text: Random Projection (RP) technique has been widely applied in many scenarios because it can reduce high-dimensional features into low-dimensional space within short time and meet the need of real-time analysis of massive data. There is an urgent need of dimensionality reduction with fast increase of big genomics data. However, the performance of RP is usually lower. We attempt to improve classification accuracy of RP through combining other reduction dimension methods such as Principle Component Analysis (PCA), Linear Discriminant Analysis (LDA), and Feature Selection (FS). We compared classification accuracy and running time of different combination methods on three microarray datasets and a simulation dataset. Experimental results show a remarkable improvement of 14.77 in classification accuracy of FS followed by RP compared to RP on BC-TCGA dataset. LDA followed by RP also helps RP to yield a more discriminative subspace with an increase of 13.65 on classification accuracy on the same dataset. FS followed by RP outperforms other combination methods in classification accuracy on most of the datasets.
  @cite_0: There has been considerable interest in random projections, an approximate algorithm for estimating distances between pairs of points in a high-dimensional vector space. Let A in Rn x D be our n points in D dimensions. The method multiplies A by a random matrix R in RD x k, reducing the D dimensions down to just k for speeding up the computation. R typically consists of entries of standard normal N(0,1). It is well known that random projections preserve pairwise distances (in the expectation). Achlioptas proposed sparse random projections by replacing the N(0,1) entries in R with entries in -1,0,1 with probabilities 1 6, 2 3, 1 6, achieving a threefold speedup in processing time.We recommend using R of entries in -1,0,1 with probabilities 1 2√D, 1-1√D, 1 2√D for achieving a significant √D-fold speedup, with little loss in accuracy.
  @cite_6: 
  @cite_3: Random projections have recently emerged as a powerful method for dimensionality reduction. Theoretical results indicate that the method preserves distances quite nicely; however, empirical results are sparse. We present experimental results on using random projection as a dimensionality reduction tool in a number of cases, where the high dimensionality of the data would otherwise lead to burden-some computations. Our application areas are the processing of both noisy and noiseless images, and information retrieval in text documents. We show that projecting the data onto a random lower-dimensional subspace yields results comparable to conventional dimensionality reduction methods such as principal component analysis: the similarity of data vectors is preserved well under random projection. However, using random projections is computationally significantly less expensive than using, e.g., principal component analysis. We also show experimentally that using a sparse random matrix gives additional computational savings in random projection.
summary: In @cite_3 and @cite_0 , RP has been proposed to address the burdensome computation time in dimensionality reduction. In RP, transformation matrix @math is randomly generated. Experiment results @cite_3 @cite_6 have reveals that RP is computationally less expensive with a little distortion of original data. On the other hand, RP may not capture intrinsic structure underlying original data because @math is generated without considering the structure of data.