text: The directed Physarum dynamics is known to solve positive linear programs: minimize @math subject to @math and @math for a positive cost vector @math . The directed Physarum dynamics evolves a positive vector @math according to the dynamics @math . Here @math is the solution to @math that minimizes the "energy" @math . In this paper, we study the non-uniform directed dynamics @math , where @math is a positive diagonal matrix. The non-uniform dynamics is more complex than the uniform dynamics (with @math being the identity matrix), as it allows each component of @math to react with different speed to the differences between @math and @math . Our contribution is to show that the non-uniform directed dynamics solves positive linear programs.
  @cite_11: We describe here a mathematical model of the adaptive dynamics of a transport network of the true slime mold Physarum polycephalum, an amoeboid organism that exhibits path-finding behavior in a maze. This organism possesses a network of tubular elements, by means of which nutrients and signals circulate through the plasmodium. When the organism is put in a maze, the network changes its shape to connect two exits by the shortest path. This process of path-finding is attributed to an underlying physiological mechanism: a tube thickens as the flux through it increases. The experimental evidence for this is, however, only qualitative. We constructed a mathematical model of the general form of the tube dynamics. Our model contains a key parameter corresponding to the extent of the feedback regulation between the thickness of a tube and the flux through it. We demonstrate the dependence of the behavior of the model on this parameter.
summary: The paper @cite_11 proposes a mathematical model for the behavior of the slime and argues extensively that the model is adequate. Physarum is modeled as an electrical network with time varying resistors. We have a simple graph @math with two distinguished nodes modeling the food sources. Each edge @math has a positive length @math and a positive capacity @math ; @math is fixed, but @math is a function of time. The resistance @math of @math is @math . In the electrical network defined by these resistances, a current of value 1 is forced from one of the distinguished nodes to the other. For an (arbitrarily oriented) edge @math , let @math be the resulting current over @math . Then, the capacity of @math evolves according to the differential equation where @math is the derivative of @math with respect to time.