From juan_sr at uol.com.br  Sun Oct 29 16:58:02 2006
From: juan_sr at uol.com.br (Juan Santiago Ramseyer)
Date: Sun, 29 Oct 2006 12:58:02 -0300
Subject: [Rd] install packages RMySQL fail
Message-ID: <1162137482.7303.8.camel@localhost.localdomain>

install packages RMySQL fail.

System Fedora Core 6 x86_64

see down. It's bug or incomplete install MySQL?

Juan.

______________________________________________________________
PROMPT MySQL

$ mysql
Welcome to the MySQL monitor.  Commands end with ; or \g.
Your MySQL connection id is 2 to server version: 5.0.22

Type 'help;' or '\h' for help. Type '\c' to clear the buffer.

mysql>
______________________________________________________________

PROMPT R INSTALLING RMySQL

> install.packages()
tentando a URL
'http://www.insecta.ufv.br/CRAN/src/contrib/RMySQL_0.5-10.tar.gz'
Content type 'application/x-tar' length 142671 bytes
URL aberta
==================================================
downloaded 139Kb

* Installing *source* package 'RMySQL' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for compress in -lz... yes
checking for getopt_long in -lc... yes
checking for mysql_init in -lmysqlclient... no
checking for mysql.h... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for mysql_init in -lmysqlclient... no
checking for /usr/local/include/mysql/mysql.h... no
checking for /usr/include/mysql/mysql.h... yes

Configuration error:
  could not find the MySQL installation include and/or library
  directories.  Manually specify the location of the MySQL
  libraries and the header files and re-run R CMD INSTALL.

INSTRUCTIONS:

1. Define and export the 2 shell variables PKG_CPPFLAGS and
   PKG_LIBS to include the directory for header files (*.h)
   and libraries, for example (using Bourne shell syntax):

      export PKG_CPPFLAGS="-I<MySQL-include-dir>"
      export PKG_LIBS="-L<MySQL-lib-dir> -lmysqlclient"

   Re-run the R INSTALL command:

      R CMD INSTALL RMySQL_<version>.tar.gz

2. Alternatively, you may pass the configure arguments
      --with-mysql-dir=<base-dir> (distribution directory)
   or
      --with-mysql-inc=<base-inc> (where MySQL header files reside)
      --with-mysql-lib=<base-lib> (where MySQL libraries reside)
   in the call to R INSTALL --configure-args='...'

   R CMD INSTALL --configure-args='--with-mysql-dir=DIR'
RMySQL_<version>.tar.gz

ERROR: configuration failed for package 'RMySQL'
** Removing '/usr/lib64/R/library/RMySQL'

The downloaded packages are in
        /tmp/Rtmpioa2vr/downloaded_packages
Warning message:
installation of package 'RMySQL' had non-zero exit status in:
install.packages()




[Rd] install packages RMySQL fail
Juan Santiago Ramseyer