Instruct: Identify the main and secondary category of Arxiv papers based on the titles and abstracts
Query: Co-evolution is Incompatible with the Markov Assumption in Phylogenetics   Markov models are extensively used in the analysis of molecular evolution. A
recent line of research suggests that pairs of proteins with functional and
physical interactions co-evolve with each other. Here, by analyzing hundreds of
orthologous sets of three fungi and their co-evolutionary relations, we
demonstrate that co-evolutionary assumption may violate the Markov assumption.
Our results encourage developing alternative probabilistic models for the cases
of extreme co-evolution.

15
The categories of this paper are: nucl-ex
22
The categories of this paper are: chao-dyn
20
The categories of this paper are: acc-phys
34
The categories of this paper are: chem-ph
5
The categories of this paper are: gr-qc
24
The categories of this paper are: dg-ga
0
The categories of this paper are: hep-ph
35
The categories of this paper are: mtrl-th
14
The categories of this paper are: math-ph
21
The categories of this paper are: adap-org
28
The categories of this paper are: alg-geom
16
The categories of this paper are: stat
9
The categories of this paper are: nlin
2
The categories of this paper are: math
11
The categories of this paper are: hep-lat
6
The categories of this paper are: astro-ph