From J.Gorecki at wit.edu.pl  Fri Nov  4 12:20:37 2016
From: J.Gorecki at wit.edu.pl (Jan Gorecki)
Date: Fri, 4 Nov 2016 11:20:37 +0000
Subject: [Rd] Running package tests and not stop on first fail
In-Reply-To: <4527a200-d3a1-bbed-6687-697aabef5b89@fredhutch.org>
References: <CABE2sp66ywzHW9LFOJ-Z0mRWWro62ZFGXppiFxPVqJC0gpssdQ@mail.gmail.com>
	<22555.5435.945673.692470@stat.math.ethz.ch>
	<4527a200-d3a1-bbed-6687-697aabef5b89@fredhutch.org>
Message-ID: <CABE2sp5Da4vc8Qksk8nD_bn-pv2+MJcrYaB-2J44HGo5eow3pg@mail.gmail.com>

Martin,
I submitted very simple patch on
https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17176

Herve,
While I like your idea, I prefer to keep my patch simple, it is now
exactly what Martin mentions. I think it is a good start that can
eventually be extended later for what you are asking.

Regards,
Jan

On 3 November 2016 at 17:25, Herv? Pag?s <hpages at fredhutch.org> wrote:
>
> Hi Martin, Jan,
>
> On 11/03/2016 03:45 AM, Martin Maechler wrote:
>>>>>>>
>>>>>>> Jan Gorecki <J.Gorecki at wit.edu.pl>
>>>>>>>     on Tue, 1 Nov 2016 22:51:28 +0000 writes:
>>
>>
>>     > Hello community/devs, Is there an option to run package
>>     > tests during R CMD check and not stop on first error? I
>>     > know that testing frameworks (testhat and others) can do
>>     > that but asking about just R and base packages. Currently
>>     > when package check runs test scripts in ./tests directory
>>     > it will stop after first fail.  Do you think it could be
>>     > optionally available to continue to run tests after
>>     > failures?  Regards, Jan Gorecki
>>
>> I agree that this would be a useful option sometimes.
>>
>> So I would be supportive to get such an option, say,
>>
>>    R CMD check --no-stop-on-error  <pkg>
>
>
> A couple of years ago the behavior of 'R CMD check' was changed to
> continue checking (e.g. the examples) after many types of errors, and
> to output a summary count of errors at the end if any have occurred.
> So --no-stop-on-error could easily be interpreted as an option that
> controls this behavior (and would also suggest that the default has
> been reverted back to what it was prior to R 3.2.0), rather than an
> option that specifically controls what should happen while running
> the tests.
>
> Cheers,
> H.
>
>>
>> into R if someone provided (relatively small) patches to the R
>> sources (i.e. subversion repos at https://svn.r-project.org/R/trunk/ ).
>> The relevant source code should basically all be in
>>     src/library/tools/R/testing.R
>>
>> Note that this may be complicated, also because "parallel"
>> checking is available in parts, via the TEST_MC_CORES
>> environment variable ((which is currently only quickly
>> documented in the 'R Administration ..' manual))
>>
>>
>> Martin Maechler
>> ETH Zurich
>>
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>>
>
> --
> Herv? Pag?s
>
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M1-B514
> P.O. Box 19024
> Seattle, WA 98109-1024
>
> E-mail: hpages at fredhutch.org
> Phone:  (206) 667-5791
> Fax:    (206) 667-1319



[Rd] Running package tests and not stop on first fail
Jan Gorecki