From shivali at ncmrwf.gov.in  Tue Oct  7 11:34:53 2014
From: shivali at ncmrwf.gov.in (shivali at ncmrwf.gov.in)
Date: Tue, 7 Oct 2014 15:04:53 +0530
Subject: [Rd] Issue installing Matrix Package
Message-ID: <771dd37aff6b886900d46627bcb5cf88.squirrel@mail.ncmrwf.gov.in>

Hi,

I installed R-3.1.1 on AIX-5.3 and my installation hanged up while
installing Matrix Package.
so i killed the gmake ; gmake install the software nad tired installing
Matrix package manually -

[ncmr0202][/gpfs1/home/shivali/gang/R-3.1.1/bin/package]>
/gpfs1/home/shivali/gang/R-3.1.1/bin/R CMD INSTALL Matrix

the package compiled successfully but while loading Matrix package the
installation hanged up -
in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no
definition for class "graphNEL"
in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no
definition for class "graphNEL"
Creating a generic function for 'format' from package 'base' in package
'Matrix'
Creating a generic function for 'qr.R' from package 'base' in package
'Matrix'
Creating a generic function for 'qr.Q' from package 'base' in package
'Matrix'
Creating a generic function for 'qr.qy' from package 'base' in package
'Matrix'
Creating a generic function for 'qr.qty' from package 'base' in package
'Matrix'
Creating a generic function for 'qr.coef' from package 'base' in package
'Matrix'
Creating a generic function for 'qr.resid' from package 'base' in package
'Matrix'
Creating a generic function for 'qr.fitted' from package 'base' in package
'Matrix'
** help
*** installing help indices
** building package indices
Loading required package: Matrix


On checking more i come accross the CPU utilization for thread using ps
-ef command (CPU priority penalty ) is inreasing upto 120 max limit.


[ncmr0202][/gpfs1/home/shivali/gang/R-3.1.1]> ps -ef | grep R-3.1.1
 shivali 323978 459010   0 14:36:14 pts/14  0:00 grep R-3.1.1
    root 492034 336504   0 14:34:36 pts/11  0:00 sh
/gpfs1/home/shivali/gang/R-3.1.1/lib/R/bin/Rcmd INSTALL Matrix
    root 525188 492034 120 14:34:37 pts/11  0:30
/gpfs1/home/shivali/gang/R-3.1.1/lib/R/bin/exec/R --args --args --args
nextArgMatrix
[ncmr0202][/gpfs1/home/shivali/gang/R-3.1.1]>


Please help

Regards,
Shivali Gangwar



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[Rd] Issue installing Matrix Package
shivali at ncmrwf.gov.in