|-
| 2001
| "[[The Days of the Phoenix EP|The Days of the Phoenix]]"
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| 152
| ''The Art of Drowning''
|-
|rowspan="3"| 2003
| "[[Girl's Not Grey]]"
|align="center"| 114
|align="center"| —
|align="center"| 7
|align="center"| 33
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| 22
|rowspan="3"| ''Sing the Sorrow''
|-
| "[[The Leaving Song, Pt. II]]"
|align="center"| —
|align="center"| —
|align="center"| 16
|align="center"| 31
|align="center"| 27
|align="center"| —
|align="center"| —
|align="center"| 43
|-
| "[[Silver and Cold]]"
|align="center"| —
|align="center"| —
|align="center"| 7
|align="center"| 39
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|-
| 2004
| "[[Head Like a Hole]]"
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
| ''[[Grand Theft Auto: San Andreas Official Soundtrack#Disc 2|Grand Theft Auto: San Andreas]]'' soundtrack
|-
|rowspan="2"| 2006
| "[[Miss Murder]]"
|align="center"| 24
|align="center"| 28
|align="center"| 1
|align="center"| 13
|align="center"| 14
|align="center"| —
|align="center"| 93
|align="center"| 44
|rowspan="3"| ''Decemberunderground''
|-
| "[[Love Like Winter]]"
|align="center"| 68
|align="center"| 71
|align="center"| 4
|align="center"| —
|align="center"| 44
|align="center"| —
|align="center"| —
|align="center"| 76
|-
| rowspan="2"|2007
| "[[The Missing Frame]]"
|align="center"| —
|align="center"| —
|align="center"| 17
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|-
| "[[Carcinogen Crush]]"
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| 81
|align="center"| —
|align="center"| —
| Non-album single
|-
|rowspan="1"| 2009
| "[[Medicate]]"
|align="center"| —
|align="center"| —
|align="center"| 7
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|rowspan="2"| ''Crash Love''
|-
|rowspan="1"| 2010
| "[[Beautiful Thieves]]"
|align="center"| —
|align="center"| —
|align="center"| 23
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|align="center"| —
|-
|align="center" colspan="12" style="font-size: 8pt"| "—" denotes a release that did not chart.
|}
Musik Foreninger Organisationer