Instruct: Identify the main category of Biorxiv papers based on the titles and abstracts
Query: CellDepot: A unified repository for scRNA-seq data and visual exploration CellDepot serves as an integrated web application to assist users in exploring single-cell RNA-seq (scRNA-seq) datasets and comparing the datasets among various studies through a user-friendly interface with advanced visualization and analytical tools. To begin with, it provides an efficient data management system that users can upload single cell datasets and query the database by multiple attributes such as species and cell types. In addition, the advanced query function incorporated in MySQL database system and its conditional filtering, allows users to quickly query and compare the expression of gene(s) across the datasets of interest. Moreover, by embedding the cellxgene VIP tool, CellDepot enables fast exploration of individual dataset in the manner of interactivity and scalability to gain more refined insights such as cell composition, gene expression profiles, and differentially expressed genes among cell types. In summary, the web portal allows large scale single cell data sharing, analysis and visualization for supporting decision-making, and encouraging scientists to contribute to the single-cell community in a tractable and collaborative way. Finally, CellDepot is released as open-source software to motivate crowd contribution, broad adoption, and local deployment for private data.
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The categories of this paper are: pathology
4
The categories of this paper are: neuroscience
15
The categories of this paper are: developmental
24
The categories of this paper are: cancer
9
The categories of this paper are: synthetic
13
The categories of this paper are: animal
3
The categories of this paper are: evolutionary
11
The categories of this paper are: cognition
12
The categories of this paper are: behavior
21
The categories of this paper are: toxicology
2
The categories of this paper are: biology
28
The categories of this paper are: communication
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The categories of this paper are: plant
5
The categories of this paper are: cell
14
The categories of this paper are: biophysics
29
The categories of this paper are: education