Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: Haplotype Assembly: An Information Theoretic View   This paper studies the haplotype assembly problem from an information
theoretic perspective. A haplotype is a sequence of nucleotide bases on a
chromosome, often conveniently represented by a binary string, that differ from
the bases in the corresponding positions on the other chromosome in a
homologous pair. Information about the order of bases in a genome is readily
inferred using short reads provided by high-throughput DNA sequencing
technologies. In this paper, the recovery of the target pair of haplotype
sequences using short reads is rephrased as a joint source-channel coding
problem. Two messages, representing haplotypes and chromosome memberships of
reads, are encoded and transmitted over a channel with erasures and errors,
where the channel model reflects salient features of high-throughput
sequencing. The focus of this paper is on the required number of reads for
reliable haplotype reconstruction, and both the necessary and sufficient
conditions are presented with order-wise optimal bounds.

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The categories of this paper are: nucl-ex
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The categories of this paper are: acc-phys
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The categories of this paper are: eess
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The categories of this paper are: q-alg
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The categories of this paper are: patt-sol
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The categories of this paper are: atom-ph
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The categories of this paper are: cond-mat
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The categories of this paper are: gr-qc
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The categories of this paper are: nlin
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The categories of this paper are: adap-org
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The categories of this paper are: q-fin
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The categories of this paper are: mtrl-th
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The categories of this paper are: q-bio
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The categories of this paper are: alg-geom
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The categories of this paper are: math-ph
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The categories of this paper are: hep-lat