Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: Investigating usability of MSstatsQC software   MSstatsQC [3] is an open-source software that provides longitudinal system
suitability monitoring tools in the form of control charts for proteomic
experiments. It includes simultaneous tools for the mean and dispersion of
suitability metrics and presents alternative methods of monitoring through
different tabs that are designed in the interface. This research focuses on
investigating the usability of MSstatsQC software and the interpretability of
the designed plots. In this study, we ask 4 test users, from the proteomics
field, to complete a series of tasks and questionnaires. The tasks are designed
to test the usability of the software in terms of importing data files,
selecting appropriate metrics, guide set, and peptides, and finally creating
decision rules (tasks 1 and 3 in appendix). The questionnaires ask about
interpretability of the plots including control charts, box plots, heat maps,
river plots, and radar plots (tasks 1 and 4 in appendix). The goal of the
questions is to determine if the test users understand the plots and can
interpret them. Results show limitations in usability and plot
interpretability, especially in the data import section. We suggest the
following modifications. I) providing conspicuous guides close to the window
related to up-loading a datafile as well as providing error messages that
pop-up when the data set has a wrong format II) providing plot descriptions,
hints to interpret plots, plot titles and appropriate axis labels, and, III)
Numbering tabs to show the flow of procedures in the software.

2
The categories of this paper are: math
6
The categories of this paper are: astro-ph
3
The categories of this paper are: physics
16
The categories of this paper are: stat
27
The categories of this paper are: comp-gas
23
The categories of this paper are: solv-int
0
The categories of this paper are: hep-ph
19
The categories of this paper are: eess
32
The categories of this paper are: atom-ph
30
The categories of this paper are: q-alg
20
The categories of this paper are: acc-phys
37
The categories of this paper are: supr-con
9
The categories of this paper are: nlin
7
The categories of this paper are: hep-th
8
The categories of this paper are: hep-ex
17
The categories of this paper are: q-fin