process_id
int64 1
732
| process_name
stringlengths 6
60
| kingdom
float64 | or_gates
bool 1
class | and_gates
bool 1
class | not_gates
bool 1
class | feedback_loops
bool 1
class | state_machines
bool 1
class | decision_trees
bool 1
class | flowchart_link
stringlengths 103
190
⌀ |
|---|---|---|---|---|---|---|---|---|---|
1
|
Nutrient Gradient Sensing
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_chemotaxis.html#process-6-2-nutrient-gradient-sensing
|
2
|
Stress Response Decision
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_chemotaxis.html#process-7-3-stress-response-decision
|
3
|
Quorum Sensing Threshold
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_chemotaxis.html#process-8-4-quorum-sensing-threshold
|
4
|
Antibiotic Resistance Decision
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_chemotaxis.html#process-9-5-antibiotic-resistance-decision
|
5
|
Biofilm Formation Decision
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_chemotaxis.html#process-10-6-biofilm-formation-decision
|
6
|
Sporulation Timing Decision
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_chemotaxis.html#process-11-7-sporulation-timing-decision
|
7
|
Horizontal Gene Transfer Decision
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_chemotaxis.html#process-12-8-horizontal-gene-transfer-decision
|
8
|
AHL Autoinducer Synthesis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_quorum_sensing.html#process-1-ahl-autoinducer-synthesis
|
9
|
AHL Signal Detection
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_quorum_sensing.html#process-2-ahl-signal-detection
|
10
|
Population Density Assessment
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_quorum_sensing.html#process-3-population-density-assessment
|
11
|
Biofilm Formation Response
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/bacterial_decision_systems_batch01_quorum_sensing.html#process-10-4-biofilm-formation-response
|
12
|
Bacterial Implementation of Viral Decision Logic
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/synthetic_circuit_construction.html#process-4-1-bacterial-implementation-of-viral-decision-logic
|
13
|
Bacterial Transcription Factor Circuit
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/synthetic_circuit_construction.html#process-2-bacterial-transcription-factor-circuit
|
14
|
Experimental Validation Protocol
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/synthetic_circuit_construction.html#process-3-experimental-validation-protocol
|
15
|
Framework Validation Metrics
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/synthetic_circuit_construction.html#process-4-framework-validation-metrics
|
16
|
Iron Homeostasis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
17
|
Siderophore Synthesis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
18
|
Iron Uptake Systems
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
19
|
Heme Acquisition
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
20
|
Iron Storage
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
21
|
Iron-Sulfur Cluster Assembly
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
22
|
Oxidative Iron Response
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
23
|
Iron Export and Detoxification
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
24
|
Iron Homeostasis (Fur Regulation)
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
25
|
Siderophore Synthesis (Enterobactin)
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
26
|
Iron Storage (Ferritin)
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch10_iron_homeostasis.html
|
27
|
Chromosome Replication
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_cell_division.html
|
28
|
Chromosome Segregation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_cell_division_segregation.html
|
29
|
Cell Elongation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_cell_division.html
|
30
|
Septum Formation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_cell_division.html
|
31
|
Cell Constriction
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_cell_division.html
|
32
|
Cell Separation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_cell_division.html
|
33
|
Daughter Cell Formation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_cell_division.html
|
34
|
Division Completion
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_cell_division.html
|
35
|
Drug Detection
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
36
|
Efflux Pumps
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
37
|
Target Modification
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
38
|
Drug Inactivation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
39
|
Membrane Alteration
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
40
|
Biofilm Protection
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
41
|
Persister Formation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
42
|
Resistance Evolution
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_antibiotic_resistance.html
|
43
|
Beta-Galactosidase
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
44
|
Chemotaxis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch08_motility_chemotaxis.html
|
45
|
SOS Response
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_stress_response.html
|
46
|
Tryptophan Biosynthesis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
47
|
Iron Homeostasis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
48
|
Heat Shock Response
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch10_stress_response_adaptation.html
|
49
|
Nitrogen Metabolism
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
50
|
Cell Division
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_cell_division_segregation.html
|
51
|
Biofilm Formation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/s_aureus_batch01_pathogenicity_biofilm.html
|
52
|
CRISPR-Cas
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
53
|
Beta-Galactosidase (Lac Operon)
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes.html
|
54
|
Phage Defense (CRISPR-Cas)
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes.html
|
55
|
Glycolysis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch05_energy_metabolism.html
|
56
|
TCA Cycle
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch05_central_metabolism.html
|
57
|
Pentose Phosphate Pathway
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch05_energy_metabolism.html
|
58
|
Fatty Acid Metabolism
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch05_energy_metabolism.html
|
59
|
Amino Acid Metabolism
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch04_metabolic_pathways.html
|
60
|
Nucleotide Metabolism
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch14_specialized_metabolism.html
|
61
|
Anaerobic Respiration
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch06_respiration_energy.html
|
62
|
Metabolic Regulation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch04_metabolic_pathways.html
|
63
|
Beta-Galactosidase (reuse from ecoli_10_processes.html)
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch03_gene_regulation_transcription.html
|
64
|
Tryptophan Biosynthesis (reuse from ecoli_10_processes.html)
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch03_gene_regulation_transcription.html
|
65
|
Arabinose Operon
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch03_gene_regulation_transcription.html
|
66
|
CAP-cAMP Global Regulation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch03_gene_regulation_transcription.html
|
67
|
Sigma Factor Competition
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch03_gene_regulation_transcription.html
|
68
|
RNA Polymerase Recycling
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch03_gene_regulation_transcription.html
|
69
|
Transcription Termination
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch08_chromatin_transcription.html
|
70
|
Attenuation Control
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_transcription_regulation.html
|
71
|
Transcription Initiation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch08_chromatin_transcription.html
|
72
|
Sigma Factor Regulation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_transcription_regulation.html
|
73
|
Operon Regulation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_transcription_regulation.html
|
74
|
Transcription Termination
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch08_chromatin_transcription.html
|
75
|
Attenuation Control
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_transcription_regulation.html
|
76
|
Antisense Regulation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_transcription_regulation.html
|
77
|
Riboswitch Regulation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_transcription_regulation.html
|
78
|
Global Regulation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_transcription_regulation.html
|
79
|
Beta-Galactosidase
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
80
|
Chemotaxis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch08_motility_chemotaxis.html
|
81
|
SOS Response
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch09_stress_response.html
|
82
|
Tryptophan Biosynthesis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
83
|
Iron Homeostasis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
84
|
Heat Shock Response
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch10_stress_response_adaptation.html
|
85
|
Nitrogen Metabolism
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
86
|
Cell Division
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_cell_division_segregation.html
|
87
|
Biofilm Formation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/s_aureus_batch01_pathogenicity_biofilm.html
|
88
|
CRISPR-Cas
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_10_processes_html_only.html
|
89
|
Active Transport
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch07_transport_membrane.html
|
90
|
Passive Transport
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch07_transport_membrane.html
|
91
|
Membrane Biogenesis
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch06_lipid_membrane_biology.html
|
92
|
Protein Secretion
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/yeast_batch16_membrane_transport.html
|
93
|
Membrane Proteins
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch07_transport_membrane.html
|
94
|
Lipid Transport
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch07_transport_membrane.html
|
95
|
Membrane Dynamics
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch07_transport_membrane.html
|
96
|
Cellular Organization
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch07_transport_membrane.html
|
97
|
Cell Division
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_cell_division_segregation.html
|
98
|
Chromosome Segregation
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_cell_division_segregation.html
|
99
|
Min System
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_cell_division_segregation.html
|
100
|
Nucleoid Occlusion
| null | false
| false
| false
| false
| false
| false
|
https://huggingface.co/datasets/garywelz/glmp-biological-processes/resolve/main/ecoli_batch02_cell_division_segregation.html
|
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