Instruct: Identify the main category of Biorxiv papers based on the titles and abstracts
Query: FAIRSCAPE: A Framework for FAIR and Reproducible Biomedical Analytics Results of computational analyses require transparent disclosure of their supporting resources, while the analyses themselves often can be very large scale and involve multiple processing steps separated in time. Evidence for the correctness of any analysis should include not only a textual description, but also a formal record of the computations which produced the result, including accessible data and software with runtime parameters, environment, and personnel involved.

This article describes FAIRSCAPE, a reusable computational framework, enabling simplified access to modern scalable cloud-based components. FAIRSCAPE fully implements the FAIR data principles and extends them to provide fully FAIR Evidence, including machine-interpretable provenance of datasets, software and computations, as metadata for all computed results.

The FAIRSCAPE microservices framework creates a complete Evidence Graph for every computational result, including persistent identifiers with metadata, resolvable to the software, computations, and datasets used in the computation; and stores a URI to the root of the graph in the results metadata. An ontology for Evidence Graphs, EVI (https://w3id.org/EVI), supports inferential reasoning over the evidence.

FAIRSCAPE can run nested or disjoint workflows and preserves provenance across them. It can run Apache Spark jobs, scripts, workflows, or user-supplied containers. All objects are assigned persistent IDs, including software. All results are annotated with FAIR metadata using the evidence graph model for access, validation, reproducibility, and re-use of archived data and software.
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The categories of this paper are: toxicology
2
The categories of this paper are: biology
12
The categories of this paper are: behavior
25
The categories of this paper are: bioengineering
32
The categories of this paper are: zoology
9
The categories of this paper are: synthetic
22
The categories of this paper are: physiology
3
The categories of this paper are: evolutionary
15
The categories of this paper are: developmental
8
The categories of this paper are: genomics
10
The categories of this paper are: and
11
The categories of this paper are: cognition
30
The categories of this paper are: scientific
23
The categories of this paper are: immunology
27
The categories of this paper are: pathology
7
The categories of this paper are: ecology