Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: Bayesian co-estimation of selfing rate and locus-specific mutation rates
  for a partially selfing population   We present a Bayesian method for characterizing the mating system of
populations reproducing through a mixture of self-fertilization and random
outcrossing. Our method uses patterns of genetic variation across the genome as
a basis for inference about pure hermaphroditism, androdioecy, and gynodioecy.
We extend the standard coalescence model to accommodate these mating systems,
accounting explicitly for multilocus identity disequilibrium, inbreeding
depression, and variation in fertility among mating types. We incorporate the
Ewens Sampling Formula (ESF) under the infinite-alleles model of mutation to
obtain a novel expression for the likelihood of mating system parameters. Our
Markov chain Monte Carlo (MCMC) algorithm assigns locus-specific mutation
rates, drawn from a common mutation rate distribution that is itself estimated
from the data using a Dirichlet Process Prior (DPP) model. Among the parameters
jointly inferred are the population-wide rate of self-fertilization,
locus-specific mutation rates, and the number of generations since the most
recent outcrossing event for each sampled individual.

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The categories of this paper are: hep-th
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The categories of this paper are: math-ph
28
The categories of this paper are: alg-geom
4
The categories of this paper are: cond-mat
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The categories of this paper are: quant-ph
37
The categories of this paper are: supr-con
16
The categories of this paper are: stat
31
The categories of this paper are: ao-sci
34
The categories of this paper are: chem-ph
11
The categories of this paper are: hep-lat
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The categories of this paper are: dg-ga
15
The categories of this paper are: nucl-ex
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The categories of this paper are: funct-an
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The categories of this paper are: q-alg
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The categories of this paper are: patt-sol
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The categories of this paper are: nlin