From ripley at stats.ox.ac.uk  Tue May  9 13:03:18 2006
From: ripley at stats.ox.ac.uk (ripley at stats.ox.ac.uk)
Date: Tue,  9 May 2006 13:03:18 +0200 (CEST)
Subject: [Rd] Rmpi instlation problem (PR#8846)
Message-ID: <20060509110318.61023CD3C@slim.kubism.ku.dk>

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First, please do not abuse the bug reporting address to report errors in 
your own system or in a contributed package: see the FAQ and posting 
guide.  Basic information is missing here, but this looks like a x86_64 
version of Linux.

The message here is very clear: the error is in /usr/local/lib/libmpi.a.
This issue is discussed in the R-admin manual, so please consult it.
You need to re-build your installation of MPI as the message suggests.

On Tue, 9 May 2006, ebarreto at igc.gulbenkian.pt wrote:

> Ive tryed this:
>
> R CMD INSTALL Rmpi_0.5-2.tar.gz
>
> But occurred this error:
>
> gcc -shared -L/usr/local/lib64 -o Rmpi.so conversion.o internal.o RegQuery.o
> Rmpi.o -lmpi -llam -lutil -lpthread   -L/usr/local/lib64/R/lib -lR
> /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin
> /ld: /usr/local/lib/libmpi.a(infoset.o): relocation R_X86_64_32 can not be
> used when making a shared object; recompile with -fPIC
> /usr/local/lib/libmpi.a: could not read symbols: Bad value
> collect2: ld returned 1 exit status
> make: *** [Rmpi.so] Error 1
> chmod: cannot access `/usr/local/lib64/R/library/Rmpi/libs/*': No such file
> or directory
> ERROR: compilation failed for package 'Rmpi'
> ** Removing '/usr/local/lib64/R/library/Rmpi'
>
> May you give me some advice
>
> Best
> EBH
>
>
> --------------------------------------------------------
> Emiliano Barreto_Hernandez
> Profesor Asociado
> Colombia EMBnet Node Manager
> Centro de Bioinform?tica
> Instituto de Biotecnolog?a - Universidad Nacional de Colombia
> Edificio Manuel Ancizar
> Bogot? - Colombia
> Tel +57 3165000 ext 16956 Fax +571 3165415
> ebarretoh at unal.edu.co
> http://bioinf.ibun.unal.edu.co
> http://www.co.embnet.org
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595
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[Rd] Rmpi instlation problem (PR#8846)
ripley at stats.ox.ac.uk