Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: An automated workflow for parallel processing of large multiview SPIM
  recordings   Multiview light sheet fluorescence microscopy (LSFM) allows to image
developing organisms in 3D at unprecedented temporal resolution over long
periods of time. The resulting massive amounts of raw image data requires
extensive processing interactively via dedicated graphical user interface (GUI)
applications. The consecutive processing steps can be easily automated and the
individual time points can be processed independently, which lends itself to
trivial parallelization on a high performance cluster (HPC). Here we introduce
an automated workflow for processing large multiview, multi-channel,
multi-illumination time-lapse LSFM data on a single workstation or in parallel
on a HPC. The pipeline relies on snakemake to resolve dependencies among
consecutive processing steps and can be easily adapted to any cluster
environment for processing LSFM data in a fraction of the time required to
collect it.

17
The categories of this paper are: q-fin
18
The categories of this paper are: econ
36
The categories of this paper are: cmp-lg
31
The categories of this paper are: ao-sci
4
The categories of this paper are: cond-mat
5
The categories of this paper are: gr-qc
34
The categories of this paper are: chem-ph
22
The categories of this paper are: chao-dyn
35
The categories of this paper are: mtrl-th
15
The categories of this paper are: nucl-ex
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The categories of this paper are: stat
9
The categories of this paper are: nlin
30
The categories of this paper are: q-alg
33
The categories of this paper are: plasm-ph
6
The categories of this paper are: astro-ph
23
The categories of this paper are: solv-int