Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: On The Closest String and Substring Problems   The problem of finding a center string that is `close' to every given string
arises and has many applications in computational biology and coding theory.
This problem has two versions: the Closest String problem and the Closest
Substring problem. Assume that we are given a set of strings ${\cal S}=\{s_1,
s_2, ..., s_n\}$ of strings, say, each of length $m$. The Closest String
problem asks for the smallest $d$ and a string $s$ of length $m$ which is
within Hamming distance $d$ to each $s_i\in {\cal S}$. This problem comes from
coding theory when we are looking for a code not too far away from a given set
of codes. The problem is NP-hard. Berman et al give a polynomial time algorithm
for constant $d$. For super-logarithmic $d$, Ben-Dor et al give an efficient
approximation algorithm using linear program relaxation technique. The best
polynomial time approximation has ratio 4/3 for all $d$ given by Lanctot et al
and Gasieniec et al. The Closest Substring problem looks for a string $t$ which
is within Hamming distance $d$ away from a substring of each $s_i$. This
problem only has a $2- \frac{2}{2|\Sigma|+1}$ approximation algorithm
previously Lanctot et al and is much more elusive than the Closest String
problem, but it has many applications in finding conserved regions, genetic
drug target identification, and genetic probes in molecular biology. Whether
there are efficient approximation algorithms for both problems are major open
questions in this area. We present two polynomial time approxmation algorithms
with approximation ratio $1+ \epsilon$ for any small $\epsilon$ to settle both
questions.

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The categories of this paper are: astro-ph
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The categories of this paper are: funct-an
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The categories of this paper are: acc-phys
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The categories of this paper are: plasm-ph
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The categories of this paper are: gr-qc
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The categories of this paper are: math-ph
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The categories of this paper are: stat
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The categories of this paper are: math
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The categories of this paper are: adap-org
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The categories of this paper are: quant-ph
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The categories of this paper are: cmp-lg
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The categories of this paper are: atom-ph
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The categories of this paper are: q-fin
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The categories of this paper are: chao-dyn
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The categories of this paper are: ao-sci
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The categories of this paper are: hep-th