From spencer.graves at pdf.com  Sun Nov  2 16:29:50 2008
From: spencer.graves at pdf.com (Spencer Graves)
Date: Sun, 02 Nov 2008 07:29:50 -0800
Subject: [Rd] cat: ./R/Copy: No such file or directory
In-Reply-To: <alpine.LFD.2.00.0811020704100.9148@gannet.stats.ox.ac.uk>
References: <XFMail.081101161959.Ted.Harding@manchester.ac.uk>
	<490CFA17.8000605@pdf.com> <490D03EF.6090805@stats.uwo.ca>
	<490D0E32.5010703@pdf.com>
	<alpine.LFD.2.00.0811020704100.9148@gannet.stats.ox.ac.uk>
Message-ID: <490DC76E.6010300@pdf.com>

Dear Prof. Ripley: 

      Thanks for the suggestion.  I've used some of those diagnostics, 
and I think I knew that I could run "R CMD install --build" without 
having passed "R CMD check", but I hadn't done it before and didn't 
think of it.  I will remember it for the future. 

      Best Wishes,
      Spencer

Prof Brian Ripley wrote:
> Please note that the assmuption is that you can install a pacakge 
> before you check it.
>
> R CMD INSTALL often gives fuller diagnostics: I am not sure these 
> would have helped you here, but I would have expected you to have got 
> a 'syntax error' message (which is not 'cryptic': you did have syntax 
> errors in your files).
>
> On Sat, 1 Nov 2008, Spencer Graves wrote:
>
>> Dear Duncan: <in line>
>>
>> Duncan Murdoch wrote:
>>> On 01/11/2008 8:53 PM, Spencer Graves wrote:
>>>> Dear Ted:
>>>>       Thanks very much.  In fact, I did have a file named "Copy of 
>>>> create.fourier.basis.R".  I deleted it and got an even more cryptic 
>>>> version of the same error message.  I ultimately traced this to 
>>>> lines like "<<<<<<< .working" inserted by subversion into a *.R or 
>>>> *.Rd file I was using.  I found this by finding a previous 
>>>> "*.tar.gz" file that passed "R CMD check", studying the subversion 
>>>> log of 7 different changes made by 3 people since that one that 
>>>> worked, and reviewing changes made to at least 13 different files 
>>>> in that period until I found the problem. 
>>>
>>> Hi Spencer.
>>>
>>> If you're using Windows, I really recommend using TortoiseSVN.  
>>> It'll make it very easy to see conflict markers like the one that 
>>> caused your trouble. (I don't like their compare utility, but it's 
>>> easy to plug in a different one. I use Beyond Compare.)
>>     I've been using TortoiseSVN for roughly 18 months now, but I had 
>> previously not used much of its capabilities.  The log and diff files 
>> helped narrow the problem from someplace in 400 files to someplace in 
>> 13.
>>     It would be nice if the "R CMD check" diagnostics were more clear 
>> about things like this.  However, even with these problems, it is 
>> vastly superior to the anarchy that organizes the software 
>> development efforts of many people I know.  I have friends and 
>> colleagues developing software in other languages with NOTHING like 
>> this, asking me to check their work.  I'm refining lectures on the 
>> virtues of "R CMD check" and pushing others adopt something similar 
>> for perl scripts, Matlab code, etc.  I'm eager to help develop such 
>> systems, and I resist efforts to have me repeat tests I developed 
>> months ago and should be automated.
>>     Thanks for your reply -- and for your very valuable work in 
>> helping to develop the current "R CMD check" system.
>>     Best Wishes,
>>     Spencer
>>>
>>> If you're not on Windows, there are probably similar things 
>>> available, but I don't know what they are.
>>>
>>> Duncan Murdoch
>>>
>>>>
>>>>       Best Wishes,
>>>>       Spencer
>>>>
>>>> (Ted Harding) wrote:
>>>>> Just guessing here, but it looks as though an attempt has been made
>>>>> to execute the following command:
>>>>>
>>>>>   cat ./R/Copy of create.fourier.basis.R
>>>>>
>>>>> This may have arisen because there is indeed a file named
>>>>>
>>>>>   "Copy of create.fourier.basis.R"
>>>>>
>>>>> but the command was issued to the OS without quotes; or (perhaps
>>>>> less likely, because of the presence of the "./R/") the line
>>>>>
>>>>>   "Copy of create.fourier.basis.R"
>>>>>
>>>>> was intended as a comment in the file, but somehow got read as
>>>>> a substantive part of the code.
>>>>>
>>>>> Good luck!
>>>>> Ted.
>>>>>
>>>>> On 01-Nov-08 15:40:33, Spencer Graves wrote:
>>>>>
>>>>>> Hello:
>>>>>>       What do you recommend I do to get past cryptic error messages
>>>>>> from "R CMD check", complaining "No such file or directory"?  The 
>>>>>> package is
>>>>>> under SVN control, and I reverted to a version that passed "R CMD 
>>>>>> check", without eliminating the error.  The "00install.out" file 
>>>>>> is short and bitter:
>>>>>>
>>>>>> cat: ./R/Copy: No such file or directory
>>>>>> cat: of: No such file or directory
>>>>>> cat: create.fourier.basis.R: No such file or directory
>>>>>> make: *** [Rcode0] Error 1
>>>>>>
>>>>>> ---------- Making package fda ------------
>>>>>>   adding build stamp to DESCRIPTION
>>>>>>   installing NAMESPACE file and metadata
>>>>>> make[2]: *** No rule to make target `R/Copy', needed by 
>>>>>> `D:/spencerg/statmtds/splines/fda/RForge/fda/fda.Rcheck/fda/R/fda'. 
>>>>>> Stop.
>>>>>> make[1]: *** [all] Error 2
>>>>>> make: *** [pkg-fda] Error 2
>>>>>> *** Installation of fda failed ***
>>>>>>
>>>>>> Removing 
>>>>>> 'D:/spencerg/statmtds/splines/fda/RForge/fda/fda.Rcheck/fda'
>>>>>>
>>>>>>            Thanks for any suggestions.  I have a "*.tar.gz" file 
>>>>>> that I hope
>>>>>> may not have this problem, but I'm not sure.
>>>>>>       Thanks,
>>>>>>       Spencer
>>>>>>
>>>>>> ______________________________________________
>>>>>> R-devel at r-project.org mailing list
>>>>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>>>>>
>>>>> --------------------------------------------------------------------
>>>>> E-Mail: (Ted Harding) <Ted.Harding at manchester.ac.uk>
>>>>> Fax-to-email: +44 (0)870 094 0861
>>>>> Date: 01-Nov-08                                       Time: 16:19:56
>>>>> ------------------------------ XFMail ------------------------------
>>>>>
>>>>
>>>> ______________________________________________
>>>> R-devel at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>>
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>



[Rd] cat: ./R/Copy: No such file or directory
Spencer Graves