From tsantossilva at algomau.ca  Thu Sep  4 17:15:18 2014
From: tsantossilva at algomau.ca (Thalles)
Date: Thu, 4 Sep 2014 08:15:18 -0700 (PDT)
Subject: [Rd] R CMD check --as-cran does not show all error messages.
Message-ID: <1409843718542-4696489.post@n4.nabble.com>

Hello, That is my first post here and I'd like to thanks everybody in
advance.

I am writing a package with some R functions and try to submit it to CRAN.
After build and check the package a number of times, I am struggling with
the fact that the CRAN people responsible for checking  packages are
replying me with some mistakes that I just do NOT get when I do the check in
my computer. With the most recent R version, i.e. 3.1.1 and the command R
CMD check --as-cran on my package I get:

* using log directory ?/home/thalles/Music/opentraj.Rcheck?
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ?opentraj/DESCRIPTION? ... OK
* checking extension type ... Package
* this is package ?opentraj? version ?1.0?
* checking CRAN incoming feasibility ... NOTE
Maintainer: ?Thalles Silva <tsantossilva at algomau.ca>?
New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ?opentraj? can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ...
OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ?data? directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
Df2SpLinesDf     67.203  0.254  67.564
Df2SpLines       36.962  0.200  37.220
PlotTraj          6.802  0.048   6.860
hytraj07.lines    5.641  0.049   5.699
hytraj07.linesDf  5.229  0.059   5.295
* checking PDF version of manual ... OK
NOTE: There was 1 note.

However, the people from CRAN claim that there is a error:

* checking R code for possible problems ... NOTE
PlotBgMap: no visible binding for global variable ?canada.map?

This function 'PlotBgMap' loads this data set ?canada.map?, that is part of
the package. And the *LazyData: yes* is set in the DESCRIPTION file. I know
that the cause of this error is because somehow, the package is not being
loaded in the NAMESPACE, but it should be there because I am using LazyData.
That is the code for the PlotBgMap function:

PlotBgMap <-function( traj, ... ) {
    hySplitProj <- CRS(proj4string(traj))
    canada <- spTransform(canada.map, hySplitProj)
    plot(canada.map, border="white", col="lightgrey", ... )
}

I'd like to know if I am missing something in the Checking process, or if I
should do anything else to fix this error. Thanks.



--
View this message in context: http://r.789695.n4.nabble.com/R-CMD-check-as-cran-does-not-show-all-error-messages-tp4696489.html
Sent from the R devel mailing list archive at Nabble.com.



[Rd] R CMD check --as-cran does not show all error messages.
Thalles