From p.dalgaard at biostat.ku.dk  Sun Nov 23 16:00:51 2003
From: p.dalgaard at biostat.ku.dk (Peter Dalgaard)
Date: Sun Nov 23 15:51:57 2003
Subject: [Rd] make check reg-tests-3
In-Reply-To: <Pine.LNX.4.44.0311231507060.1337-100000@kleigh.nl>
References: <Pine.LNX.4.44.0311231507060.1337-100000@kleigh.nl>
Message-ID: <x2d6bjuo2k.fsf@biostat.ku.dk>

Peter Kleiweg <kleiweg@let.rug.nl> writes:

> Should I submit this as a bug report?

Maybe, but this is not happening on stock RedHat 8.0 and Debian
stable, so you need to be more specific about your setup. In
particular: Are you using nonstandard libraries or compiler options?

> --- reg-tests-3.Rout.save	Thu Jul  3 09:55:40 2003
> +++ reg-tests-3.Rout	Sun Nov 23 13:10:57 2003
> @@ -1,17 +1,18 @@
> 
> -R : Copyright 2003, The R Development Core Team
> -Version 1.8.0 Under development (unstable) (2003-07-03)
> +R : Copyright 2003, The R Foundation for Statistical Computing
> +Version 1.8.1  (2003-11-21), ISBN 3-900051-00-3
> 
>  R is free software and comes with ABSOLUTELY NO WARRANTY.
>  You are welcome to redistribute it under certain conditions.
> -Type `license()' or `licence()' for distribution details.
> +Type 'license()' or 'licence()' for distribution details.
> 
>  R is a collaborative project with many contributors.
> -Type `contributors()' for more information.
> +Type 'contributors()' for more information and
> +'citation()' on how to cite R in publications.
> 
> -Type `demo()' for some demos, `help()' for on-line help, or
> -`help.start()' for a HTML browser interface to help.
> -Type `q()' to quit R.
> +Type 'demo()' for some demos, 'help()' for on-line help, or
> +'help.start()' for a HTML browser interface to help.
> +Type 'q()' to quit R.
> 
>  > ### Regression tests for which the printed output is the issue
>  > ### May fail, e.g. by needing Recommended packages
> @@ -137,7 +138,7 @@
>  54  0.0989545407 -1.357243e-05 -3.683573e-02 -0.028339562 -0.025145841
>  55  0.1644148644 -1.347342e-04  1.507463e-01  0.272775865  0.355144259
>  56 -1.0973102505  2.844224e-04 -2.939639e-01 -0.267067176 -0.586604116
> -57           NaN           NaN           NaN          NaN          NaN
> +57  0.0000000000  0.000000e+00  0.000000e+00  0.000000000  0.000000000
>  58  1.1181936467 -1.814925e-04  1.820092e-01  0.230407448  0.281788680
>  59 -0.1289781075  2.595372e-05 -3.776833e-02 -0.058580136 -0.126069473
>  60  0.4827651281 -1.458463e-04  9.396412e-02 -0.005593267  0.099263965
> @@ -231,7 +232,7 @@
>  54 -0.0150792891   -0.0425585103  6.777594e-03  0.0030583353 -0.0591176911
>  55  0.4668348880   -0.0212547234  4.732189e-01  0.4185931034  0.2944838529
>  56 -0.7432312183   -0.2735589895 -6.870778e-02 -0.0393632338  0.1816128390
> -57           NaN             NaN           NaN           NaN           NaN
> +57  0.0000000000    0.0000000000  0.000000e+00  0.0000000000  0.0000000000
>  58  0.1945880055   -0.5587521455 -2.266734e-01 -0.3613221042 -0.5509923750
>  59 -0.0900361434    0.0807855154 -8.877433e-04 -0.0437027380  0.0203231292
>  60  0.2757970992   -0.3494459094  2.397384e-01  0.1279587545 -0.1512732820
> @@ -325,7 +326,7 @@
>  54 -0.0052948316  0.0043390590 -0.0062558306   -0.0100922249  -0.0036764450
>  55  0.3245941919  0.4533108376 -0.1196342985   -0.0946588832   0.0778256270
>  56  0.1438282891 -0.5411631576  0.0968253310    0.3927869929   0.2777652749
> -57           NaN           NaN           NaN             NaN            NaN
> +57  0.0000000000  0.0000000000  0.0000000000    0.0000000000   0.0000000000
>  58 -0.5770947483 -0.1184054962 -0.1740228604   -0.0285545091   0.7693037902
>  59  0.0412280879 -0.0075198458  0.0438882586    0.0121450418  -0.1252262379
>  60  0.3533541160  0.2760694598 -0.1036620689    0.1001975219   0.0703124944
> @@ -379,7 +380,7 @@
>        49       50       51       52       53       54       55       56
>  3.588734 3.589710 3.583459 3.581755 3.599157 3.599895 3.528075 3.559578
>        57       58       59       60       61       62       63       64
> -     NaN 3.523963 3.598459 3.571771 3.582319 3.600406 3.596626 3.592960
> +3.601231 3.523963 3.598459 3.571771 3.582319 3.600406 3.596626 3.592960
>        65       66       67       68       69       70       71       72
>  3.583325 3.600828 3.569987 3.592482 3.599979 3.580547 3.600799 3.599768
>        73       74       75       76       77       78       79       80
> @@ -432,44 +433,57 @@
>  Potentially influential observations of
>  	 lm(formula = 1000/MPG.city ~ Weight + Cylinders + Type + EngineSize +      DriveTrain, data = Cars93) :
> 
> -   dfb.1_ dfb.Wght dfb.Cyl4 dfb.Cyl5 dfb.Cyl6 dfb.Cyl8 dfb.Cyln dfb.TypL
> -8  -0.16   0.00    -0.10    -0.07    -0.24    -0.44     0.01     0.12
> -19 -0.03   0.09    -0.01    -0.03     0.00    -0.01    -0.03     0.08
> -28  0.11  -0.15     0.04     0.02     0.02     0.02     0.04     0.07
> -39 -0.19   0.05     0.34     0.21     0.25     0.18     0.18    -0.01
> -42  0.12  -0.04    -0.30    -0.17    -0.28    -0.26    -0.11    -0.03
> -57   NaN    NaN      NaN      NaN      NaN      NaN      NaN      NaN
> -66 -0.03   0.04    -0.02    -0.03    -0.01     0.00    -0.02    -0.01
> -80  0.18   0.00    -0.31    -0.17    -0.24    -0.19    -0.15     0.00
> -83  0.01   0.01    -0.04    -0.03    -0.04    -0.03    -0.02     0.00
> -87 -0.03   0.04    -0.01    -0.04    -0.04    -0.03    -0.02     0.04
> -89 -0.11   0.11    -0.05     0.28    -0.06    -0.04    -0.06    -0.01
> -93 -0.11   0.11    -0.05    -0.45    -0.06    -0.04    -0.06    -0.01
> -   dfb.TypM dfb.TypSm dfb.TypSp dfb.TypV dfb.EngS dfb.DrTF dfb.DrTR dffit
> -8   0.00     0.21      0.06     -0.04     0.47    -0.04     0.03     0.73
> -19  0.01     0.00     -0.04     -0.01    -0.15     0.01     0.02    -0.24
> -28  0.08    -0.08     -0.09      0.16     0.06     0.09     0.12    -0.26
> -39 -0.01     0.04      0.01     -0.06     0.01    -0.08    -0.08    -0.44
> -42  0.01    -0.42      0.01     -0.03     0.18    -0.10    -0.11    -0.89
> -57   NaN      NaN       NaN       NaN      NaN      NaN      NaN      NaN
> -66 -0.02     0.01      0.01      0.02    -0.03     0.05     0.03     0.08
> -80  0.01     0.01     -0.02     -0.07     0.01    -0.18    -0.14     0.45
> -83  0.00     0.00      0.00      0.00     0.00     0.01     0.01     0.05
> -87  0.03     0.02      0.03      0.06    -0.02    -0.03    -0.02     0.14
> -89 -0.07     0.05      0.04      0.08    -0.06     0.12     0.10     0.64
> -93 -0.07     0.05      0.04      0.08    -0.06     0.12     0.10    -0.64
> -   cov.r   cook.d  hat
> -8   1.71_*  0.04    0.39
> -19  2.09_*  0.00    0.43
> -28  1.86_*  0.00    0.36
> -39  1.76_*  0.01    0.36
> -42  0.13_*  0.05    0.06
> -57   NaN     Inf_*  1.00_*
> -66  1.63_*  0.00    0.26
> -80  1.92_*  0.01    0.40
> -83  1.88_*  0.00    0.36
> -87  1.60_*  0.00    0.25
> -89  2.68_*  0.03    0.57_*
> -93  2.68_*  0.03    0.57_*
> +   dfb.1_       dfb.Wght     dfb.Cyl4     dfb.Cyl5     dfb.Cyl6
> +8  -1.60000e-01  0.00000e+00 -1.00000e-01 -7.00000e-02 -2.40000e-01
> +19 -3.00000e-02  9.00000e-02 -1.00000e-02 -3.00000e-02  0.00000e+00
> +28  1.10000e-01 -1.50000e-01  4.00000e-02  2.00000e-02  2.00000e-02
> +39 -1.90000e-01  5.00000e-02  3.40000e-01  2.10000e-01  2.50000e-01
> +42  1.20000e-01 -4.00000e-02 -3.00000e-01 -1.70000e-01 -2.80000e-01
> +57  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
> +66 -3.00000e-02  4.00000e-02 -2.00000e-02 -3.00000e-02 -1.00000e-02
> +80  1.80000e-01  0.00000e+00 -3.10000e-01 -1.70000e-01 -2.40000e-01
> +83  1.00000e-02  1.00000e-02 -4.00000e-02 -3.00000e-02 -4.00000e-02
> +87 -3.00000e-02  4.00000e-02 -1.00000e-02 -4.00000e-02 -4.00000e-02
> +89 -1.10000e-01  1.10000e-01 -5.00000e-02  2.80000e-01 -6.00000e-02
> +93 -1.10000e-01  1.10000e-01 -5.00000e-02 -4.50000e-01 -6.00000e-02
> +   dfb.Cyl8     dfb.Cyln     dfb.TypL     dfb.TypM     dfb.TypSm
> +8  -4.40000e-01  1.00000e-02  1.20000e-01  0.00000e+00  2.10000e-01
> +19 -1.00000e-02 -3.00000e-02  8.00000e-02  1.00000e-02  0.00000e+00
> +28  2.00000e-02  4.00000e-02  7.00000e-02  8.00000e-02 -8.00000e-02
> +39  1.80000e-01  1.80000e-01 -1.00000e-02 -1.00000e-02  4.00000e-02
> +42 -2.60000e-01 -1.10000e-01 -3.00000e-02  1.00000e-02 -4.20000e-01
> +57  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
> +66  0.00000e+00 -2.00000e-02 -1.00000e-02 -2.00000e-02  1.00000e-02
> +80 -1.90000e-01 -1.50000e-01  0.00000e+00  1.00000e-02  1.00000e-02
> +83 -3.00000e-02 -2.00000e-02  0.00000e+00  0.00000e+00  0.00000e+00
> +87 -3.00000e-02 -2.00000e-02  4.00000e-02  3.00000e-02  2.00000e-02
> +89 -4.00000e-02 -6.00000e-02 -1.00000e-02 -7.00000e-02  5.00000e-02
> +93 -4.00000e-02 -6.00000e-02 -1.00000e-02 -7.00000e-02  5.00000e-02
> +   dfb.TypSp    dfb.TypV     dfb.EngS     dfb.DrTF     dfb.DrTR
> +8   6.00000e-02 -4.00000e-02  4.70000e-01 -4.00000e-02  3.00000e-02
> +19 -4.00000e-02 -1.00000e-02 -1.50000e-01  1.00000e-02  2.00000e-02
> +28 -9.00000e-02  1.60000e-01  6.00000e-02  9.00000e-02  1.20000e-01
> +39  1.00000e-02 -6.00000e-02  1.00000e-02 -8.00000e-02 -8.00000e-02
> +42  1.00000e-02 -3.00000e-02  1.80000e-01 -1.00000e-01 -1.10000e-01
> +57  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00  0.00000e+00
> +66  1.00000e-02  2.00000e-02 -3.00000e-02  5.00000e-02  3.00000e-02
> +80 -2.00000e-02 -7.00000e-02  1.00000e-02 -1.80000e-01 -1.40000e-01
> +83  0.00000e+00  0.00000e+00  0.00000e+00  1.00000e-02  1.00000e-02
> +87  3.00000e-02  6.00000e-02 -2.00000e-02 -3.00000e-02 -2.00000e-02
> +89  4.00000e-02  8.00000e-02 -6.00000e-02  1.20000e-01  1.00000e-01
> +93  4.00000e-02  8.00000e-02 -6.00000e-02  1.20000e-01  1.00000e-01
> +   dffit        cov.r          cook.d       hat
> +8   7.30000e-01  1.71000e+00_*  4.00000e-02  3.90000e-01
> +19 -2.40000e-01  2.09000e+00_*  0.00000e+00  4.30000e-01
> +28 -2.60000e-01  1.86000e+00_*  0.00000e+00  3.60000e-01
> +39 -4.40000e-01  1.76000e+00_*  1.00000e-02  3.60000e-01
> +42 -8.90000e-01  1.30000e-01_*  5.00000e-02  6.00000e-02
> +57  4.00000e-02  1.09307e+16_*  0.00000e+00  1.00000e+00_*
> +66  8.00000e-02  1.63000e+00_*  0.00000e+00  2.60000e-01
> +80  4.50000e-01  1.92000e+00_*  1.00000e-02  4.00000e-01
> +83  5.00000e-02  1.88000e+00_*  0.00000e+00  3.60000e-01
> +87  1.40000e-01  1.60000e+00_*  0.00000e+00  2.50000e-01
> +89  6.40000e-01  2.68000e+00_*  3.00000e-02  5.70000e-01_*
> +93 -6.40000e-01  2.68000e+00_*  3.00000e-02  5.70000e-01_*
>  > ## only last two cols in row 57 should be influential
>  >
> 
> Version:
>  platform = i686-pc-linux-gnu
>  arch = i686
>  os = linux-gnu
>  system = i686, linux-gnu
>  status =
>  major = 1
>  minor = 8.1
>  year = 2003
>  month = 11
>  day = 21
>  language = R
> 
> Search Path:
>  .GlobalEnv, package:methods, package:ctest, package:mva, package:modreg, package:nls, package:ts, Autoloads, package:base
> 
> ______________________________________________
> R-devel@stat.math.ethz.ch mailing list
> https://www.stat.math.ethz.ch/mailman/listinfo/r-devel
> 

-- 
   O__  ---- Peter Dalgaard             Blegdamsvej 3  
  c/ /'_ --- Dept. of Biostatistics     2200 Cph. N   
 (*) \(*) -- University of Copenhagen   Denmark      Ph: (+45) 35327918
~~~~~~~~~~ - (p.dalgaard@biostat.ku.dk)             FAX: (+45) 35327907


[Rd] make check reg-tests-3
Peter Dalgaard