Instruct: Identify the main category of Biorxiv papers based on the titles and abstracts
Query: Deploying genomics workflows on high performance computing (HPC) platforms: storage, memory, and compute considerations Next Generation Sequencing (NGS) workloads largely consist of pipelines of tasks with heterogeneous compute, memory, and storage requirements. Identifying the optimal system configuration has historically required expertise in both system architecture and bioinformatics. This paper outlines infrastructure recommendations for one commonly used genomics workload based on extensive benchmarking and profiling, along with recommendations on how to tune genomics workflows for high performance computing (HPC) infrastructure. The demonstrated methodology and learnings can be extended for other genomics workloads and for other infrastructures such as the cloud.
23
The categories of this paper are: immunology
18
The categories of this paper are: systems
3
The categories of this paper are: evolutionary
12
The categories of this paper are: behavior
13
The categories of this paper are: animal
29
The categories of this paper are: education
16
The categories of this paper are: microbiology
28
The categories of this paper are: communication
6
The categories of this paper are: plant
10
The categories of this paper are: and
26
The categories of this paper are: biochemistry
21
The categories of this paper are: toxicology
2
The categories of this paper are: biology
30
The categories of this paper are: scientific
0
The categories of this paper are: genetics
19
The categories of this paper are: epidemiology