From murdoch.duncan at gmail.com  Sun Jan 26 14:54:35 2014
From: murdoch.duncan at gmail.com (Duncan Murdoch)
Date: Sun, 26 Jan 2014 08:54:35 -0500
Subject: [Rd] Trouble installing package in development version of R
In-Reply-To: <CAN1m9nDjbtGy7GoHWY-oL7Y+=CcgxReXGd_sRW_i4Em3iRpu+Q@mail.gmail.com>
References: <CAN1m9nDjbtGy7GoHWY-oL7Y+=CcgxReXGd_sRW_i4Em3iRpu+Q@mail.gmail.com>
Message-ID: <52E5139B.8040804@gmail.com>

On 14-01-26 12:44 AM, Roberta Jankowski wrote:> Dear R-devel,
 >
 > I'm trying to get practice learning more about the internals of R so am
 > experimenting with the development version. I successfully cloned the SVN
 > repo and built and installed R. I am using 2014-01-23 r64861.
 >
 > However, I cannot seem to install the lattice package. I tried within R
 > using install.packages and got the error
 > sh: 1: 1: not found

That message comes from "sh", the command shell that R is running.

 >
 > I then downloaded the tar.gz and tried it as follows:
 > $ sudo R CMD INSTALL lattice_0.20-24.tar.gz
 >
 > * installing to library ?/home/rjan/R/i686-pc-linux-gnu-library/3.1?
 > * installing *source* package ?lattice? ...
 > ** package ?lattice? successfully unpacked and MD5 sums checked
 > ** libs
 > sh: 1: 1: not found

Same here.  However, notice that some install messages printed, so the 
install started, it just failed partway through.

 > ERROR: compilation failed for package ?lattice?
 > * removing ?/home/rjan/R/i686-pc-linux-gnu-library/3.1/lattice?
 >
 > I then looked at the help for R CMD INSTALL and saw debug flag so I did:
 > $ sudo R CMD INSTALL -d lattice_0.20-24.tar.gz
 > processing ?lattice_0.20-24.tar.gz?
 > a file
 > * installing to library ?/home/rjan/R/i686-pc-linux-gnu-library/3.1?
 > * build_help_types=
 > * DBG: 'R CMD INSTALL' now doing do_install()
 > * created lock directory
 > ?/home/rjan/R/i686-pc-linux-gnu-library/3.1/00LOCK-lattice?
 > * installing *source* package ?lattice? ...
 > ** package ?lattice? successfully unpacked and MD5 sums checked
 > ** libs
 > about to run R CMD SHLIB -o lattice.so init.c threeDplot.c
 > sh: 1: 1: not found
 > ERROR: compilation failed for package ?lattice?
 > * removing ?/home/rjan/R/i686-pc-linux-gnu-library/3.1/lattice?

So it looks as though R CMD SHLIB is the step that failed.  You can look 
it up in Writing R Externals, it is supposed to compile those C files 
into the output lattice.so.  Something is going wrong here.
My guess is that you don't have the compiler installed, or R CMD SHLIB 
is looking in the wrong place, or something like that.
 >
 >
 > I then did
 > $ cd lattice/src
 > $ R CMD SHLIB -d -o lattice.so init.c threeDplot.c
 > sh: 1: 1: not found
 >
 > I'm interested in two things.
 > 1 does anyone know what's going on?
 > 2. how could I have figured this out myself? What could I have done
 > differently for the R CMD SHLIB command to get more output (for example
 > where this line of code was)?

You can look at the online help within R, ?SHLIB, and it will tell you 
that -n will give you some diagnostic information.  You can also try

R CMD SHLIB --help

to see a bit more.

One other thing you can do if you need to ask here again, is to post 
system and version information printed by R by sessionInfo().  And 
please don't post in HTML.

Duncan Murdoch

 >
 > I have read R installation and administration manual but I did not
 > understand a lot so I'm probably missing something that is in there 
but I'm
 > not sure what.
 >
 > Thank you for your patience,
 >
 > Roberta
 >
 > 	[[alternative HTML version deleted]]
 >
 >
 >
 > ______________________________________________
 > R-devel at r-project.org mailing list
 > https://stat.ethz.ch/mailman/listinfo/r-devel
 >



[Rd] Trouble installing package in development version of R
Duncan Murdoch