{
    "file_diffs": [
        {
            "old_file_content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"CLI entrypoint for special remotes\"\"\"\n\n__docformat__ = 'restructuredtext'\n\n\nimport argparse\n\nfrom datalad.cli.parser import (\n    parser_add_common_opt,\n    parser_add_version_opt,\n)\nfrom datalad.cli.utils import setup_exceptionhook\nfrom datalad.ui import ui\n\n\ndef setup_parser(remote_name, description):\n    # setup cmdline args parser\n    # main parser\n    parser = argparse.ArgumentParser(\n        description= \\\n        f\"git-annex-remote-{remote_name} is a git-annex custom special \" \\\n        f\"remote to {description}\",\n        epilog='\"DataLad\\'s git-annex very special remote\"',\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n        add_help=True,\n    )\n    # common options\n    parser_add_common_opt(parser, 'log_level')\n    parser_add_version_opt(parser, 'datalad', include_name=True)\n    if __debug__:\n        parser.add_argument(\n            '--dbg', action='store_true', dest='common_debug',\n            help=\"Catch exceptions and fall into debugger upon exception\")\n    return parser\n\n\ndef _main(args, cls):\n    \"\"\"Unprotected portion\"\"\"\n    assert(cls is not None)\n    from annexremote import Master\n    master = Master()\n    remote = cls(master)\n    master.LinkRemote(remote)\n    master.Listen()\n    # cleanup\n    if hasattr(remote, 'stop'):\n        remote.stop()\n\n\ndef main(args=None, cls=None, remote_name=None, description=None):\n    import sys\n    parser = setup_parser(remote_name, description)\n    # parse cmd args\n    args = parser.parse_args(args)\n\n    # stdin/stdout will be used for interactions with annex\n    ui.set_backend('annex')\n\n    if args.common_debug:\n        # So we could see/stop clearly at the point of failure\n        setup_exceptionhook()\n        _main(args, cls)\n    else:\n        # Otherwise - guard and only log the summary. Postmortem is not\n        # as convenient if being caught in this ultimate except\n        try:\n            _main(args, cls)\n        except Exception as exc:\n            # `SpecialRemote` classes are supposed to catch everything and\n            # turn it into a `RemoteError` resulting in an ERROR message to\n            # annex. If we end up here, something went wrong outside of the\n            # `master.Listen()` call in `_main`.\n            # In any case, exiting the special remote process should be\n            # accompanied by such an ERROR message to annex rather than a log\n            # message.\n            print(\"ERROR %s (%s)\" % (str(exc), exc.__class__.__name__))\n            sys.exit(1)\n",
            "new_file_content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"CLI entrypoint for special remotes\"\"\"\n\n__docformat__ = 'restructuredtext'\n\n\nimport argparse\n\nfrom datalad.cli.parser import (\n    parser_add_common_opt,\n    parser_add_version_opt,\n)\nfrom datalad.cli.utils import setup_exceptionhook\nfrom datalad.ui import ui\n\nimport logging\nlgr = logging.getLogger('datalad.customremotes')\n\n\ndef setup_parser(remote_name, description):\n    # setup cmdline args parser\n    # main parser\n    parser = argparse.ArgumentParser(\n        description= \\\n        f\"git-annex-remote-{remote_name} is a git-annex custom special \" \\\n        f\"remote to {description}\",\n        epilog='\"DataLad\\'s git-annex very special remote\"',\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n        add_help=True,\n    )\n    # common options\n    parser_add_common_opt(parser, 'log_level')\n    parser_add_version_opt(parser, 'datalad', include_name=True)\n    if __debug__:\n        parser.add_argument(\n            '--dbg', action='store_true', dest='common_debug',\n            help=\"Catch exceptions and fall into debugger upon exception\")\n    return parser\n\n\ndef _main(args, cls):\n    \"\"\"Unprotected portion\"\"\"\n    assert(cls is not None)\n    from annexremote import Master\n    master = Master()\n    remote = cls(master)\n    master.LinkRemote(remote)\n    master.Listen()\n    # cleanup\n    if hasattr(remote, 'stop'):\n        remote.stop()\n\n\ndef main(args=None, cls=None, remote_name=None, description=None):\n    import sys\n    parser = setup_parser(remote_name, description)\n    # parse cmd args\n    args = parser.parse_args(args)\n\n    # stdin/stdout will be used for interactions with annex\n    ui.set_backend('annex')\n\n    if args.common_debug:\n        # So we could see/stop clearly at the point of failure\n        setup_exceptionhook()\n        _main(args, cls)\n    else:\n        # Otherwise - guard and only log the summary. Postmortem is not\n        # as convenient if being caught in this ultimate except\n        try:\n            _main(args, cls)\n        except Exception as exc:\n            lgr.debug('%s (%s) - passing ERROR to git-annex and exiting',\n                      str(exc), exc.__class__.__name__)\n            # `SpecialRemote` classes are supposed to catch everything and\n            # turn it into a `RemoteError` resulting in an ERROR message to\n            # annex. If we end up here, something went wrong outside of the\n            # `master.Listen()` call in `_main`.\n            # In any case, exiting the special remote process should be\n            # accompanied by such an ERROR message to annex rather than a log\n            # message.\n            print(\"ERROR %s (%s)\" % (str(exc), exc.__class__.__name__))\n            sys.exit(1)\n",
            "header": {
                "file": {
                    "path": "datalad/customremotes/main.py"
                },
                "misc_line": null
            },
            "index_line": {
                "old_commit_hash": "bea44867d",
                "new_commit_hash": "a2931ff04",
                "mode": "100644"
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            "hunks": [
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                        "old_range": {
                            "start": 20,
                            "length": 6
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                        "new_range": {
                            "start": 20,
                            "length": 9
                        },
                        "section": "from datalad.cli.parser import ("
                    },
                    "line_group": {
                        "all_lines": [
                            {
                                "content": "from datalad.cli.utils import setup_exceptionhook",
                                "type": "context"
                            },
                            {
                                "content": "from datalad.ui import ui",
                                "type": "context"
                            },
                            {
                                "content": "",
                                "type": "context"
                            },
                            {
                                "content": "import logging",
                                "type": "added"
                            },
                            {
                                "content": "lgr = logging.getLogger('datalad.customremotes')",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "context"
                            },
                            {
                                "content": "def setup_parser(remote_name, description):",
                                "type": "context"
                            },
                            {
                                "content": "    # setup cmdline args parser",
                                "type": "context"
                            }
                        ]
                    },
                    "modified_entities": [],
                    "added_entities": [
                        {
                            "file_name": "datalad/customremotes/main.py",
                            "type": "statement",
                            "name": "",
                            "content": "lgr = logging.getLogger('datalad.customremotes')",
                            "ast_type_str": "Assign",
                            "start_lineno": 24,
                            "end_lineno": 24,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/main.py",
                            "type": "import",
                            "name": "logging",
                            "content": "import logging",
                            "ast_type_str": "Import",
                            "start_lineno": 23,
                            "end_lineno": 23,
                            "parent": null
                        }
                    ],
                    "deleted_entities": []
                },
                {
                    "descriptor": {
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                            "start": 74,
                            "length": 6
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                            "start": 77,
                            "length": 8
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                        "section": "def main(args=None, cls=None, remote_name=None, description=None):"
                    },
                    "line_group": {
                        "all_lines": [
                            {
                                "content": "        try:",
                                "type": "context"
                            },
                            {
                                "content": "            _main(args, cls)",
                                "type": "context"
                            },
                            {
                                "content": "        except Exception as exc:",
                                "type": "context"
                            },
                            {
                                "content": "            lgr.debug('%s (%s) - passing ERROR to git-annex and exiting',",
                                "type": "added"
                            },
                            {
                                "content": "                      str(exc), exc.__class__.__name__)",
                                "type": "added"
                            },
                            {
                                "content": "            # `SpecialRemote` classes are supposed to catch everything and",
                                "type": "context"
                            },
                            {
                                "content": "            # turn it into a `RemoteError` resulting in an ERROR message to",
                                "type": "context"
                            },
                            {
                                "content": "            # annex. If we end up here, something went wrong outside of the",
                                "type": "context"
                            }
                        ]
                    },
                    "modified_entities": [
                        {
                            "file_name": "datalad/customremotes/main.py",
                            "type": "function",
                            "name": "main",
                            "content": "def main(args=None, cls=None, remote_name=None, description=None):\n    import sys\n    parser = setup_parser(remote_name, description)\n    # parse cmd args\n    args = parser.parse_args(args)\n\n    # stdin/stdout will be used for interactions with annex\n    ui.set_backend('annex')\n\n    if args.common_debug:\n        # So we could see/stop clearly at the point of failure\n        setup_exceptionhook()\n        _main(args, cls)\n    else:\n        # Otherwise - guard and only log the summary. Postmortem is not\n        # as convenient if being caught in this ultimate except\n        try:\n            _main(args, cls)\n        except Exception as exc:\n            lgr.debug('%s (%s) - passing ERROR to git-annex and exiting',\n                      str(exc), exc.__class__.__name__)\n            # `SpecialRemote` classes are supposed to catch everything and\n            # turn it into a `RemoteError` resulting in an ERROR message to\n            # annex. If we end up here, something went wrong outside of the\n            # `master.Listen()` call in `_main`.\n            # In any case, exiting the special remote process should be\n            # accompanied by such an ERROR message to annex rather than a log\n            # message.\n            print(\"ERROR %s (%s)\" % (str(exc), exc.__class__.__name__))\n            sys.exit(1)",
                            "ast_type_str": "FunctionDef",
                            "start_lineno": 61,
                            "end_lineno": 90,
                            "parent": null
                        }
                    ],
                    "added_entities": [],
                    "deleted_entities": []
                }
            ]
        },
        {
            "old_file_content": "",
            "new_file_content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 et:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"Tests for the \"main\" driver of the special remotes\"\"\"\n\nimport logging\nimport os\n\nfrom ..main import main\n\nfrom ..base import AnnexCustomRemote\n\nfrom datalad.tests.utils_pytest import (\n    swallow_logs,\n    swallow_outputs,\n)\n\nimport pytest\n\n\ndef test_erroring_out():\n    class TooAbstract(AnnexCustomRemote):\n        pass\n\n    with swallow_logs(new_level=logging.DEBUG) as cml, \\\n        swallow_outputs() as cmo:\n        with pytest.raises(SystemExit) as cme:\n            main(args=[], cls=TooAbstract)\n        assert cme.value.code == 1\n        assert 'passing ERROR to git-annex' in cml.out\n        # verify basic correct formatting of string to git-annex\n        assert cmo.out.startswith('ERROR ')\n        assert os.linesep not in cmo.out.rstrip()\n        assert cmo.out.endswith('\\n')  # This is the case even on Windows.\n",
            "header": {
                "file": {
                    "path": "datalad/customremotes/tests/test_main.py"
                },
                "misc_line": "new file mode 100644"
            },
            "index_line": {
                "old_commit_hash": "000000000",
                "new_commit_hash": "f872cdd2a",
                "mode": ""
            },
            "is_binary_file": false,
            "binary_line": null,
            "minus_file": {
                "path": "/dev/null"
            },
            "plus_file": {
                "path": "b/datalad/customremotes/tests/test_main.py"
            },
            "hunks": [
                {
                    "descriptor": {
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                            "start": 0,
                            "length": 0
                        },
                        "new_range": {
                            "start": 1,
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                        },
                        "section": ""
                    },
                    "line_group": {
                        "all_lines": [
                            {
                                "content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-",
                                "type": "added"
                            },
                            {
                                "content": "# ex: set sts=4 ts=4 sw=4 et:",
                                "type": "added"
                            },
                            {
                                "content": "# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##",
                                "type": "added"
                            },
                            {
                                "content": "#",
                                "type": "added"
                            },
                            {
                                "content": "#   See COPYING file distributed along with the datalad package for the",
                                "type": "added"
                            },
                            {
                                "content": "#   copyright and license terms.",
                                "type": "added"
                            },
                            {
                                "content": "#",
                                "type": "added"
                            },
                            {
                                "content": "# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##",
                                "type": "added"
                            },
                            {
                                "content": "\"\"\"Tests for the \"main\" driver of the special remotes\"\"\"",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "import logging",
                                "type": "added"
                            },
                            {
                                "content": "import os",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "from ..main import main",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "from ..base import AnnexCustomRemote",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "from datalad.tests.utils_pytest import (",
                                "type": "added"
                            },
                            {
                                "content": "    swallow_logs,",
                                "type": "added"
                            },
                            {
                                "content": "    swallow_outputs,",
                                "type": "added"
                            },
                            {
                                "content": ")",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "import pytest",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "def test_erroring_out():",
                                "type": "added"
                            },
                            {
                                "content": "    class TooAbstract(AnnexCustomRemote):",
                                "type": "added"
                            },
                            {
                                "content": "        pass",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "added"
                            },
                            {
                                "content": "    with swallow_logs(new_level=logging.DEBUG) as cml, \\",
                                "type": "added"
                            },
                            {
                                "content": "        swallow_outputs() as cmo:",
                                "type": "added"
                            },
                            {
                                "content": "        with pytest.raises(SystemExit) as cme:",
                                "type": "added"
                            },
                            {
                                "content": "            main(args=[], cls=TooAbstract)",
                                "type": "added"
                            },
                            {
                                "content": "        assert cme.value.code == 1",
                                "type": "added"
                            },
                            {
                                "content": "        assert 'passing ERROR to git-annex' in cml.out",
                                "type": "added"
                            },
                            {
                                "content": "        # verify basic correct formatting of string to git-annex",
                                "type": "added"
                            },
                            {
                                "content": "        assert cmo.out.startswith('ERROR ')",
                                "type": "added"
                            },
                            {
                                "content": "        assert os.linesep not in cmo.out.rstrip()",
                                "type": "added"
                            },
                            {
                                "content": "        assert cmo.out.endswith('\\n')  # This is the case even on Windows.",
                                "type": "added"
                            },
                            {
                                "content": "",
                                "type": "context"
                            }
                        ]
                    },
                    "modified_entities": [],
                    "added_entities": [
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "import",
                            "name": "pytest",
                            "content": "import pytest",
                            "ast_type_str": "Import",
                            "start_lineno": 23,
                            "end_lineno": 23,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "import",
                            "name": "logging",
                            "content": "import logging",
                            "ast_type_str": "Import",
                            "start_lineno": 11,
                            "end_lineno": 11,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "statement",
                            "name": "",
                            "content": "from datalad.tests.utils_pytest import (\n    swallow_logs,\n    swallow_outputs,\n)",
                            "ast_type_str": "ImportFrom",
                            "start_lineno": 18,
                            "end_lineno": 21,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "statement",
                            "name": "",
                            "content": "\"\"\"Tests for the \"main\" driver of the special remotes\"\"\"",
                            "ast_type_str": "Expr",
                            "start_lineno": 9,
                            "end_lineno": 9,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "statement",
                            "name": "",
                            "content": "from ..base import AnnexCustomRemote",
                            "ast_type_str": "ImportFrom",
                            "start_lineno": 16,
                            "end_lineno": 16,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "statement",
                            "name": "",
                            "content": "from ..main import main",
                            "ast_type_str": "ImportFrom",
                            "start_lineno": 14,
                            "end_lineno": 14,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "import",
                            "name": "os",
                            "content": "import os",
                            "ast_type_str": "Import",
                            "start_lineno": 12,
                            "end_lineno": 12,
                            "parent": null
                        },
                        {
                            "file_name": "datalad/customremotes/tests/test_main.py",
                            "type": "function",
                            "name": "test_erroring_out",
                            "content": "def test_erroring_out():\n    class TooAbstract(AnnexCustomRemote):\n        pass\n\n    with swallow_logs(new_level=logging.DEBUG) as cml, \\\n        swallow_outputs() as cmo:\n        with pytest.raises(SystemExit) as cme:\n            main(args=[], cls=TooAbstract)\n        assert cme.value.code == 1\n        assert 'passing ERROR to git-annex' in cml.out\n        # verify basic correct formatting of string to git-annex\n        assert cmo.out.startswith('ERROR ')\n        assert os.linesep not in cmo.out.rstrip()\n        assert cmo.out.endswith('\\n')",
                            "ast_type_str": "FunctionDef",
                            "start_lineno": 26,
                            "end_lineno": 39,
                            "parent": null
                        }
                    ],
                    "deleted_entities": []
                }
            ]
        }
    ],
    "old_commit_hash": "51d72905a93157b03b6d35e1a1f7bc1b6569ace7^",
    "new_commit_hash": "51d72905a93157b03b6d35e1a1f7bc1b6569ace7",
    "commit_message": "ENH(DX,TST): log at DEBUG about encountered error, unit-test that exception handling block",
    "commit_date": "2022-12-13T13:40:02+01:00",
    "metadata": {}
}
{
    "repo_name": "datalad",
    "new_commit_hash": "51d72905a93157b03b6d35e1a1f7bc1b6569ace7",
    "test_file_codes": [
        "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 et:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"Tests for the \"main\" driver of the special remotes\"\"\"\n\nimport logging\nimport os\n\nfrom datalad.customremotes.main import main\n\nfrom datalad.customremotes.base import AnnexCustomRemote\n\nfrom datalad.tests.utils_pytest import (\n    swallow_logs,\n    swallow_outputs,\n)\n\nimport pytest\n\n\ndef test_erroring_out():\n    class TooAbstract(AnnexCustomRemote):\n        pass\n\n    with swallow_logs(new_level=logging.DEBUG) as cml, \\\n        swallow_outputs() as cmo:\n        with pytest.raises(SystemExit) as cme:\n            main(args=[], cls=TooAbstract)\n        assert cme.value.code == 1\n        assert 'passing ERROR to git-annex' in cml.out\n        # verify basic correct formatting of string to git-annex\n        assert cmo.out.startswith('ERROR ')\n        assert os.linesep not in cmo.out.rstrip()\n        assert cmo.out.endswith('\\n')  # This is the case even on Windows.\n",
        "import pytest\nimport tempfile\nimport os\n\n\n@pytest.fixture\ndef path():\n    with tempfile.TemporaryDirectory() as tmpdir:\n        yield tmpdir\n\n\n@pytest.fixture(autouse=True)\ndef setup_git_config():\n    with tempfile.TemporaryDirectory() as home:\n        old_home = os.environ.get(\"HOME\")\n        os.environ[\"HOME\"] = home\n        os.system('git config --global user.name \"DataLad Tester\"')\n        os.system('git config --global user.email \"test@example.com\"')\n        yield\n        if old_home:\n            os.environ[\"HOME\"] = old_home\n"
    ],
    "test_file_names": [
        "test_1.py",
        "conftest.py"
    ],
    "setup_res_code": 0,
    "setup_res_stdout": "Starting Datalad installation attempts...\nVerifying installation...\nDatalad version: 0.17.9+278.g51d72905a\n✅ Installation successful!\nSuccessfully installed Datalad using Python 3.9\n",
    "setup_res_stderr": "Using CPython 3.9.21\nCreating virtual environment at: .venv\nActivate with: source .venv/bin/activate\nResolved 25 packages in 128ms\nInstalled 25 packages in 5.26s\n + coverage==7.6.10\n + docopt==0.6.2\n + exceptiongroup==1.2.2\n + grabbit==0.2.6\n + importlib-resources==6.4.5\n + iniconfig==2.0.0\n + nibabel==5.3.2\n + num2words==0.5.14\n + numpy==2.0.2\n + packaging==24.2\n + pandas==2.2.3\n + patsy==1.0.1\n + pluggy==1.5.0\n + pybids==0.6.5\n + pytest==8.3.4\n + pytest-cov==6.0.0\n + python-dateutil==2.9.0.post0\n + pytz==2024.2\n + scipy==1.13.1\n + setuptools==75.6.0\n + six==1.17.0\n + tomli==2.2.1\n + typing-extensions==4.12.2\n + tzdata==2024.2\n + zipp==3.21.0\nResolved 65 packages in 4.29s\nPrepared 1 package in 3.43s\nInstalled 53 packages in 364ms\n + annexremote==1.6.6\n + argcomplete==3.5.3\n + backports-tarfile==1.2.0\n + beautifulsoup4==4.12.3\n + boto==2.49.0\n + certifi==2024.12.14\n + cffi==1.17.1\n + chardet==4.0.0\n + charset-normalizer==3.4.1\n + citeproc-py==0.6.0\n + cryptography==44.0.0\n + datalad==0.17.9+278.g51d72905a (from file:///home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_51d72905a93157b03b6d35e1a1f7bc1b6569ace7)\n + distro==1.9.0\n + duecredit==0.10.2\n + fasteners==0.19\n + httpretty==1.1.4\n + humanize==4.11.0\n + idna==3.10\n + importlib-metadata==8.5.0\n + iso8601==2.1.0\n + jaraco-classes==3.4.0\n + jaraco-context==6.0.1\n + jaraco-functools==4.1.0\n + jeepney==0.8.0\n + keyring==25.6.0\n + keyrings-alt==5.0.2\n + looseversion==1.3.0\n + lxml==5.3.0\n + more-itertools==10.5.0\n + msgpack==1.1.0\n + multidict==6.1.0\n + mypy==0.991\n + mypy-extensions==1.0.0\n + patool==1.15.0\n + platformdirs==4.3.6\n + propcache==0.2.1\n + pycparser==2.22\n + pyperclip==1.9.0\n + pytest-fail-slow==0.6.0\n + python-gitlab==5.3.0\n + pyyaml==6.0.2\n + requests==2.32.3\n + requests-ftp==0.3.1\n + requests-toolbelt==1.0.0\n + secretstorage==3.3.3\n + soupsieve==2.6\n + tqdm==4.67.1\n + types-python-dateutil==2.9.0.20241206\n + types-requests==2.32.0.20241016\n + urllib3==2.3.0\n + vcrpy==4.3.0\n + wrapt==1.17.0\n + yarl==1.18.3\nResolved 97 packages in 382ms\nInstalled 32 packages in 720ms\n + alabaster==0.7.16\n + asv==0.6.4\n + asv-runner==0.2.1\n + babel==2.16.0\n + build==1.2.2.post1\n + distlib==0.3.9\n + docutils==0.21.2\n + execnet==2.1.1\n + filelock==3.16.1\n + gprof2dot==2024.6.6\n + imagesize==1.4.1\n + jinja2==3.1.5\n + json5==0.10.0\n + markupsafe==3.0.2\n + psutil==6.1.1\n + pygments==2.18.0\n + pympler==1.1\n + pypandoc==1.14\n + pyproject-hooks==1.2.0\n + pytest-xdist==3.6.1\n + snowballstemmer==2.2.0\n + sphinx==7.4.7\n + sphinx-rtd-theme==3.0.2\n + sphinxcontrib-applehelp==2.0.0\n + sphinxcontrib-devhelp==2.0.0\n + sphinxcontrib-htmlhelp==2.1.0\n + sphinxcontrib-jquery==4.1\n + sphinxcontrib-jsmath==1.0.1\n + sphinxcontrib-qthelp==2.0.0\n + sphinxcontrib-serializinghtml==2.0.0\n + tabulate==0.9.0\n + virtualenv==20.28.0\n",
    "new_commit_res_code": 0,
    "new_commit_res_stdout": "============================= test session starts ==============================\nplatform linux -- Python 3.9.21, pytest-8.3.4, pluggy-1.5.0\nrootdir: /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_51d72905a93157b03b6d35e1a1f7bc1b6569ace7\nconfigfile: tox.ini\nplugins: fail-slow-0.6.0, xdist-3.6.1, cov-6.0.0\ncollected 1 item\n\nr2e_tests/test_1.py .                                                    [100%]\n\n==================================== PASSES ====================================\n______________________________ test_erroring_out _______________________________\n------------------------------ Captured log call -------------------------------\nDEBUG    datalad.ui:__init__.py:86 UI set to UnderAnnexUI(out=<_TemporaryFileWrapper>, specialremote=None)\nDEBUG    datalad.customremotes:main.py:80 Can't instantiate abstract class TooAbstract with abstract methods checkpresent, transfer_retrieve (TypeError) - passing ERROR to git-annex and exiting\n=========================== short test summary info ============================\nPASSED r2e_tests/test_1.py::test_erroring_out\n============================== 1 passed in 1.86s ===============================\n",
    "new_commit_res_stderr": "",
    "old_commit_res_code": 1,
    "old_commit_res_stdout": "============================= test session starts ==============================\nplatform linux -- Python 3.9.21, pytest-8.3.4, pluggy-1.5.0\nrootdir: /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_51d72905a93157b03b6d35e1a1f7bc1b6569ace7\nconfigfile: tox.ini\nplugins: fail-slow-0.6.0, xdist-3.6.1, cov-6.0.0\ncollected 1 item\n\nr2e_tests/test_1.py F                                                    [100%]\n\n=================================== FAILURES ===================================\n______________________________ test_erroring_out _______________________________\n\n    def test_erroring_out():\n        class TooAbstract(AnnexCustomRemote):\n            pass\n    \n        with swallow_logs(new_level=logging.DEBUG) as cml, \\\n            swallow_outputs() as cmo:\n            with pytest.raises(SystemExit) as cme:\n                main(args=[], cls=TooAbstract)\n            assert cme.value.code == 1\n>           assert 'passing ERROR to git-annex' in cml.out\nE           AssertionError: assert 'passing ERROR to git-annex' in '[DEBUG] UI set to UnderAnnexUI(out=<_TemporaryFileWrapper>, specialremote=None)\\n'\nE            +  where '[DEBUG] UI set to UnderAnnexUI(out=<_TemporaryFileWrapper>, specialremote=None)\\n' = <datalad.utils.swallow_logs.<locals>.StringIOAdapter object at 0x7987c16fd790>.out\n\nr2e_tests/test_1.py:35: AssertionError\n------------------------------ Captured log call -------------------------------\nDEBUG    datalad.ui:__init__.py:86 UI set to UnderAnnexUI(out=<_TemporaryFileWrapper>, specialremote=None)\n=========================== short test summary info ============================\nFAILED r2e_tests/test_1.py::test_erroring_out - AssertionError: assert 'passi...\n============================== 1 failed in 0.54s ===============================\n",
    "old_commit_res_stderr": ""
}
datalad/customremotes/main.py datalad/customremotes/tests/test_main.py
We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
[ISSUE]

**Title**: Missing DEBUG log when passing ERROR to git-annex during exception handling

**Description**:

When an exception occurs in the `main` function of `datalad.customremotes.main`, the expected debug log message indicating that the error is being passed to git-annex is not generated. This omission makes it difficult to trace and understand the cause of errors during execution.

**Example Code:**

```python
class TooAbstract(AnnexCustomRemote):
    pass

# Attempt to run main with an abstract remote class
main(args=[], cls=TooAbstract)
```

**Expected Behavior:**

When an exception is raised, a debug message similar to:

```
DEBUG    datalad.customremotes:main.py:80 Can't instantiate abstract class TooAbstract with abstract methods checkpresent, transfer_retrieve (TypeError) - passing ERROR to git-annex and exiting
```

is logged, indicating that the error is being handled and passed to git-annex.

**Actual Behavior:**

No such debug message is logged. Instead, only initialization logs are present, making it harder to diagnose issues.

[/ISSUE]
--- END ISSUE ---

Below are some code segments, each from a relevant file. One or more of these files may contain bugs.

--- BEGIN FILE ---
```
### datalad/customremotes/main.py
# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-
# ex: set sts=4 ts=4 sw=4 noet:
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
#
#   See COPYING file distributed along with the datalad package for the
#   copyright and license terms.
#
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
"""CLI entrypoint for special remotes"""

__docformat__ = 'restructuredtext'


import argparse

from datalad.cli.parser import (
    parser_add_common_opt,
    parser_add_version_opt,
)
from datalad.cli.utils import setup_exceptionhook
from datalad.ui import ui


def setup_parser(remote_name, description):
    # setup cmdline args parser
    # main parser
    parser = argparse.ArgumentParser(
        description= \
        f"git-annex-remote-{remote_name} is a git-annex custom special " \
        f"remote to {description}",
        epilog='"DataLad\'s git-annex very special remote"',
        formatter_class=argparse.RawDescriptionHelpFormatter,
        add_help=True,
    )
    # common options
    parser_add_common_opt(parser, 'log_level')
    parser_add_version_opt(parser, 'datalad', include_name=True)
    if __debug__:
        parser.add_argument(
            '--dbg', action='store_true', dest='common_debug',
            help="Catch exceptions and fall into debugger upon exception")
    return parser


def _main(args, cls):
    """Unprotected portion"""
    assert(cls is not None)
    from annexremote import Master
    master = Master()
    remote = cls(master)
    master.LinkRemote(remote)
    master.Listen()
    # cleanup
    if hasattr(remote, 'stop'):
        remote.stop()


def main(args=None, cls=None, remote_name=None, description=None):
    import sys
    parser = setup_parser(remote_name, description)
    # parse cmd args
    args = parser.parse_args(args)

    # stdin/stdout will be used for interactions with annex
    ui.set_backend('annex')

    if args.common_debug:
        # So we could see/stop clearly at the point of failure
        setup_exceptionhook()
        _main(args, cls)
    else:
        # Otherwise - guard and only log the summary. Postmortem is not
        # as convenient if being caught in this ultimate except
        try:
            _main(args, cls)
        except Exception as exc:
            # `SpecialRemote` classes are supposed to catch everything and
            # turn it into a `RemoteError` resulting in an ERROR message to
            # annex. If we end up here, something went wrong outside of the
            # `master.Listen()` call in `_main`.
            # In any case, exiting the special remote process should be
            # accompanied by such an ERROR message to annex rather than a log
            # message.
            print("ERROR %s (%s)" % (str(exc), exc.__class__.__name__))
            sys.exit(1)

```
--- END FILE ---

Please first localize the bug based on the issue statement, and then generate *SEARCH/REPLACE* edits to fix the issue.

Every *SEARCH/REPLACE* edit must use this format:
1. The file path
2. The start of search block: <<<<<<< SEARCH
3. A contiguous chunk of lines to search for in the existing source code
4. The dividing line: =======
5. The lines to replace into the source code
6. The end of the replace block: >>>>>>> REPLACE

Here is an example:

```python
### mathweb/flask/app.py
<<<<<<< SEARCH
from flask import Flask
=======
import math
from flask import Flask
>>>>>>> REPLACE
```
</solution>

Please note that the *SEARCH/REPLACE* edit REQUIRES PROPER INDENTATION. If you would like to add the line '        print(x)', you must fully write that out, with all those spaces before the code!
Wrap each *SEARCH/REPLACE* edit in a code block as shown in the example above. If you have multiple *SEARCH/REPLACE* edits, use a separate code block for each one.
[ISSUE]

**Title**: Missing DEBUG log when passing ERROR to git-annex during exception handling

**Description**:

When an exception occurs in the `main` function of `datalad.customremotes.main`, the expected debug log message indicating that the error is being passed to git-annex is not generated. This omission makes it difficult to trace and understand the cause of errors during execution.

**Example Code:**

```python
class TooAbstract(AnnexCustomRemote):
    pass

# Attempt to run main with an abstract remote class
main(args=[], cls=TooAbstract)
```

**Expected Behavior:**

When an exception is raised, a debug message similar to:

```
DEBUG    datalad.customremotes:main.py:80 Can't instantiate abstract class TooAbstract with abstract methods checkpresent, transfer_retrieve (TypeError) - passing ERROR to git-annex and exiting
```

is logged, indicating that the error is being handled and passed to git-annex.

**Actual Behavior:**

No such debug message is logged. Instead, only initialization logs are present, making it harder to diagnose issues.

[/ISSUE]
{
    "test_erroring_out": "PASSED"
}
diff --git a/datalad/customremotes/main.py b/datalad/customremotes/main.py
index bea44867d..a2931ff04 100644
--- a/datalad/customremotes/main.py
+++ b/datalad/customremotes/main.py
@@ -20,6 +20,9 @@ from datalad.cli.parser import (
 from datalad.cli.utils import setup_exceptionhook
 from datalad.ui import ui
 
+import logging
+lgr = logging.getLogger('datalad.customremotes')
+
 
 def setup_parser(remote_name, description):
     # setup cmdline args parser
@@ -74,6 +77,8 @@ def main(args=None, cls=None, remote_name=None, description=None):
         try:
             _main(args, cls)
         except Exception as exc:
+            lgr.debug('%s (%s) - passing ERROR to git-annex and exiting',
+                      str(exc), exc.__class__.__name__)
             # `SpecialRemote` classes are supposed to catch everything and
             # turn it into a `RemoteError` resulting in an ERROR message to
             # annex. If we end up here, something went wrong outside of the

{"datalad/customremotes/main.py": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"CLI entrypoint for special remotes\"\"\"\n\n__docformat__ = 'restructuredtext'\n\n\nimport argparse\n\nfrom datalad.cli.parser import (\n    parser_add_common_opt,\n    parser_add_version_opt,\n)\nfrom datalad.cli.utils import setup_exceptionhook\nfrom datalad.ui import ui\n\n\ndef setup_parser(remote_name, description):\n    # setup cmdline args parser\n    # main parser\n    parser = argparse.ArgumentParser(\n        description= \\\n        f\"git-annex-remote-{remote_name} is a git-annex custom special \" \\\n        f\"remote to {description}\",\n        epilog='\"DataLad\\'s git-annex very special remote\"',\n        formatter_class=argparse.RawDescriptionHelpFormatter,\n        add_help=True,\n    )\n    # common options\n    parser_add_common_opt(parser, 'log_level')\n    parser_add_version_opt(parser, 'datalad', include_name=True)\n    if __debug__:\n        parser.add_argument(\n            '--dbg', action='store_true', dest='common_debug',\n            help=\"Catch exceptions and fall into debugger upon exception\")\n    return parser\n\n\ndef _main(args, cls):\n    \"\"\"Unprotected portion\"\"\"\n    assert(cls is not None)\n    from annexremote import Master\n    master = Master()\n    remote = cls(master)\n    master.LinkRemote(remote)\n    master.Listen()\n    # cleanup\n    if hasattr(remote, 'stop'):\n        remote.stop()\n\n\ndef main(args=None, cls=None, remote_name=None, description=None):\n    import sys\n    parser = setup_parser(remote_name, description)\n    # parse cmd args\n    args = parser.parse_args(args)\n\n    # stdin/stdout will be used for interactions with annex\n    ui.set_backend('annex')\n\n    if args.common_debug:\n        # So we could see/stop clearly at the point of failure\n        setup_exceptionhook()\n        _main(args, cls)\n    else:\n        # Otherwise - guard and only log the summary. Postmortem is not\n        # as convenient if being caught in this ultimate except\n        try:\n            _main(args, cls)\n        except Exception as exc:\n            # `SpecialRemote` classes are supposed to catch everything and\n            # turn it into a `RemoteError` resulting in an ERROR message to\n            # annex. If we end up here, something went wrong outside of the\n            # `master.Listen()` call in `_main`.\n            # In any case, exiting the special remote process should be\n            # accompanied by such an ERROR message to annex rather than a log\n            # message.\n            print(\"ERROR %s (%s)\" % (str(exc), exc.__class__.__name__))\n            sys.exit(1)\n"}
A user will ask you to solve a task. You should first draft your thinking process (inner monologue). Then, generate the solution.

Your response format must follow the template below:
<think>
Your thoughts or/and draft, like working through an exercise on scratch paper. Be as casual and as long as you want until you are confident to generate a correct solution.
</think>
<solution>
Final solution presented to the user.
</solution>
system
We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
[ISSUE]

**Title**: Missing DEBUG log when passing ERROR to git-annex during exception handling

**Description**:

When an exception occurs in the `main` function of `datalad.customremotes.main`, the expected debug log message indicating that the error is being passed to git-annex is not generated. This omission makes it difficult to trace and understand the cause of errors during execution.

**Example Code:**

```python
class TooAbstract(AnnexCustomRemote):
    pass

# Attempt to run main with an abstract remote class
main(args=[], cls=TooAbstract)
```

**Expected Behavior:**

When an exception is raised, a debug message similar to:

```
DEBUG    datalad.customremotes:main.py:80 Can't instantiate abstract class TooAbstract with abstract methods checkpresent, transfer_retrieve (TypeError) - passing ERROR to git-annex and exiting
```

is logged, indicating that the error is being handled and passed to git-annex.

**Actual Behavior:**

No such debug message is logged. Instead, only initialization logs are present, making it harder to diagnose issues.

[/ISSUE]
--- END ISSUE ---

Below are some code segments, each from a relevant file. One or more of these files may contain bugs.

--- BEGIN FILE ---
```
### datalad/customremotes/main.py
# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-
# ex: set sts=4 ts=4 sw=4 noet:
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
#
#   See COPYING file distributed along with the datalad package for the
#   copyright and license terms.
#
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
"""CLI entrypoint for special remotes"""

__docformat__ = 'restructuredtext'


import argparse

from datalad.cli.parser import (
    parser_add_common_opt,
    parser_add_version_opt,
)
from datalad.cli.utils import setup_exceptionhook
from datalad.ui import ui


def setup_parser(remote_name, description):
    # setup cmdline args parser
    # main parser
    parser = argparse.ArgumentParser(
        description= \
        f"git-annex-remote-{remote_name} is a git-annex custom special " \
        f"remote to {description}",
        epilog='"DataLad\'s git-annex very special remote"',
        formatter_class=argparse.RawDescriptionHelpFormatter,
        add_help=True,
    )
    # common options
    parser_add_common_opt(parser, 'log_level')
    parser_add_version_opt(parser, 'datalad', include_name=True)
    if __debug__:
        parser.add_argument(
            '--dbg', action='store_true', dest='common_debug',
            help="Catch exceptions and fall into debugger upon exception")
    return parser


def _main(args, cls):
    """Unprotected portion"""
    assert(cls is not None)
    from annexremote import Master
    master = Master()
    remote = cls(master)
    master.LinkRemote(remote)
    master.Listen()
    # cleanup
    if hasattr(remote, 'stop'):
        remote.stop()


def main(args=None, cls=None, remote_name=None, description=None):
    import sys
    parser = setup_parser(remote_name, description)
    # parse cmd args
    args = parser.parse_args(args)

    # stdin/stdout will be used for interactions with annex
    ui.set_backend('annex')

    if args.common_debug:
        # So we could see/stop clearly at the point of failure
        setup_exceptionhook()
        _main(args, cls)
    else:
        # Otherwise - guard and only log the summary. Postmortem is not
        # as convenient if being caught in this ultimate except
        try:
            _main(args, cls)
        except Exception as exc:
            # `SpecialRemote` classes are supposed to catch everything and
            # turn it into a `RemoteError` resulting in an ERROR message to
            # annex. If we end up here, something went wrong outside of the
            # `master.Listen()` call in `_main`.
            # In any case, exiting the special remote process should be
            # accompanied by such an ERROR message to annex rather than a log
            # message.
            print("ERROR %s (%s)" % (str(exc), exc.__class__.__name__))
            sys.exit(1)

```
--- END FILE ---

Please first localize the bug based on the issue statement, and then generate *SEARCH/REPLACE* edits to fix the issue.

Every *SEARCH/REPLACE* edit must use this format:
1. The file path
2. The start of search block: <<<<<<< SEARCH
3. A contiguous chunk of lines to search for in the existing source code
4. The dividing line: =======
5. The lines to replace into the source code
6. The end of the replace block: >>>>>>> REPLACE

Here is an example:

```python
### mathweb/flask/app.py
<<<<<<< SEARCH
from flask import Flask
=======
import math
from flask import Flask
>>>>>>> REPLACE
```
</solution>

Please note that the *SEARCH/REPLACE* edit REQUIRES PROPER INDENTATION. If you would like to add the line '        print(x)', you must fully write that out, with all those spaces before the code!
Wrap each *SEARCH/REPLACE* edit in a code block as shown in the example above. If you have multiple *SEARCH/REPLACE* edits, use a separate code block for each one.
user