]: *** [test-all-basics] Error 1
> make: *** [check] Error 2
> 
> locating tests/reg-packages.Rout.fail I find
> 
>> stopifnot(require("myTst",lib = "myLib"))
> Loading required package: myTst
>> sm <- findMethods(show, where= as.environment("package:myTst"))
>> stopifnot(names(sm at names) == "foo")
>> unlink("myTst_*")
>> 
>> ## More building & installing packages
>> ## NB: tests were added here for 2.11.0.
>> ## NB^2: do not do this in the R sources!
>> ## and this testdir is not installed.
>> pkgSrcPath <- file.path(Sys.getenv("SRCDIR"), "Pkgs")
>> if(file_test("-d", pkgSrcPath)) {
> +     ## could use file.copy(recursive = TRUE)
> +     system(paste('cp -r', shQuote(pkgSrcPath), shQuote(tempdir())))
> +     pkgPath <- file.path(tempdir(), "Pkgs")
> +     op <- options(warn=2)    # There should be *NO* warnings here!
> +     ## pkgB tests an empty R directory
> +     dir.create(file.path(pkgPath, "pkgB", "R"), recursive = TRUE,
> +                showWarnings = FALSE)
> +     p.lis <- c("pkgA", "pkgB", "exS4noNS", "exNSS4")
> +     for(p. in p.lis) {
> +         cat("building package", p., "...\n")
> +         r <- build.pkg(file.path(pkgPath, p.))
> +         cat("installing package", p., "using file", r, "...\n")
> +         ## we could install the tar file ... (see build.pkg()'s definition)
> +         install.packages(r, lib = "myLib", repos=NULL, type = "source")
> +         stopifnot(require(p.,lib = "myLib", character.only=TRUE))
> +         detach(pos = match(p., sub("^package:","", search())))
> +     }
> +     ## TODO: not just print, but check the "list":
> +     print(installed.packages(lib.loc = "myLib", priority = "NA"))
> +     options(op)
> +     unlink("myLib", recursive = TRUE)
> +     unlink(file.path(pkgPath), recursive = TRUE)
> + }
> building package pkgA ...
> Error in parse_description_field(desc, "BuildKeepEmpty", keep_empty1) :
>  object 'keep_empty1' not found
> Execution halted
> Error: (converted from warning) running command
> '/Users/khansen/Source/R-2.13-build/bin/R CMD build --keep-empty-dirs
> /var/folders/E3/E3ZBCIQ9El4LlIR92ARpyE+++TI/-Tmp-//Rtmpw9faGg/Pkgs/pkgA'
> had status 1
> Execution halted
> 
> Kasper
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
> 
> 



[Rd] r-2.13 fails make check
Simon Urbanek