From simon.urbanek at r-project.org  Wed Sep 14 16:13:03 2011
From: simon.urbanek at r-project.org (Simon Urbanek)
Date: Wed, 14 Sep 2011 10:13:03 -0400
Subject: [Rd] Building R package with precompiled shared library
In-Reply-To: <6441154A9FF1CD4386AF4ABF141A056D2A74C013@WMEXOSCD2-N1.bocad.bank-banque-canada.ca>
References: <CABeDHXCznmmUDVRhcDXc-3NXR4PK4A9r_30YLNcTuC1Kihpo6Q@mail.gmail.com>
	<6441154A9FF1CD4386AF4ABF141A056D2A74C013@WMEXOSCD2-N1.bocad.bank-banque-canada.ca>
Message-ID: <D739FDB8-44FE-469D-B7F0-808D2333E596@r-project.org>

On Sep 14, 2011, at 9:52 AM, Paul Gilbert wrote:

> My understanding is that this cannot be done, for both licence and security reasons. The package build expects source code and removes binaries. You can link with binaries that are provided separately from the package, possibly coming from a vendor that sells non-open source code, but you cannot include them in the package.
> 

It is not quite true and it is not the reason for it failing ;). That reason is that libs is the wrong folder to put it in. Note that libs is the folder in the *installed* package that the shared object go to, not in the sources.

Also note that it is practically impossible to provide precompiled .so binaries (legal issues aside) because that would limit the package to one particular architecture and OS yet many R installations have at least two architectures. This also means that you would have to determine at build time where to put it ... (or relay on R installation mechanism but then you must make sure your binary is compatible with the currently built architecture).

In practice this is occasionally done for very specific systems - for example Windows: it can be quite hard to compile some (open source) dependencies on Windows so they can be shipped as static binaries (for both x64 and i386) and used by the build process. On all other systems the system libraries are used instead (for an example of this approach see "png" or "jpeg" packages on CRAN). But still, the shared object (here .dll) is not shipped, because that depends on the R version, so it is created from the static libraries by the R package building process instead.

Cheers,
Simon


> Paul
> 
>> -----Original Message-----
>> From: r-devel-bounces at r-project.org [mailto:r-devel-bounces at r-
>> project.org] On Behalf Of Francesco Finazzi
>> Sent: September 14, 2011 3:41 AM
>> To: r-devel at r-project.org
>> Subject: [Rd] Building R package with precompiled shared library
>> 
>> Dear R users,
>> 
>> we are trying to build a R package that includes a precompiled shared
>> library, let's say mylib.so. We created the skeleton of the package
>> and we moved the mylib.so file into the libs folder that we created at
>> the same level of the folders man and R. Moreover we created the file
>> NAMESPACE and we added the line useDynLib(mylib, .registration=TRUE).
>> The building step seems to work correctly but when we try to install
>> the package we get
>> 
>> ** testing if installed package can be loaded
>> Error in library.dynam(lib, package, package.lib) :
>> shared library 'mylib' not found
>> 
>> we cannot understand what's wrong and where R searches for the mylib.so
>> files.
>> 
>> Any suggestion?
>> 
>> Thanks,
>> 
>> Michela and Francesco
>> 
>> ______________________________________________
>> R-devel at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
> ====================================================================================
> 
> La version fran?aise suit le texte anglais.
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[Rd] Building R package with precompiled shared library
Simon Urbanek