Add the information from ESS to Entity info.
@param ess
@param eId
@param c
345359
private void addInfoFromESS(EntitySrcSyn ess, int eId, EntityInfo c) {
		c.setOrganismCommon(ess.getOrganism_common_name());
		c.setOrganismScientific(ess.getOrganism_scientific());
		c.setOrganismTaxId(ess.getNcbi_taxonomy_id());

	}
721272
public void addEdge(DiEdge e) {
        if (edges.add(e)) {
            int s = e.get1();
            int t = e.get2();
            addNode(s);
            addNode(t);
            predecessors.get(t).add(s);
            successors.get(s).add(t);
        }
    }
1333067
private void connectOccs(final CLClause c) {
        assert this.dense;
        for (int i = 0; i < c.lits().size(); i++) { addOcc(c.lits().get(i), c); }
    }
765013
@Override
  public boolean addAll(Collection<? extends Character> c) {
    ensureCapacity(size + c.size());
    for (char e : c) {
      elements[size++] = e;
    }
    return c.size() > 0;
  }
547163
public synchronized boolean add(E e) {
        modCount++;
        ensureCapacityHelper(elementCount + 1);
        elementData[elementCount++] = e;
        return true;
    }
162060
public void externalEntityDecl(
        String name,
        String publicId,
        String systemId)
        throws SAXException
    {
        if (m_firstTagNotEmitted)
        {
            flush();
        }
        m_handler.externalEntityDecl(name, publicId, systemId);
    }
855226
public void addLast(E e) {
        if (e == null)
            throw new NullPointerException();
        elements[tail] = e;
        if ( (tail = (tail + 1) & (elements.length - 1)) == head)
            doubleCapacity();
    }
1359443
public boolean add(final OIdentifiable e) {
		if (e.getIdentity().isNew()) {
			final ORecord<?> record = e.getRecord();

			// ADD IN TEMP LIST
			if (newItems == null)
				newItems = new IdentityHashMap<ORecord<?>, Object>();
			else if (newItems.containsKey(record))
				return false;
			newItems.put(record, NEWMAP_VALUE);
			setDirty();
			return true;
		} else if (OGlobalConfiguration.LAZYSET_WORK_ON_STREAM.getValueAsBoolean() && getStreamedContent() != null) {
			// FAST INSERT
			final String ridString = e.getIdentity().toString();
			final StringBuilder buffer = getStreamedContent();
			if (buffer.indexOf(ridString) < 0) {
				if (buffer.length() > 0)
					buffer.append(',');
				e.getIdentity().toString(buffer);
				setDirty();
				return true;
			}
			return false;
		} else {
			final int pos = indexOf(e);

			if (pos < 0) {
				// FOUND
				delegate.add(pos * -1 - 1, e);
				return true;
			}
			return false;
		}
	}
1205968
public void setEntityTypes(java.util.Collection<EntityTypesListItem> entityTypes) {
        if (entityTypes == null) {
            this.entityTypes = null;
            return;
        }

        this.entityTypes = new java.util.ArrayList<EntityTypesListItem>(entityTypes);
    }
881454
public void addEntityId(long entityId)
    {
        if(this.entityIds == null)
            this.entityIds = new ArrayList<Long>();
        this.entityIds.add(entityId);
    }
1098738
public void setStructureId(String structureId) {

        try {
            m_resourceBuilder.setStructureId(new CmsUUID(structureId));
            m_hasStructureId = true;

        } catch (Throwable e) {
            setThrowable(e);
        }

    }
111462
public void addFirst(E e) {
        if (e == null)
            throw new NullPointerException();
        elements[head = (head - 1) & (elements.length - 1)] = e;
        if (head == tail)
            doubleCapacity();
    }
295880
public void setEntityId(String v) {
    if (DictTerm_Type.featOkTst && ((DictTerm_Type)jcasType).casFeat_entityId == null)
      jcasType.jcas.throwFeatMissing("entityId", "ch.epfl.bbp.uima.types.DictTerm");
    jcasType.ll_cas.ll_setStringValue(addr, ((DictTerm_Type)jcasType).casFeatCode_entityId, v);}
246130
public void setIdValue(CmsObject cms, CmsUUID id) {

        CmsRelationType type = getRelationType(getPath());
        CmsLink link = new CmsLink(TYPE_VFS_LINK, type, id, "@", true);
        // link management check
        link.checkConsistency(cms);
        // update xml node
        CmsLinkUpdateUtil.updateXmlForVfsFile(link, m_element.addElement(CmsXmlPage.NODE_LINK));

    }
1028081
public CmsEntity createDeepCopy(String entityId) {

        CmsEntity result = new CmsEntity(entityId, getTypeName());
        for (CmsEntityAttribute attribute : getAttributes()) {
            if (attribute.isSimpleValue()) {
                List<String> values = attribute.getSimpleValues();
                for (String value : values) {
                    result.addAttributeValue(attribute.getAttributeName(), value);
                }
            } else {
                List<CmsEntity> values = attribute.getComplexValues();
                for (CmsEntity value : values) {
                    result.addAttributeValue(attribute.getAttributeName(), value.createDeepCopy(null));
                }
            }
        }
        return result;
    }
1266784
public void add(Collection<AlertCondition> conditions)
    {
        for(AlertCondition condition : conditions)
            this.conditions.put(condition.getId(), condition);
    }
773863
public void add(Collection<Entity> entities)
    {
        for(Entity entity : entities)
            this.entities.put(entity.getId(), entity);
    }