text: Time series anomaly detection plays a critical role in automated monitoring systems. Most previous deep learning efforts related to time series anomaly detection were based on recurrent neural networks (RNN). In this paper, we propose a time series segmentation approach based on convolutional neural networks (CNN) for anomaly detection. Moreover, we propose a transfer learning framework that pretrains a model on a large-scale synthetic univariate time series data set and then fine-tunes its weights on small-scale, univariate or multivariate data sets with previously unseen classes of anomalies. For the multivariate case, we introduce a novel network architecture. The approach was tested on multiple synthetic and real data sets successfully.
  @cite_8: A major challenge in brain tumor treatment planning and quantitative evaluation is determination of the tumor extent. The noninvasive magnetic resonance imaging (MRI) technique has emerged as a front-line diagnostic tool for brain tumors without ionizing radiation. Manual segmentation of brain tumor extent from 3D MRI volumes is a very time-consuming task and the performance is highly relied on operator’s experience. In this context, a reliable fully automatic segmentation method for the brain tumor segmentation is necessary for an efficient measurement of the tumor extent. In this study, we propose a fully automatic method for brain tumor segmentation, which is developed using U-Net based deep convolutional networks. Our method was evaluated on Multimodal Brain Tumor Image Segmentation (BRATS 2015) datasets, which contain 220 high-grade brain tumor and 54 low-grade tumor cases. Cross-validation has shown that our method can obtain promising segmentation efficiently.
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  @cite_29: 
  @cite_21: Convolutional networks are powerful visual models that yield hierarchies of features. We show that convolutional networks by themselves, trained end-to-end, pixels-to-pixels, exceed the state-of-the-art in semantic segmentation. Our key insight is to build "fully convolutional" networks that take input of arbitrary size and produce correspondingly-sized output with efficient inference and learning. We define and detail the space of fully convolutional networks, explain their application to spatially dense prediction tasks, and draw connections to prior models. We adapt contemporary classification networks (AlexNet, the VGG net, and GoogLeNet) into fully convolutional networks and transfer their learned representations by fine-tuning to the segmentation task. We then define a novel architecture that combines semantic information from a deep, coarse layer with appearance information from a shallow, fine layer to produce accurate and detailed segmentations. Our fully convolutional network achieves state-of-the-art segmentation of PASCAL VOC (20 relative improvement to 62.2 mean IU on 2012), NYUDv2, and SIFT Flow, while inference takes one third of a second for a typical image.
  @cite_3: Semantic segmentation was seen as a challenging computer vision problem few years ago. Due to recent advancements in deep learning, relatively accurate solutions are now possible for its use in automated driving. In this paper, the semantic segmentation problem is explored from the perspective of automated driving. Most of the current semantic segmentation algorithms are designed for generic images and do not incorporate prior structure and end goal for automated driving. First, the paper begins with a generic taxonomic survey of semantic segmentation algorithms and then discusses how it fits in the context of automated driving. Second, the particular challenges of deploying it into a safety system which needs high level of accuracy and robustness are listed. Third, different alternatives instead of using an independent semantic segmentation module are explored. Finally, an empirical evaluation of various semantic segmentation architectures was performed on CamVid dataset in terms of accuracy and speed. This paper is a preliminary shorter version of a more detailed survey which is work in progress.
  @cite_27: There is large consent that successful training of deep networks requires many thousand annotated training samples. In this paper, we present a network and training strategy that relies on the strong use of data augmentation to use the available annotated samples more efficiently. The architecture consists of a contracting path to capture context and a symmetric expanding path that enables precise localization. We show that such a network can be trained end-to-end from very few images and outperforms the prior best method (a sliding-window convolutional network) on the ISBI challenge for segmentation of neuronal structures in electron microscopic stacks. Using the same network trained on transmitted light microscopy images (phase contrast and DIC) we won the ISBI cell tracking challenge 2015 in these categories by a large margin. Moreover, the network is fast. Segmentation of a 512x512 image takes less than a second on a recent GPU. The full implementation (based on Caffe) and the trained networks are available at this http URL .
  @cite_5: This paper introduces a network for volumetric segmentation that learns from sparsely annotated volumetric images. We outline two attractive use cases of this method: (1) In a semi-automated setup, the user annotates some slices in the volume to be segmented. The network learns from these sparse annotations and provides a dense 3D segmentation. (2) In a fully-automated setup, we assume that a representative, sparsely annotated training set exists. Trained on this data set, the network densely segments new volumetric images. The proposed network extends the previous u-net architecture from by replacing all 2D operations with their 3D counterparts. The implementation performs on-the-fly elastic deformations for efficient data augmentation during training. It is trained end-to-end from scratch, i.e., no pre-trained network is required. We test the performance of the proposed method on a complex, highly variable 3D structure, the Xenopus kidney, and achieve good results for both use cases.
  @cite_16: One of the most important applications of seismic reflection is the hydrocarbon exploration which is closely related to salt deposits analysis. This problem is very important even nowadays due to it's non-linear nature. Taking into account the recent developments in deep learning networks TGS-NOPEC Geophysical Company hosted the Kaggle competition for salt deposits segmentation problem in seismic image data. In this paper, we demonstrate the great performance of several novel deep learning techniques merged into a single neural network which achieved the 27th place (top 1 ) in the mentioned competition. Using a U-Net with ResNeXt-50 encoder pre-trained on ImageNet as our base architecture, we implemented Spatial-Channel Squeeze & Excitation, Lovasz loss, CoordConv and Hypercolumn methods. The source code for our solution is made publicly available at this https URL.
summary: Our approach was influenced by recent successes of deep learning for image segmentation. @cite_21 proposed a fully convolutional network (FCN), where common convolutional architectures for image classification (e.g. AlexNet, the VGG net, and GoogLeNet) are used as encoders, and counterpart deconvolution layers are used for upsampling as decoders. U-Net @cite_27 improved upon the FCN architecture by introducing so-called skip channels between encoding layers and decoding layers into the architecture, so that high-level features and low-level features are concatenated to prevent information loss along deep sequential layers. This architecture was proven successful when applied to segmentation of neuronal structures in electron microscopic images in the original paper. It was subsequently applied to several other biomedical image segmentation tasks (e.g. @cite_5 @cite_29 @cite_8 ) as well as image segmentation problems in earth science (e.g. @cite_16 ), remote sensing (e.g. @cite_28 ), and automated driving (e.g. @cite_3 ).