text: Phenotyping is the process of measuring an organism's observable traits. Manual phenotyping of crops is a labor-intensive, time-consuming, costly, and error prone process. Accurate, automated, high-throughput phenotyping can relieve a huge burden in the crop breeding pipeline. In this paper, we propose a scalable, high-throughput approach to automatically count and segment panicles (heads), a key phenotype, from aerial sorghum crop imagery. Our counting approach uses the image density map obtained from dot or region annotation as the target with a novel deep convolutional neural network architecture. We also propose a novel instance segmentation algorithm using the estimated density map, to identify the individual panicles in the presence of occlusion. With real Sorghum aerial images, we obtain a mean absolute error (MAE) of 1.06 for counting which is better than using well-known crowd counting approaches such as CCNN, MCNN and CSRNet models. The instance segmentation model also produces respectable results which will be ultimately useful in reducing the manual annotation workload for future data.
  @cite_0: This paper aims to develop a method than can accurately estimate the crowd count from an individual image with arbitrary crowd density and arbitrary perspective. To this end, we have proposed a simple but effective Multi-column Convolutional Neural Network (MCNN) architecture to map the image to its crowd density map. The proposed MCNN allows the input image to be of arbitrary size or resolution. By utilizing filters with receptive fields of different sizes, the features learned by each column CNN are adaptive to variations in people head size due to perspective effect or image resolution. Furthermore, the true density map is computed accurately based on geometry-adaptive kernels which do not need knowing the perspective map of the input image. Since exiting crowd counting datasets do not adequately cover all the challenging situations considered in our work, we have collected and labelled a large new dataset that includes 1198 images with about 330,000 heads annotated. On this challenging new dataset, as well as all existing datasets, we conduct extensive experiments to verify the effectiveness of the proposed model and method. In particular, with the proposed simple MCNN model, our method outperforms all existing methods. In addition, experiments show that our model, once trained on one dataset, can be readily transferred to a new dataset.
  @cite_44: In real-world crowd counting applications, the crowd densities vary greatly in spatial and temporal domains. A detection based counting method will estimate crowds accurately in low density scenes, while its reliability in congested areas is downgraded. A regression based approach, on the other hand, captures the general density information in crowded regions. Without knowing the location of each person, it tends to overestimate the count in low density areas. Thus, exclusively using either one of them is not sufficient to handle all kinds of scenes with varying densities. To address this issue, a novel end-to-end crowd counting framework, named DecideNet (DEteCtIon and Density Estimation Network) is proposed. It can adaptively decide the appropriate counting mode for different locations on the image based on its real density conditions. DecideNet starts with estimating the crowd density by generating detection and regression based density maps separately. To capture inevitable variation in densities, it incorporates an attention module, meant to adaptively assess the reliability of the two types of estimations. The final crowd counts are obtained with the guidance of the attention module to adopt suitable estimations from the two kinds of density maps. Experimental results show that our method achieves state-of-the-art performance on three challenging crowd counting datasets.
summary: A simple but elegant member of this family is the multi-column CNN (MCNN) @cite_0 , as seen in Figure , where the component models in the ensemble are CCNNs with the receptive fields in the convolutional kernel designed for a particular head size. The resulting CCNN predictors are then combined into one density map with a fully convolutional layer. The CCNN tends to over estimate the count when the density is very low and under estimate the count near the horizon line where the density is extremely high. This was used advantageously in the DecideNet model @cite_44 where they noted that the counting by detection approach is particularly good when the density is very low. They then used another neural network to estimate an attention map and combine the two approaches.