Instruct: Identify the main category of Biorxiv papers based on the titles and abstracts
Query: Quantifying defensive behavior and threat response through integrated headstage accelerometry BackgroundDefensive and threat-related behaviors are common targets of investigation, because they model aspects of human mental illness. These behaviors are typically quantified by video recording and post hoc analysis. Those quantifications can be laborious and/or computationally intensive.

Depending on the analysis method, the resulting measurements can be noisy or inaccurate. Other defensive behaviors, such as suppression of operant reward seeking, require extensive animal pre-training.

New MethodWe demonstrate a method for quantifying defensive behavior (immobility or freezing) by 3-axis accelerometry integrated with an electrophysiology headstage. We tested multiple pre-processing and smoothing methods, and correlated them against two common methods for quantification: freezing as derived from standard video analysis, and suppression of operantly shaped bar pressing. We assessed these three methods ability to track defensive behavior during a standard threat conditioning and extinction paradigm.

ResultsThe best approach to tracking defensive behavior from accelerometry was Gaussian filter smoothing of the first derivative (change score or jerk). Behavior scores from this method reproduced canonical conditioning and extinction curves at the group level. At the individual level, timepoint-to-timepoint correlations between accelerometry, video, and bar press metrics were statistically significant but modest (largest r=0.53, between accelerometry and bar press).

Comparison with existing methodsThe integration with standard electrophysiology systems and relatively lightweight signal processing may make accelerometry particularly well suited to detect behavior in resource-constrained or real-time applications. At the same time, there were modest cross-correlations between all three methods for quantifying defensive behavior.

ConclusionsAccelerometry analysis allows researchers already using electrophysiology to assess defensive behaviors without the need for additional behavioral measures or video. The similarities in behavioral tracking and modest correlations between each metric suggest that each measures a distinct aspect of defensive behavior. Accelerometry is a viable alternative to current defensive measurements, and its non-overlap with other metrics may allow a more sophisticated dissection of threat responses in future experiments.

HighlightsO_LIA novel method to assess defensive behavior and immobility based on headstage accelerometry
C_LIO_LICompatible with readily available, open-source neurophysiology systems
C_LIO_LIProvides behavioral insights without the need for video analysis software and with relatively minimal processing, suitable for rapid closed-loop experiments
C_LI
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The categories of this paper are: epidemiology
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The categories of this paper are: biophysics
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The categories of this paper are: pathology
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The categories of this paper are: scientific
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The categories of this paper are: cell
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The categories of this paper are: molecular
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The categories of this paper are: synthetic
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The categories of this paper are: cancer
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The categories of this paper are: bioengineering
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The categories of this paper are: bioinformatics
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The categories of this paper are: developmental
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The categories of this paper are: toxicology
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The categories of this paper are: ecology
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The categories of this paper are: plant
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The categories of this paper are: biology
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The categories of this paper are: systems