From hpages at fredhutch.org  Tue Jan 30 23:24:17 2018
From: hpages at fredhutch.org (=?UTF-8?B?SGVydsOpIFBhZ8Oocw==?=)
Date: Tue, 30 Jan 2018 14:24:17 -0800
Subject: [Rd] as.list method for by Objects
In-Reply-To: <SY3PR01MB07474F9CEBBC61FD2A152E58CDE40@SY3PR01MB0747.ausprd01.prod.outlook.com>
References: <SY3PR01MB07474F9CEBBC61FD2A152E58CDE40@SY3PR01MB0747.ausprd01.prod.outlook.com>
Message-ID: <02275be4-b015-0860-8733-efb2b6b17996@fredhutch.org>

I agree that it makes sense to expect as.list() to perform
a "strict coercion" i.e. to return an object of class "list",
*even* on a list derivative. That's what as( , "list") does
by default:

   # on a data.frame object
   as(data.frame(), "list")  # object of class "list"
                             # (but strangely it drops the names)

   # on a by object
   x <- by(warpbreaks[, 1:2], warpbreaks[,"tension"], summary)
   as(x, "list")  # object of class "list"

More generally speaking as() is expected to perform "strict
coercion" by default, unless called with 'strict=FALSE'.

That's also what as.list() does on a data.frame:

   as.list(data.frame())  # object of class "list"

FWIW as.numeric() also performs "strict coercion" on an integer
vector:

   as.numeric(1:3)  # object of class "numeric"

So an as.list.env method that does the same as as(x, "list")
would bring a small touch of consistency in an otherwise
quite inconsistent world of coercion methods(*).

H.

(*) as(data.frame(), "list", strict=FALSE) doesn't do what you'd
     expect (just one of many examples)


On 01/29/2018 05:00 PM, Dario Strbenac wrote:
> Good day,
> 
> I'd like to suggest the addition of an as.list method for a by object that actually returns a list of class "list". This would make it safer to do type-checking, because is.list also returns TRUE for a data.frame variable and using class(result) == "list" is an alternative that only returns TRUE for lists. It's also confusing initially that
> 
>> class(x)
> [1] "by"
>> is.list(x)
> [1] TRUE
> 
> since there's no explicit class definition for "by" and no mention if it has any superclasses.
> 
> --------------------------------------
> Dario Strbenac
> University of Sydney
> Camperdown NSW 2050
> Australia
> 
> ______________________________________________
> R-devel at r-project.org mailing list
> https://urldefense.proofpoint.com/v2/url?u=https-3A__stat.ethz.ch_mailman_listinfo_r-2Ddevel&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAvimeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=8nXbMrKus1XsG7MluCRy3sluJKKhMVwOPHtudDpYJ4o&s=qDnEZOWalov3E9h1dajp8RLURfRz0-nbwH721jFAcEo&e=
> 

-- 
Herv? Pag?s

Program in Computational Biology
Division of Public Health Sciences
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[Rd] as.list method for by Objects
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