From jwiley.psych at gmail.com  Sun Oct 16 17:54:41 2011
From: jwiley.psych at gmail.com (Joshua Wiley)
Date: Sun, 16 Oct 2011 08:54:41 -0700
Subject: [Rd] Error in gzfile(file,
 mode) when checking a package with rcmd check
In-Reply-To: <4E9AA386.7010008@univ-fcomte.fr>
References: <4E9A8CDF.70801@univ-fcomte.fr> <4E9A9D8E.1090304@univ-fcomte.fr>
	<4E9AA386.7010008@univ-fcomte.fr>
Message-ID: <CANz9Z_Le2kOxm6GkGmeMnWjtB0DexLq6jSvQOJdCvNwHsSkzZQ@mail.gmail.com>

Hmm, I have not had any difficulty with 2.13.2 on
x86_64-pc-mingw32/x64, but I do have trouble with R CMD check on R
devel, as has another user now.  It is never with building or
installing, just the checking.  In my case, the error comes when
building the manual.

2011/10/16 Patrick Giraudoux <patrick.giraudoux at univ-fcomte.fr>:
> Also have just tried to build the package with no preliminary check. The
> package apparently builds OK, tar.gz as well as binary .zip. Really looks
> like the error has to do with the rcmd check command specifically... May it
> be a bug ? Suppose I am not the only one to have checked a package since R
> 2.13.2 has been delivered ?
>
> Patrick
>
>
> Le 16/10/2011 11:02, Patrick Giraudoux a ?crit :
>>
>> PS: looks like if it has something to do with moving from R 2.13.1 to R
>> 2.13.2, since I cannot even check earlier versions of the pgirmess package
>> that where well checked and compiled under earlier R versions.
>>
>>
>> Le 16/10/2011 09:50, Patrick Giraudoux a ?crit :
>>>
>>> Hi,
>>>
>>> For the first time I have a strange behaviour when checking a package
>>> before 'packaging' the code. Looks like a file cannot be read.
>>>
>>> rcmd check pgirmess
>>>
>>> * using log directory 'U:/Documents and Settings/pgiraudo/Mes
>>> documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck'
>>> * using R version 2.13.2 (2011-09-30)
>>> * using platform: i386-pc-mingw32 (32-bit)
>>> * using session charset: ISO8859-1
>>> * checking for file 'pgirmess/DESCRIPTION' ... OK
>>> * this is package 'pgirmess' version '1.5.2'
>>> * checking package dependencies ... OK
>>> * checking if this is a source package ... OK
>>> * checking for .dll and .exe files ... OK
>>> * checking whether package 'pgirmess' can be installed ... ERROR
>>> Installation failed.
>>> See 'U:/Documents and Settings/pgiraudo/Mes
>>> documents/R/pgir_arch/pgirmess_arch/On work/pgirmess.Rcheck/00install.out'
>>> for details.
>>>
>>>
>>> In '00install.out', ?I get:
>>>
>>> * installing *source* package 'pgirmess' ...
>>> ** R
>>> ** data
>>> ** preparing package for lazy loading
>>> ** help
>>> *** installing help indices
>>> ** building package indices ...
>>> ** testing if installed package can be loaded Error in gzfile(file, mode)
>>> : cannot open the connection
>>> Calls: %in% -> match -> installed.packages -> saveRDS -> gzfile
>>> In addition: Warning message:
>>> In gzfile(file, mode) :
>>> ?cannot open compressed file
>>> 'U:\DOCUME~1\Admin\LOCALS~1\Temp\RtmpwWcmem/libloc_U%3a%2fDocuments%20and%20Settings%2fpgiraudo%2fMes%20documents%2fR%2fpgir_arch%2fpgirmess_arch%2fOn%20work%2fpgirmess.RcheckVersion,Priority,Depends,Imports,LinkingTo,Suggests,Enhances,OS_type,License,Archs,Built.rds',
>>> probable reason 'No such file or directory'
>>> Execution halted
>>> ERROR: loading failed
>>> * removing
>>> 'U:/DOCUME~1/pgiraudo/MESDOC~1/R/PGIR_A~1/PGIRME~1/ONWORK~1/PGIRME~1.RCH/pgirmess'
>>>
>>> Any hint welcome ! I am stuck on that.
>>>
>>> Patrick
>>
>
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>



-- 
Joshua Wiley
Ph.D. Student, Health Psychology
Programmer Analyst II, ATS Statistical Consulting Group
University of California, Los Angeles
https://joshuawiley.com/



[Rd] Error in gzfile(file, mode) when checking a package with rcmd check
Joshua Wiley