Metric
stringlengths 11
31
| Prostate_Cancer
stringlengths 1
30
| Non_Cancerous
stringlengths 1
30
|
|---|---|---|
Dataset_Type
|
Tumor samples
|
Benign samples
|
Total_Cells
|
30932
|
12205
|
Total_Genes
|
846
|
779
|
Number_of_Samples
|
7
|
7
|
Number_of_Clusters
|
14
|
14
|
Seurat_Version
|
5.1.0
|
5.1.0
|
Normalization_Method
|
LogNormalize + SCTransform
|
LogNormalize + SCTransform
|
Integration_Method
|
Canonical Correlation Analysis
|
Canonical Correlation Analysis
|
Dimensionality_Reduction
|
PCA + UMAP
|
PCA + UMAP
|
Clustering_Resolution
|
0.5
|
0.5
|
Variable_Features_Count
|
2000 (VST method)
|
2000 (VST method)
|
PCA_Dimensions_Used
|
01:15
|
01:15
|
UMAP_Metric
|
Cosine
|
Cosine
|
Quality_Control_Applied
|
Yes (multi-step)
|
Yes (multi-step)
|
Cell_Cycle_Regression
|
Yes (S.Score + G2M.Score)
|
Yes (S.Score + G2M.Score)
|
Doublet_Removal
|
Yes (scDblFinder)
|
Yes (scDblFinder)
|
Batch_Correction
|
Yes (SCTransform integration)
|
Yes (SCTransform integration)
|
Min_Features_Per_Cell
|
>500
|
>500
|
Ribosomal_Filter_Percentile
|
90th percentile
|
90th percentile
|
Mitochondrial_Filter_Percentile
|
90th percentile
|
90th percentile
|
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