Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: KEGGexpressionMapper allows for analysis of pathways over multiple
  conditions by integrating transcriptomics and proteomics measurements   Motivation: In transcriptomic and proteomics-based studies, the abundance of
genes is often compared to functional pathways such as the Kyoto Encyclopaedia
at Genes and Genomes (KEGG) to identify active metabolic processes. Even though
a plethora of tools allow to analyze and to compare omics data in respect to
KEGG pathways, the analysis of multiple conditions is often limited to only a
defined set of conditions. Furthermore, for transcriptomic datasets, it is
crucial to compare the entire set of pathways in order to obtain a global
overview of the species' metabolic functions. Results: Here, we present the
tool KEGGexpressionMapper, a module, that is implemented in the programming
language R. The module allows to highlight the expression of transcriptomic or
proteomic measurements in various conditions on pathways and incorporates
methods to analyze gene enrichment analyses and expression clustering in time
series data. KEGGexpressionMapper supports time series data from transcriptomic
or proteomics measurements from different individuals. As the tool is
implemented in the scripting language R, it can be integrated into existing
analysis pipelines to obtain a global overview of the dataset. The R package
can be downloaded from https://github.com/nthomasCUBE/KEGGexpressionmapper.

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The categories of this paper are: plasm-ph
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The categories of this paper are: nlin
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The categories of this paper are: atom-ph
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The categories of this paper are: patt-sol
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The categories of this paper are: cs
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The categories of this paper are: supr-con
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The categories of this paper are: q-fin
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The categories of this paper are: hep-lat
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The categories of this paper are: ao-sci
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The categories of this paper are: chao-dyn
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The categories of this paper are: chem-ph
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The categories of this paper are: cmp-lg
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The categories of this paper are: solv-int
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The categories of this paper are: quant-ph
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The categories of this paper are: hep-ph
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The categories of this paper are: cond-mat