From pgilbert at bank-banque-canada.ca  Wed Jun 24 21:29:21 2009
From: pgilbert at bank-banque-canada.ca (Paul Gilbert)
Date: Wed, 24 Jun 2009 15:29:21 -0400
Subject: [Rd] Matrix vignette error in June 24 RC
Message-ID: <4A427E91.5000601@bank-banque-canada.ca>

I am getting the following problem with make check-all on the June 24 
rc. I realize I could probably fix it by installing/setting a path to 
the sty file, but I don't remember having to do that for make check-all 
in the past.

Paul Gilbert
___________
....
checking package 'Matrix'
* checking for working pdflatex ... OK
* using log directory '/home/paul/toolchain/R/src/R-rc/tests/Matrix.Rcheck'
* using R version 2.9.1 RC (2009-06-22 r48830)
* using session charset: UTF-8
* checking for file 'Matrix/DESCRIPTION' ... OK
* this is package 'Matrix' version '0.999375-29'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking for executable files ... OK
* skipping installation test
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies 
.... OK
* checking whether the name space can be loaded with stated dependencies 
.... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
graph.has.weights: no visible global function definition for
?edgeDataDefaults?
graph.wgtMatrix: no visible global function definition for ?numEdges?
graph.wgtMatrix: no visible global function definition for ?nodes?
graph.wgtMatrix: no visible global function definition for
?edgeDataDefaults?
graph.wgtMatrix: no visible global function definition for ?edgeData?
Tsp2grNEL: no visible global function definition for ?ftM2graphNEL?
coerce,graphAM-sparseMatrix: no visible global function definition for
?edgemode?
coerce,graphNEL-TsparseMatrix: no visible global function definition
for ?nodes?
coerce,graphNEL-TsparseMatrix: no visible global function definition
for ?edgemode?
coerce,graphNEL-TsparseMatrix: no visible global function definition
for ?edgeWeights?
Logic,ltCMatrix-ltCMatrix: no visible global function definition for
?forceTriangular?
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
Running ?base-matrix-fun.R?
Running ?bind.R?
Comparing ?bind.Rout? to ?bind.Rout.save? ... OK
Running ?Class+Meth.R?
Running ?dg_Matrix.R?
Running ?dpo-test.R?
Running ?dtpMatrix.R?
Running ?factorizing.R?
Running ?group-methods.R?
Running ?indexing.R?
Comparing ?indexing.Rout? to ?indexing.Rout.save? ... OK
Running ?matprod.R?
Running ?matr-exp.R?
Running ?other-pkgs.R?
Running ?Simple.R?
Running ?validObj.R?
Running ?write-read.R?
OK
* checking package vignettes in 'inst/doc' ... NOTE
*** PDFLaTeX Errors ***
File 
/home/paul/toolchain/R/src/R-rc/tests/Matrix.Rcheck/inst/doc/Intro2Matrix.Rnw 
:
Running 'texi2dvi' on 'Intro2Matrix.tex' failed.
LaTeX errors:
! LaTeX Error: File `fullpage.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.5 \usepackage
[authoryear,round]{natbib}^^M
! ==> Fatal error occurred, no output PDF file produced!
File 
/home/paul/toolchain/R/src/R-rc/tests/Matrix.Rcheck/inst/doc/sparseModels.Rnw 
:
Running 'texi2dvi' on 'sparseModels.tex' failed.
LaTeX errors:
! LaTeX Error: File `fullpage.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.4 \usepackage
{myVignette}^^M
! ==> Fatal error occurred, no output PDF file produced!
* checking PDF version of manual ... OK

make[1]: Leaving directory `/home/paul/toolchain/R/src/R-rc/tests'
paul at dualx:~/toolchain/R/src/R-rc$
====================================================================================

La version fran?aise suit le texte anglais.

------------------------------------------------------------------------------------

This email may contain privileged and/or confidential in...{{dropped:26}}



[Rd] Matrix vignette error in June 24 RC
Paul Gilbert