From hpages at fhcrc.org  Wed May 17 23:46:54 2006
From: hpages at fhcrc.org (Herve Pages)
Date: Wed, 17 May 2006 14:46:54 -0700
Subject: [Rd] 'R CMD build' ignoring segfaults occuring during the vignettes
	creation
In-Reply-To: <20060517203730.3158DCD14@slim.kubism.ku.dk>
References: <20060517203730.3158DCD14@slim.kubism.ku.dk>
Message-ID: <446B99CE.1090401@fhcrc.org>

Sorry for erroneous subject of my previous post. Here it goes again.
----------------------------------------------------------------------------

Hi,

Something else I'd like to report.
If a segmentation fault occurs during the "creating vignettes" step,
then 'R CMD build' ignores the problem and end up building the source
package anyway:

   /loc/biocbuild/1.9d/R/bin/R CMD build RMAGEML
   * checking for file 'RMAGEML/DESCRIPTION' ... OK
   * preparing 'RMAGEML':

   ...

   * DONE (RMAGEML)
   * creating vignettes ...sh: line 1:  8070 Segmentation fault      '/loc/biocbuild/1.9d/R/bin/R' --vanilla --no-save
--quiet /tmp/Rout656233925 2>&1
    OK
   * cleaning src
   * removing junk files
   * checking for LF line-endings in source files
   * checking for empty or unneeded directories
   * building 'RMAGEML_2.7.0.tar.gz'

'R CMD check' behaves the same way during the "checking package vignettes" step.
I have observed this problem with R 2.3.0 and R 2.4.0 devel (r37925).

Best,

H.

-- 
------------------------
Herv? Pag?s
E-mail: hpages at fhcrc.org
Phone: (206) 667-5791
   Fax: (206) 667-1319



[Rd] 'R CMD build' ignoring segfaults occuring during the vignettes creation
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