{
    "file_diffs": [
        {
            "old_file_content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# -*- coding: utf-8 -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"Test testing utilities\n\n\"\"\"\n\nimport os, os.path as op\nimport shutil\nimport sys\nimport logging\nfrom unittest.mock import patch\nimport builtins\n\nfrom operator import itemgetter\nfrom os.path import dirname, normpath, pardir, basename\nfrom os.path import isabs, expandvars, expanduser\nfrom collections import OrderedDict\n\nfrom ..utils import updated\nfrom os.path import join as opj, abspath, exists\nfrom ..utils import (\n    rotree, swallow_outputs, swallow_logs, setup_exceptionhook, md5sum\n)\nfrom ..utils import getpwd, chpwd\nfrom ..utils import get_path_prefix\nfrom ..utils import auto_repr\nfrom ..utils import find_files\nfrom ..utils import is_interactive\nfrom ..utils import line_profile\nfrom ..utils import not_supported_on_windows\nfrom ..utils import file_basename\nfrom ..utils import expandpath, is_explicit_path\nfrom ..utils import assure_unicode\nfrom ..utils import knows_annex\nfrom ..utils import any_re_search\nfrom ..utils import unique\nfrom ..utils import all_same\nfrom ..utils import partition\nfrom ..utils import get_func_kwargs_doc\nfrom ..utils import make_tempfile\nfrom ..utils import on_windows\nfrom ..utils import _path_\nfrom ..utils import get_timestamp_suffix\nfrom ..utils import get_trace\nfrom ..utils import get_dataset_root\nfrom ..utils import better_wraps\nfrom ..utils import path_startswith\nfrom ..utils import path_is_subpath\nfrom ..utils import dlabspath\nfrom ..utils import safe_print\nfrom ..utils import generate_chunks\nfrom ..utils import disable_logger\nfrom ..utils import import_modules, import_module_from_file\nfrom ..utils import get_open_files\nfrom ..utils import map_items\nfrom ..utils import unlink\nfrom ..utils import CMD_MAX_ARG\nfrom ..utils import create_tree\nfrom ..utils import never_fail\nfrom ..utils import Path\n\nfrom ..support.annexrepo import AnnexRepo\n\nfrom nose.tools import (\n    assert_equal,\n    assert_false,\n    assert_greater,\n    assert_true,\n    eq_,\n    ok_,\n)\nfrom datalad.tests.utils import nok_, assert_re_in\n\nfrom .utils import with_tempfile, assert_in, with_tree\nfrom .utils import SkipTest\nfrom .utils import assert_cwd_unchanged, skip_if_on_windows\nfrom .utils import assure_dict_from_str, assure_list_from_str\nfrom .utils import assure_unicode\nfrom .utils import as_unicode\nfrom .utils import assure_bool\nfrom .utils import assure_iter\nfrom .utils import assure_list\nfrom .utils import ok_generator\nfrom .utils import assert_not_in\nfrom .utils import assert_raises\nfrom .utils import ok_startswith\nfrom .utils import skip_if_no_module\nfrom .utils import (\n    probe_known_failure, skip_known_failure, known_failure, known_failure_v6,\n    skip_if,\n    ok_file_has_content,\n    known_failure_windows,\n    has_symlink_capability,\n)\nfrom .utils import OBSCURE_FILENAME\n\n\ndef test_get_func_kwargs_doc():\n    def some_func(arg1, kwarg1=None, kwarg2=\"bu\"):\n        return\n    eq_(get_func_kwargs_doc(some_func), ['arg1', 'kwarg1', 'kwarg2'])\n\n\ndef test_better_wraps():\n    from functools import wraps\n    from datalad.utils import getargspec\n\n    def wraps_decorator(func):\n        @wraps(func)\n        def new_func(*args, **kwargs):\n            return func(*args, **kwargs)\n\n        return new_func\n\n    def better_decorator(func):\n        @better_wraps(func)\n        def new_func(*args, **kwargs):\n            return func(*args, **kwargs)\n\n        return new_func\n\n    @wraps_decorator\n    def function1(a, b, c):\n        return \"function1\"\n\n    @better_decorator\n    def function2(a, b, c):\n        return \"function2\"\n\n    eq_(\"function1\", function1(1, 2, 3))\n    eq_(getargspec(function1)[0], [])\n    eq_(\"function2\", function2(1, 2, 3))\n    eq_(getargspec(function2)[0], ['a', 'b', 'c'])\n\n\n@with_tempfile(mkdir=True)\ndef test_rotree(d):\n    d2 = opj(d, 'd1', 'd2')  # deep nested directory\n    f = opj(d2, 'f1')\n    os.makedirs(d2)\n    with open(f, 'w') as f_:\n        f_.write(\"LOAD\")\n    with swallow_logs():\n        ar = AnnexRepo(d2)\n    rotree(d)\n    # we shouldn't be able to delete anything UNLESS in \"crippled\" situation:\n    # root, or filesystem is FAT etc\n    # Theoretically annex should declare FS as crippled when ran as root, but\n    # see http://git-annex.branchable.com/bugs/decides_that_FS_is_crippled_\n    # under_cowbuilder___40__symlinks_supported_etc__41__/#comment-60c3cbe2710d6865fb9b7d6e247cd7aa\n    # so explicit 'or'\n    if not (ar.is_crippled_fs() or (os.getuid() == 0)):\n        assert_raises(OSError, os.unlink, f)          # OK to use os.unlink\n        assert_raises(OSError, unlink, f)   # and even with waiting and trying!\n        assert_raises(OSError, shutil.rmtree, d)\n        # but file should still be accessible\n        with open(f) as f_:\n            eq_(f_.read(), \"LOAD\")\n    # make it RW\n    rotree(d, False)\n    unlink(f)\n    shutil.rmtree(d)\n\n\ndef test_swallow_outputs():\n    with swallow_outputs() as cm:\n        eq_(cm.out, '')\n        sys.stdout.write(\"out normal\")\n        sys.stderr.write(\"out error\")\n        eq_(cm.out, 'out normal')\n        sys.stdout.write(\" and more\")\n        eq_(cm.out, 'out normal and more')  # incremental\n        eq_(cm.err, 'out error')\n        eq_(cm.err, 'out error')  # the same value if multiple times\n\n\n@with_tempfile\ndef test_swallow_logs(logfile):\n    lgr = logging.getLogger('datalad')\n    with swallow_logs(new_level=9) as cm:\n        eq_(cm.out, '')\n        lgr.log(8, \"very heavy debug\")\n        eq_(cm.out, '')  # not even visible at level 9\n        lgr.log(9, \"debug1\")\n        eq_(cm.out, '[Level 9] debug1\\n')  # not even visible at level 9\n        lgr.info(\"info\")\n        # not even visible at level 9\n        eq_(cm.out, '[Level 9] debug1\\n[INFO] info\\n')\n    with swallow_logs(new_level=9, file_=logfile) as cm:\n        eq_(cm.out, '')\n        lgr.info(\"next info\")\n    from datalad.tests.utils import ok_file_has_content\n    ok_file_has_content(logfile, \"[INFO] next info\", strip=True)\n\n\ndef test_swallow_logs_assert():\n    lgr = logging.getLogger('datalad.tests')\n    with swallow_logs(new_level=9) as cm:\n        # nothing was logged so should fail\n        assert_raises(AssertionError, cm.assert_logged)\n        lgr.info(\"something\")\n        cm.assert_logged(\"something\")\n        cm.assert_logged(level=\"INFO\")\n        cm.assert_logged(\"something\", level=\"INFO\")\n\n        # even with regex = False should match above\n        cm.assert_logged(\"something\", regex=False)\n        cm.assert_logged(level=\"INFO\", regex=False)\n        cm.assert_logged(\"something\", level=\"INFO\", regex=False)\n\n        # different level\n        assert_raises(AssertionError,\n                      cm.assert_logged, \"something\", level=\"DEBUG\")\n        assert_raises(AssertionError, cm.assert_logged, \"else\")\n\n        cm.assert_logged(\"some.hing\", level=\"INFO\")  # regex ;-)\n        # does match\n        assert_raises(AssertionError,\n                      cm.assert_logged, \"ome.hing\", level=\"INFO\")\n        # but we can change it\n        cm.assert_logged(\"some.hing\", level=\"INFO\", match=False)\n    # and we can continue doing checks after we left the cm block\n    cm.assert_logged(\"some.hing\", level=\"INFO\", match=False)\n    # and we indeed logged something\n    cm.assert_logged(match=False)\n\n\ndef test_disable_logger():\n\n    # get a logger hierarchy:\n    lgr_top = logging.getLogger('datalad')\n    lgr_middle = logging.getLogger('datalad.tests')\n    lgr_bottom = logging.getLogger('datalad.tests.utils')\n\n    with swallow_logs(new_level=logging.DEBUG) as cml:\n        with disable_logger():  # default: 'datalad':\n            lgr_top.debug(\"log sth at top level\")\n            lgr_middle.debug(\"log sth at mid level\")\n            lgr_bottom.debug(\"log sth at bottom level\")\n        # nothing logged:\n        assert_raises(AssertionError, cml.assert_logged)\n\n    # again, but pass in the logger at mid level:\n    with swallow_logs(new_level=logging.DEBUG) as cml:\n        with disable_logger(lgr_middle):\n            lgr_top.debug(\"log sth at top level\")\n            lgr_middle.debug(\"log sth at mid level\")\n            lgr_bottom.debug(\"log sth at bottom level\")\n        # top level unaffected:\n        cml.assert_logged(\"log sth at top level\", level=\"DEBUG\", regex=False)\n        # but both of the lower ones don't log anything:\n        assert_raises(AssertionError, cml.assert_logged, \"log sth at mid level\")\n        assert_raises(AssertionError, cml.assert_logged, \"log sth at bottom level\")\n\n\ndef _check_setup_exceptionhook(interactive):\n    old_exceptionhook = sys.excepthook\n\n    post_mortem_tb = []\n\n    def our_post_mortem(tb):\n        post_mortem_tb.append(tb)\n\n    with patch('sys.excepthook'), \\\n            patch('datalad.utils.is_interactive', lambda: interactive), \\\n            patch('pdb.post_mortem', our_post_mortem):\n        setup_exceptionhook()\n        our_exceptionhook = sys.excepthook\n        ok_(old_exceptionhook != our_exceptionhook)\n        with swallow_logs() as cml, swallow_outputs() as cmo:\n            # we need to call our_exceptionhook explicitly b/c nose\n            # swallows all Exceptions and hook never gets executed\n            try:\n                raise RuntimeError\n            except Exception as e:  # RuntimeError:\n                type_, value_, tb_ = sys.exc_info()\n            our_exceptionhook(type_, value_, tb_)\n            # Happens under tox environment but not in manually crafted\n            # ones -- not yet sure what it is about but --dbg does work\n            # with python3 so lettting it skip for now\n            raise SkipTest(\n                \"TODO: Not clear why in PY3 calls cleanup if we try to \"\n                \"access the beast\"\n            )\n            assert_in('Traceback (most recent call last)', cmo.err)\n            assert_in('in _check_setup_exceptionhook', cmo.err)\n            if interactive:\n                assert_equal(post_mortem_tb[0], tb_)\n            else:\n                assert_equal(post_mortem_tb, [])\n                # assert_in('We cannot setup exception hook', cml.out)\n\n    eq_(old_exceptionhook, sys.excepthook)\n\n\ndef test_setup_exceptionhook():\n    for tval in [True, False]:\n        yield _check_setup_exceptionhook, tval\n\n\ndef test_md5sum():\n    # just a smoke (encoding/decoding) test for md5sum\n    _ = md5sum(__file__)\n\n\n@with_tree([('1.tar.gz', (('1 f.txt', '1 f load'),))])\ndef test_md5sum_archive(d):\n    # just a smoke (encoding/decoding) test for md5sum\n    _ = md5sum(opj(d, '1.tar.gz'))\n\n\ndef test_updated():\n    d = {}\n    eq_(updated(d, {1: 2}), {1: 2})\n    eq_(d, {})\n\n    d = {'a': 'b'}\n    eq_(updated(d, ((0, 1), (2, 3))), {0: 1, 'a': 'b', 2: 3})\n    eq_(d, {'a': 'b'})\n\n    # and that it would maintain the type\n    d = OrderedDict(((99, 0), ('z', 0), ('a', 0)))\n    d_ = updated(d, {0: 1})\n    ok_(isinstance(d_, OrderedDict))\n    eq_(d_, OrderedDict(((99, 0), ('z', 0), ('a', 0), (0, 1))))\n\n\ndef test_get_local_file_url_windows():\n    raise SkipTest(\"TODO\")\n\n\n@assert_cwd_unchanged\ndef test_getpwd_basic():\n    pwd = getpwd()\n    ok_(isabs(pwd))\n    eq_(os.getcwd(), abspath(pwd))\n\n    # that we do not chdir anywhere if None provided\n    with patch('os.chdir') as oschdir:\n        with chpwd(None):\n            eq_(getpwd(), pwd)\n        assert_false(oschdir.called)\n\n\n@assert_cwd_unchanged(ok_to_chdir=True)\n@with_tempfile(mkdir=True)\ndef test_getpwd_change_mode(tdir):\n    from datalad import utils\n    if utils._pwd_mode != 'PWD':\n        raise SkipTest(\"Makes sense to be tested only in PWD mode, \"\n                       \"but we seems to be beyond that already\")\n    # The evil plain chdir call\n    os.chdir(tdir)\n    # Just testing the logic of switching to cwd mode and issuing a warning\n    with swallow_logs(new_level=logging.WARNING) as cml:\n        pwd = getpwd()\n        eq_(pwd, os.path.realpath(pwd))  # might have symlinks, thus realpath\n    assert_in(\"symlinks in the paths will be resolved\", cml.out)\n    eq_(utils._pwd_mode, 'cwd')\n\n\n@skip_if_on_windows\n@with_tempfile(mkdir=True)\n@assert_cwd_unchanged\ndef test_getpwd_symlink(tdir):\n    sdir = opj(tdir, 's1')\n    pwd_orig = getpwd()\n    os.symlink('.', sdir)\n    s1dir = opj(sdir, 's1')\n    s2dir = opj(sdir, 's2')\n    try:\n        chpwd(sdir)\n        pwd = getpwd()\n        eq_(pwd, sdir)\n        chpwd('s1')\n        eq_(getpwd(), s1dir)\n        chpwd('.')\n        eq_(getpwd(), s1dir)\n        chpwd('..')\n        eq_(getpwd(), sdir)\n    finally:\n        chpwd(pwd_orig)\n\n    # test context handler way of use\n    with chpwd(s1dir):\n        eq_(getpwd(), s1dir)\n    eq_(getpwd(), pwd_orig)\n\n    assert_false(exists(s2dir))\n    with assert_raises(OSError):\n        with chpwd(s2dir):\n            pass\n    with chpwd(s2dir, mkdir=True):\n        ok_(exists(s2dir))\n        eq_(getpwd(), s2dir)\n\n\n@with_tempfile(mkdir=True)\ndef test_chpwd_obscure_name(topdir):\n    path = op.join(topdir, OBSCURE_FILENAME)\n    os.mkdir(path)\n    # Just check that call doesn't fail.\n    with chpwd(path):\n        pass\n\n\ndef test_auto_repr():\n\n    class WithoutReprClass:\n        def __init__(self):\n            self.a = \"does not matter\"\n\n    @auto_repr\n    class buga:\n        def __init__(self):\n            self.a = 1\n            self.b = list(range(100))\n            self.c = WithoutReprClass()\n            self._c = \"protect me\"\n\n        def some(self):\n            return \"some\"\n\n    assert_equal(\n        repr(buga()),\n        \"buga(a=1, b=<<[0, 1, 2, 3, 4, 5, 6, ...>>, c=<WithoutReprClass>)\"\n    )\n    assert_equal(buga().some(), \"some\")\n\n\ndef test_assure_iter():\n    s = {1}\n    assert assure_iter(None, set) == set()\n    assert assure_iter(1, set) == s\n    assert assure_iter(1, list) == [1]\n    assert assure_iter(s, set) is s\n    assert assure_iter(s, set, copy=True) is not s\n\n\ndef test_assure_list_copy():\n    l = [1]\n    assert assure_list(l) is l\n    assert assure_list(l, copy=True) is not l\n\n\ndef test_assure_list_from_str():\n    assert_equal(assure_list_from_str(''), None)\n    assert_equal(assure_list_from_str([]), None)\n    assert_equal(assure_list_from_str('somestring'), ['somestring'])\n    assert_equal(assure_list_from_str('some\\nmultiline\\nstring'), ['some', 'multiline', 'string'])\n    assert_equal(assure_list_from_str(['something']), ['something'])\n    assert_equal(assure_list_from_str(['a', 'listof', 'stuff']), ['a', 'listof', 'stuff'])\n\n\ndef test_assure_dict_from_str():\n    assert_equal(assure_dict_from_str(''), None)\n    assert_equal(assure_dict_from_str({}), None)\n    target_dict = dict(\n        __ac_name='{user}', __ac_password='{password}',\n        cookies_enabled='', submit='Log in'\n    )\n    string = '__ac_name={user}\\n__ac_password={password}\\nsubmit=Log ' \\\n               'in\\ncookies_enabled='\n    assert_equal(assure_dict_from_str(string), target_dict)\n    assert_equal(assure_dict_from_str(\n        target_dict),\n        target_dict)\n\n\ndef test_assure_bool():\n    for values, t in [\n        (['True', 1, '1', 'yes', 'on'], True),\n        (['False', 0, '0', 'no', 'off'], False)\n    ]:\n        for v in values:\n            eq_(assure_bool(v), t)\n    assert_raises(ValueError, assure_bool, \"unknown\")\n\n\ndef test_generate_chunks():\n    ok_generator(generate_chunks([1], 1))\n    eq_(list(generate_chunks([1], 1)), [[1]])\n    eq_(list(generate_chunks([1], 2)), [[1]])\n    eq_(list(generate_chunks([1, 2, 3], 2)), [[1, 2], [3]])\n    # type is preserved\n    eq_(list(generate_chunks((1, 2, 3), 2)), [(1, 2), (3,)])\n    # no hangers\n    eq_(list(generate_chunks((1, 2, 3, 4), 2)), [(1, 2), (3, 4)])\n    assert_raises(AssertionError, list, generate_chunks([1], 0))\n\n\ndef test_any_re_search():\n    assert_true(any_re_search('a', 'a'))\n    assert_true(any_re_search('a', 'bab'))\n    assert_false(any_re_search('^a', 'bab'))\n    assert_true(any_re_search(['b', '.ab'], 'bab'))\n    assert_false(any_re_search(['^b', 'bab'], 'ab'))\n\n\ndef test_find_files():\n    tests_dir = dirname(__file__)\n    proj_dir = normpath(opj(dirname(__file__), pardir))\n\n    ff = find_files('.*', proj_dir)\n    ok_generator(ff)\n    files = list(ff)\n    assert(len(files) > 10)  # we have more than 10 test files here\n    assert_in(opj(tests_dir, 'test_utils.py'), files)\n    # and no directories should be mentioned\n    assert_not_in(tests_dir, files)\n\n    ff2 = find_files('.*', proj_dir, dirs=True)\n    files2 = list(ff2)\n    assert_in(opj(tests_dir, 'test_utils.py'), files2)\n    assert_in(tests_dir, files2)\n\n    # now actually matching the path\n    ff3 = find_files(\n        r'.*\\\\test_.*\\.py$' if on_windows else r'.*/test_.*\\.py$',\n        proj_dir, dirs=True)\n    files3 = list(ff3)\n    assert_in(opj(tests_dir, 'test_utils.py'), files3)\n    assert_not_in(tests_dir, files3)\n    for f in files3:\n        ok_startswith(basename(f), 'test_')\n\n\n@with_tree(tree={\n    '.git': {\n        '1': '2'\n    },\n    'd1': {\n        '.git': 'possibly a link from submodule'\n    },\n    'git': 'just a file'\n})\ndef test_find_files_exclude_vcs(repo):\n    ff = find_files('.*', repo, dirs=True)\n    files = list(ff)\n    assert_equal({basename(f) for f in files}, {'d1', 'git'})\n    assert_not_in(opj(repo, '.git'), files)\n\n    ff = find_files('.*', repo, dirs=True, exclude_vcs=False)\n    files = list(ff)\n    assert_equal({basename(f) for f in files}, {'d1', 'git', '.git', '1'})\n    assert_in(opj(repo, '.git'), files)\n\n\ndef test_not_supported_on_windows():\n    with patch('datalad.utils.on_windows', True):\n        assert_raises(NotImplementedError, not_supported_on_windows)\n        assert_raises(NotImplementedError, not_supported_on_windows, \"msg\")\n\n    with patch('datalad.utils.on_windows', False):\n        assert_equal(not_supported_on_windows(), None)\n        assert_equal(not_supported_on_windows(\"msg\"), None)\n\n\ndef test_file_basename():\n    eq_(file_basename('1'), '1')\n    eq_(file_basename('d1/1'), '1')\n    eq_(file_basename('/d1/1'), '1')\n    eq_(file_basename('1.'), '1.')\n    eq_(file_basename('1.tar.gz'), '1')\n    eq_(file_basename('1.Tar.gz'), '1')\n    eq_(file_basename('1._bak.gz'), '1')\n    eq_(file_basename('1.tar.gz', return_ext=True), ('1', 'tar.gz'))\n    eq_(file_basename('/tmp/1.tar.gz'), '1')\n    eq_(file_basename('/tmp/1.longish.gz'), '1.longish')\n    eq_(file_basename('1_R1.1.1.tar.gz'), '1_R1.1.1')\n    eq_(file_basename('ds202_R1.1.1.tgz'), 'ds202_R1.1.1')\n\n\ndef test_expandpath():\n    eq_(expandpath(\"some\", False), expanduser('some'))\n    eq_(expandpath(\"some\", False), expandvars('some'))\n    assert_true(isabs(expandpath('some')))\n    # this may have to go because of platform issues\n    eq_(expandpath(\"$HOME\"), expanduser('~'))\n\n\ndef test_is_explicit_path():\n    # by default expanded paths are absolute, hence explicit\n    assert_true(is_explicit_path(expandpath('~')))\n    assert_false(is_explicit_path(\"here\"))\n\n\n@with_tempfile\n@with_tempfile\ndef test_knows_annex(here, there):\n    from datalad.support.gitrepo import GitRepo\n    from datalad.support.annexrepo import AnnexRepo\n    GitRepo(path=here, create=True)\n    assert_false(knows_annex(here))\n    AnnexRepo(path=here, create=True)\n    assert_true(knows_annex(here))\n    GitRepo.clone(path=there, url=here, create=True)\n    assert_true(knows_annex(there))\n\n\ndef test_make_tempfile():\n    # check if mkdir, content conflict caught\n    with assert_raises(ValueError):\n        with make_tempfile(content=\"blah\", mkdir=True):  # pragma: no cover\n            pass\n\n\ndef test_unique():\n    eq_(unique(range(3)), [0, 1, 2])\n    eq_(unique(range(3), reverse=True), [0, 1, 2])\n    eq_(unique((1, 0, 1, 3, 2, 0, 1)), [1, 0, 3, 2])\n    eq_(unique((1, 0, 1, 3, 2, 0, 1), reverse=True), [3, 2, 0, 1])\n    eq_(unique([]), [])\n    eq_(unique([], reverse=True), [])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)]), [(1, 2), (1,), (0, 3)])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)], reverse=True),\n        [(1,), (1, 2), (0, 3)])\n\n    # with a key now\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)],\n               key=itemgetter(0)), [(1, 2), (0, 3)])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)],\n               key=itemgetter(0), reverse=True), [(1, 2), (0, 3)])\n\n    eq_(unique([(1, 2), (1, 3), (1, 2), (0, 3)],\n               key=itemgetter(1)), [(1, 2), (1, 3)])\n    eq_(unique([(1, 2), (1, 3), (1, 2), (0, 3)],\n               key=itemgetter(1), reverse=True), [(1, 2), (0, 3)])\n\n\ndef test_all_same():\n    ok_(all_same([0, 0, 0]))\n    ok_(not all_same([0, 0, '0']))\n    ok_(not all_same([]))\n\n    def never_get_to_not_needed():\n        yield 'a'\n        yield 'a'\n        yield 'b'\n        raise ValueError(\"Should not get here since on b should return\")\n\n    ok_(not all_same(never_get_to_not_needed()))\n\n    def gen1(n):\n        for x in range(n):\n            yield 'a'\n    ok_(not all_same(gen1(0)))\n    ok_(all_same(gen1(1)))\n    ok_(all_same(gen1(2)))\n    ok_(all_same(gen1(10)))\n\n\ndef test_partition():\n    def fn(*args, **kwargs):\n        left, right = partition(*args, **kwargs)\n        return list(left), list(right)\n\n    eq_(fn([False, True, False]),\n        ([False, False], [True]))\n\n    eq_(fn([1, 5, 4, 10], lambda x: x > 4),\n        ([1, 4], [5, 10]))\n\n    eq_(fn([1, 5, 4, 10], lambda x: x < 0),\n        ([1, 5, 4, 10], []))\n\n\ndef test_path_():\n    eq_(_path_('a'), 'a')\n    if on_windows:\n        eq_(_path_('a/b'), r'a\\b')\n    else:\n        p = 'a/b/c'\n        assert(_path_(p) is p)  # nothing is done to it whatsoever\n        eq_(_path_(p, 'd'), 'a/b/c/d')\n\n\n@known_failure_windows\ndef test_get_timestamp_suffix():\n    # we need to patch temporarily TZ\n    import time\n    try:\n        with patch.dict('os.environ', {'TZ': 'GMT'}):\n            time.tzset()\n            # skynet DOB\n            assert_equal(get_timestamp_suffix(0), '-1970-01-01T00:00:00+0000')\n            assert_equal(get_timestamp_suffix(0, prefix=\"+\"),\n                         '+1970-01-01T00:00:00+0000')\n            # yoh found no way to mock things out and didn't want to provide\n            # explicit call to anything to get current time with the timezone,\n            # so disabling this test for now besides that it should return smth\n            # sensible ;)\n            #with patch.object(time, 'localtime', lambda: 1):\n            #    assert_equal(get_timestamp_suffix(),\n            #  '-1970-01-01T00:00:01+0000')  # skynet is 1 sec old\n            assert(get_timestamp_suffix().startswith('-'))\n    finally:\n        time.tzset()\n\n\ndef test_memoized_generator():\n    called = [0]\n\n    def g1(n):\n        \"\"\"a generator\"\"\"\n        called[0] += 1\n        for i in range(n):\n            yield i\n\n    from ..utils import saved_generator\n    ok_generator(g1(3))\n    g1_, g2_ = saved_generator(g1(3))\n    ok_generator(g1_)\n    ok_generator(g2_)\n    target = list(g1(3))\n    eq_(called[0], 1)\n    eq_(target, list(g1_))\n    eq_(called[0], 2)\n    eq_(target, list(g2_))\n    eq_(called[0], 2)  # no new call to make a generator\n    # but we can't (ab)use 2nd time\n    eq_([], list(g2_))\n\n\ndef test_assure_unicode():\n    ok_(isinstance(assure_unicode(\"m\"), str))\n    ok_(isinstance(assure_unicode('grandchild_äöü東'), str))\n    ok_(isinstance(assure_unicode(u'grandchild_äöü東'), str))\n    eq_(assure_unicode('grandchild_äöü東'), u'grandchild_äöü東')\n    # now, non-utf8\n    # Decoding could be deduced with high confidence when the string is\n    # really encoded in that codepage\n    mom_koi8r = u\"мама\".encode('koi8-r')\n    eq_(assure_unicode(mom_koi8r), u\"мама\")\n    eq_(assure_unicode(mom_koi8r, confidence=0.9), u\"мама\")\n    mom_iso8859 = u'mamá'.encode('iso-8859-1')\n    eq_(assure_unicode(mom_iso8859), u'mamá')\n    eq_(assure_unicode(mom_iso8859, confidence=0.5), u'mamá')\n    # but when we mix, it does still guess something allowing to decode:\n    mixedin = mom_koi8r + u'東'.encode('iso2022_jp') + u'東'.encode('utf-8')\n    ok_(isinstance(assure_unicode(mixedin), str))\n    # but should fail if we request high confidence result:\n    with assert_raises(ValueError):\n        assure_unicode(mixedin, confidence=0.9)\n    # For other, non string values, actually just returns original value\n    # TODO: RF to actually \"assure\" or fail??  For now hardcoding that assumption\n    assert assure_unicode(1) is 1\n\n\ndef test_pathlib_unicode():\n    eq_(str(Path(\"a\")), u\"a\")\n    eq_(str(Path(u\"β\")), u\"β\")\n\n\ndef test_as_unicode():\n    eq_(as_unicode('grandchild_äöü東'), u'grandchild_äöü東')\n    eq_(as_unicode(None), u\"\")\n    eq_(as_unicode(1), u\"1\")\n    # NOTE: u? is because result is different between PY2 (prefixes unicode repr\n    # while in PY3 is no longer needed!  So aggregation result would differ between\n    # PY2 and PY3\n    # Didn't manage to make it work in PY2\n    #TODO assert_re_in(u'\\[1, .s., u?.東.\\]', as_unicode([1, \"s\", u\"東\"]))\n    eq_(as_unicode(\"01\"), u\"01\")  # no some kind of conversion/stripping of numerals\n    with assert_raises(TypeError) as cme:\n        as_unicode(1, list)\n    assert_in(\"1 is not of any of known or provided\", str(cme.exception))\n\n\n@known_failure_windows\n@with_tempfile(mkdir=True)\ndef test_path_prefix(path):\n    eq_(get_path_prefix('/d1/d2', '/d1/d2'), '')\n    # so we are under /d1/d2 so path prefix is ..\n    eq_(get_path_prefix('/d1/d2', '/d1/d2/d3'), '..')\n    eq_(get_path_prefix('/d1/d2/d3', '/d1/d2'), 'd3')\n    # but if outside -- full path\n    eq_(get_path_prefix('/d1/d2', '/d1/d20/d3'), '/d1/d2')\n    with chpwd(path):\n        eq_(get_path_prefix('.'), '')\n        eq_(get_path_prefix('d1'), 'd1')\n        eq_(get_path_prefix('d1', 'd2'), opj(path, 'd1'))\n        eq_(get_path_prefix('..'), '..')\n\n\ndef test_get_trace():\n    assert_raises(ValueError, get_trace, [], 'boom', 'does_not_matter')\n    eq_(get_trace([('A', 'B')], 'A', 'A'), None)\n    eq_(get_trace([('A', 'B')], 'A', 'B'), [])\n    eq_(get_trace([('A', 'B')], 'A', 'C'), None)\n    eq_(get_trace([('A', 'B'),\n                   ('B', 'C')], 'A', 'C'), ['B'])\n    # order of edges doesn't matter\n    eq_(get_trace([\n        ('B', 'C'),\n        ('A', 'B')\n        ], 'A', 'C'), ['B'])\n    # mixed rubbish\n    eq_(get_trace([\n        (1, 3),\n        ('B', 'C'),\n        (None, ('schwak', 7)),\n        ('A', 'B'),\n        ], 'A', 'C'), ['B'])\n    # long\n    eq_(get_trace([\n        ('B', 'C'),\n        ('A', 'B'),\n        ('distract', 'me'),\n        ('C', 'D'),\n        ('D', 'E'),\n        ], 'A', 'E'), ['B', 'C', 'D'])\n\n\n@with_tempfile(mkdir=True)\ndef test_get_dataset_root(path):\n    eq_(get_dataset_root('/nonexistent'), None)\n    with chpwd(path):\n        repo = AnnexRepo(os.curdir, create=True)\n        subdir = opj('some', 'deep')\n        fname = opj(subdir, 'dummy')\n        os.makedirs(subdir)\n        with open(fname, 'w') as f:\n            f.write('some')\n        repo.add(fname)\n        # we can find this repo\n        eq_(get_dataset_root(os.curdir), os.curdir)\n        # and we get the type of path that we fed in\n        eq_(get_dataset_root(abspath(os.curdir)), abspath(os.curdir))\n        # subdirs are no issue\n        eq_(get_dataset_root(subdir), os.curdir)\n        # even more subdirs are no issue\n        eq_(get_dataset_root(opj(subdir, subdir)), os.curdir)\n        # non-dir paths are no issue\n        eq_(get_dataset_root(fname), os.curdir)\n\n\n@known_failure_windows\ndef test_path_startswith():\n    ok_(path_startswith('/a/b', '/a'))\n    ok_(path_startswith('/a/b', '/a/b'))\n    ok_(path_startswith('/a/b', '/a/b/'))\n    ok_(path_startswith('/a/b/', '/a/b'))\n    ok_(path_startswith('/a/b', '/'))\n    ok_(path_startswith('/aaa/b/c', '/aaa'))\n    nok_(path_startswith('/aaa/b/c', '/aa'))\n    nok_(path_startswith('/a/b', '/a/c'))\n    nok_(path_startswith('/a/b/c', '/a/c'))\n    # must not mix relative and abs\n    assert_raises(ValueError, path_startswith, 'a/b', '/a')\n    assert_raises(ValueError, path_startswith, '/a/b', 'a')\n\n\n@known_failure_windows\ndef test_path_is_subpath():\n    ok_(path_is_subpath('/a/b', '/a'))\n    ok_(path_is_subpath('/a/b/c', '/a'))\n    nok_(path_is_subpath('/a/b', '/a/b'))\n    nok_(path_is_subpath('/a/b', '/a/b/'))\n    nok_(path_is_subpath('/a/b/', '/a/b'))\n    ok_(path_is_subpath('/a/b', '/'))\n    ok_(path_is_subpath('/aaa/b/c', '/aaa'))\n    nok_(path_is_subpath('/aaa/b/c', '/aa'))\n    nok_(path_is_subpath('/a/b', '/a/c'))\n    nok_(path_is_subpath('/a/b/c', '/a/c'))\n    # must not mix relative and abs\n    assert_raises(ValueError, path_is_subpath, 'a/b', '/a')\n    assert_raises(ValueError, path_is_subpath, '/a/b', 'a')\n\n\ndef test_safe_print():\n    \"\"\"Just to test that we are getting two attempts to print\"\"\"\n\n    called = [0]\n\n    def _print(s):\n        assert_equal(s, \"bua\")\n        called[0] += 1\n        if called[0] == 1:\n            raise UnicodeEncodeError('crap', u\"\", 0, 1, 'whatever')\n\n    with patch.object(builtins, 'print', _print):\n        safe_print(\"bua\")\n    assert_equal(called[0], 2)\n\n\ndef test_probe_known_failure():\n\n    # Note: we can't test the switch \"datalad.tests.knownfailures.probe\"\n    # directly, since it was evaluated in the decorator already. So we need\n    # to have different assertions in this test based on config and have it\n    # tested across builds, which use different settings for that switch.\n\n    @probe_known_failure\n    def not_failing():\n        pass\n\n    @probe_known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n    switch = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if switch:\n        # if probing is enabled the failing is considered to be expected and\n        # therefore the decorated function doesn't actually fail:\n        failing()\n        # in opposition a function that doesn't fail raises an AssertionError:\n        assert_raises(AssertionError, not_failing)\n    else:\n        # if probing is disabled it should just fail/pass as is:\n        assert_raises(AssertionError, failing)\n        not_failing()\n\n\ndef test_skip_if():\n\n    def dummy():\n        raise AssertionError\n\n    assert_raises(AssertionError, dummy)\n    # if cond is False, call the decorated function:\n    assert_raises(AssertionError, skip_if(cond=False, method='raise')(dummy))\n    # raises SkipTest if cond is True\n    assert_raises(SkipTest, skip_if(cond=True, method='raise')(dummy))\n    # but with method 'pass', there is neither SkipTest nor AssertionError.\n    # Instead the function call is just skipped:\n    skip_if(cond=True, method='pass')(dummy)\n    # But if condition is False, the original function is still called:\n    assert_raises(AssertionError, skip_if(cond=False, method='pass')(dummy))\n\n\ndef test_skip_known_failure():\n\n    # Note: we can't test the switch \"datalad.tests.knownfailures.skip\"\n    # directly, since it was evaluated in the decorator already. So we need\n    # to have different assertions in this test based on config and have it\n    # tested across builds, which use different settings for that switch.\n\n    @skip_known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n    switch = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n\n    if switch:\n        # if skipping is enabled, we shouldn't see the exception:\n        failing()\n    else:\n        # if it's disabled, failing() is executed and therefore exception\n        # is raised:\n        assert_raises(AssertionError, failing)\n\n\ndef test_known_failure():\n\n    @known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n\n    skip = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n    probe = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if skip:\n        # skipping takes precedence over probing\n        failing()\n    elif probe:\n        # if we probe a known failure it's okay to fail:\n        failing()\n    else:\n        # not skipping and not probing results in the original failure:\n        assert_raises(AssertionError, failing)\n\n\ndef test_known_failure_v6():\n\n    @known_failure_v6\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n\n    v6 = cfg.obtain(\"datalad.repo.version\") == 6\n    skip = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n    probe = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if v6:\n        if skip:\n            # skipping takes precedence over probing\n            failing()\n        elif probe:\n            # if we probe a known failure it's okay to fail:\n            failing()\n        else:\n            # not skipping and not probing results in the original failure:\n            assert_raises(AssertionError, failing)\n\n    else:\n        # behaves as if it wasn't decorated at all, no matter what\n        assert_raises(AssertionError, failing)\n\n\nfrom datalad.utils import read_csv_lines\n\n\ndef test_known_failure_direct_mode():\n    # Decorator is deprecated now and that is what we check\n    from .utils import known_failure_direct_mode\n\n    x = []\n    with swallow_logs(new_level=logging.WARNING) as cml:\n        @known_failure_direct_mode\n        def failing():\n            x.append('ok')\n            raise AssertionError(\"Failed\")\n\n        assert_raises(AssertionError, failing)  # nothing is swallowed\n        eq_(x, ['ok'])  # everything runs\n        assert_in(\"Direct mode support is deprecated\", cml.out)\n\n\n@with_tempfile(content=\"h1 h2\\nv1 2\\nv2 3\")\ndef test_read_csv_lines_basic(infile):\n    # Just a basic test, next one with unicode\n    gen = read_csv_lines(infile)\n    ok_generator(gen)\n    eq_(\n        list(gen),\n        [\n            {u'h1': u'v1', u'h2': u'2'},\n            {u'h1': u'v2', u'h2': u'3'},\n        ]\n    )\n\n\n@with_tempfile(content=u\"h1\\th2\\nv1\\tдата\".encode('utf-8'))\ndef test_read_csv_lines_tsv_unicode(infile):\n    # Just a basic test, next one with unicode\n    gen = read_csv_lines(infile)\n    ok_generator(gen)\n    eq_(\n        list(gen),\n        [\n            {u'h1': u'v1', u'h2': u'дата'},\n        ]\n    )\n\n\n@with_tempfile(content=u\"h1\\nv1\\nv2\")\ndef test_read_csv_lines_one_column(infile):\n    # Just a basic test, next one with unicode\n    eq_(\n        list(read_csv_lines(infile)),\n        [\n            {u'h1': u'v1'},\n            {u'h1': u'v2'},\n        ]\n    )\n\n\ndef _get_testm_tree(ind):\n    \"\"\"Generate a fake package with submodules\n\n    We need to increment index for different tests since otherwise e.g.\n    import_modules fails to import submodule if first import_module_from_file\n    imports that one\n    \"\"\"\n    return {\n        'dltestm%d' % ind: {\n            '__init__.py': '',\n            'dlsub1': {'__init__.py': 'var = 1'},\n            'dlsub2.py': 'var = 2'}\n    }\n\n@with_tree(tree=_get_testm_tree(1))\ndef test_import_modules(topdir):\n    try:\n        sys.path.append(topdir)\n        mods = import_modules(['dlsub1', 'bogus'], 'dltestm1')\n    finally:\n        sys.path.pop(sys.path.index(topdir))\n    eq_(len(mods), 1)\n    eq_(mods[0].__name__, 'dltestm1.dlsub1')\n\n\n@with_tree(tree=_get_testm_tree(2))\ndef test_import_module_from_file(topdir):\n    with assert_raises(AssertionError):\n        # we support only submodule files ending with .py ATM. TODO\n        import_module_from_file(op.join(topdir, 'dltestm2', 'dlsub1'))\n\n    dlsub2_path = op.join(topdir, 'dltestm2', 'dlsub2.py')\n    mod = import_module_from_file(dlsub2_path)\n    eq_(mod.__name__, 'dlsub2')  # we are not asking to import as submod of the dltestm1\n    assert_in('dlsub2', sys.modules)\n\n    try:\n        sys.path.append(topdir)\n        import dltestm2\n        mod = import_module_from_file(dlsub2_path, pkg=dltestm2)\n        eq_(mod.__name__, 'dltestm2.dlsub2')\n        assert_in('dltestm2.dlsub2', sys.modules)\n    finally:\n        sys.path.pop(sys.path.index(topdir))\n\n\ndef test_import_modules_fail():\n    # test that we log failures correctly\n    failures = []\n    import_modules(['bogus'], 'datalad', 'Fail {package}.{module}', failures.append)\n    eq_(len(failures), 1)\n    ok_startswith(failures[0], \"Fail datalad.bogus: No module\")\n\n\n# Should be the last one since as discovered in NICEMAN might screw up coverage\ndef test_line_profile():\n    skip_if_no_module('line_profiler')\n\n    @line_profile\n    def f(j):\n        i = j + 1  # xyz\n        return i\n\n    with swallow_outputs() as cmo:\n        assert_equal(f(3), 4)\n        assert_equal(cmo.err, '')\n        assert_in('i = j + 1  # xyz', cmo.out)\n\n\n@with_tempfile(mkdir=True)\ndef test_dlabspath(path):\n    if not has_symlink_capability():\n        raise SkipTest\n    # initially ran into on OSX https://github.com/datalad/datalad/issues/2406\n    opath = opj(path, \"origin\")\n    os.makedirs(opath)\n    lpath = opj(path, \"linked\")\n    os.symlink('origin', lpath)\n    for d in opath, lpath:\n        # regardless under which directory, all results should not resolve\n        # anything\n        eq_(d, dlabspath(d))\n        # in the root of ds\n        with chpwd(d):\n            eq_(dlabspath(\"bu\"), opj(d, \"bu\"))\n            eq_(dlabspath(\"./bu\"), opj(d, \"./bu\"))  # we do not normpath by default\n            eq_(dlabspath(\"./bu\", norm=True), opj(d, \"bu\"))\n\n\n@with_tree({'1': 'content', 'd': {'2': 'more'}})\ndef test_get_open_files(p):\n    skip_if_no_module('psutil')\n    eq_(get_open_files(p), {})\n    f1 = opj(p, '1')\n    subd = opj(p, 'd')\n    with open(f1) as f:\n        # since lsof does not care about PWD env var etc, paths\n        # will not contain symlinks, we better realpath them\n        # all before comparison\n        eq_(get_open_files(p, log_open=40)[op.realpath(f1)].pid,\n            os.getpid())\n\n    assert not get_open_files(subd)\n    # if we start a process within that directory, should get informed\n    from subprocess import Popen, PIPE\n    from time import time\n    t0 = time()\n    proc = Popen([sys.executable, '-c',\n                  r'import sys; sys.stdout.write(\"OK\\n\"); sys.stdout.flush();'\n                  r'import time; time.sleep(10)'],\n                 stdout=PIPE,\n                 cwd=subd)\n    # Assure that it started and we read the OK\n    eq_(assure_unicode(proc.stdout.readline().strip()), u\"OK\")\n    assert time() - t0 < 5 # that we were not stuck waiting for process to finish\n    eq_(get_open_files(p)[op.realpath(subd)].pid, proc.pid)\n    eq_(get_open_files(subd)[op.realpath(subd)].pid, proc.pid)\n    proc.terminate()\n    assert not get_open_files(subd)\n\n\ndef test_map_items():\n    def add10(x):\n        return x + 10\n    eq_(map_items(add10, {2: 3}), {12: 13})\n\n    class Custom(object):\n        \"\"\"For testing with custom items possibly of varying length etc\"\"\"\n        def __init__(self, items):\n            self._items = list(items)\n\n        def items(self):\n            return self._items\n\n    c = Custom([(1,), (2, 3), (4, 5, 6)])\n    c_mapped = map_items(add10, c)\n    assert type(c) is type(c_mapped)\n    eq_(c_mapped.items(), [(11,), (12, 13), (14, 15, 16)])\n\n\ndef test_CMD_MAX_ARG():\n    # 100 is arbitrarily large small integer ;)\n    # if fails -- we are unlikely to be able to work on this system\n    # and something went really wrong!\n    assert_greater(CMD_MAX_ARG, 100)\n\n\n@with_tempfile(mkdir=True)\ndef test_create_tree(path):\n    content = u\"мама мыла раму\"\n    create_tree(path, OrderedDict([\n        ('1', content),\n        ('sd', OrderedDict(\n            [\n            # right away an obscure case where we have both 1 and 1.gz\n                ('1', content*2),\n                ('1.gz', content*3),\n            ]\n        )),\n    ]))\n    ok_file_has_content(op.join(path, '1'), content)\n    ok_file_has_content(op.join(path, 'sd', '1'), content*2)\n    ok_file_has_content(op.join(path, 'sd', '1.gz'), content*3, decompress=True)\n\n\ndef test_never_fail():\n\n    @never_fail\n    def iamok(arg):\n        return arg\n    eq_(iamok(1), 1)\n\n    @never_fail\n    def ifail(arg):\n        raise ValueError\n    eq_(ifail(1), None)\n\n    with patch.dict('os.environ', {'DATALAD_ALLOW_FAIL': '1'}):\n        # decision to create failing or not failing function\n        # is done at the time of decoration\n        @never_fail\n        def ifail2(arg):\n            raise ValueError\n\n        assert_raises(ValueError, ifail2, 1)\n\n\n@with_tempfile\ndef test_is_interactive(fout):\n    # must not fail if one of the streams is no longer open:\n    # https://github.com/datalad/datalad/issues/3267\n    from ..cmd import Runner\n\n    bools = [\"False\", \"True\"]\n\n    def get_interactive(py_pre=\"\", **run_kwargs):\n        out, err = Runner().run(\n            [sys.executable,\n             \"-c\",\n             py_pre +\n             'from datalad.utils import is_interactive; '\n             'f = open(%r, \"w\"); '\n             'f.write(str(is_interactive())); '\n             'f.close()'\n             % fout\n             ],\n            **run_kwargs\n        )\n        with open(fout) as f:\n            out = f.read()\n        assert_in(out, bools)\n        return bool(bools.index(out))\n\n    # we never request for pty in our Runner, so can't be interactive\n    eq_(get_interactive(), False)\n    # and it must not crash if smth is closed\n    for o in ('stderr', 'stdin', 'stdout'):\n        eq_(get_interactive(\"import sys; sys.%s.close(); \" % o), False)\n\n",
            "new_file_content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# -*- coding: utf-8 -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"Test testing utilities\n\n\"\"\"\n\nimport os, os.path as op\nimport shutil\nimport sys\nimport logging\nfrom unittest.mock import patch\nimport builtins\n\nfrom operator import itemgetter\nfrom os.path import dirname, normpath, pardir, basename\nfrom os.path import isabs, expandvars, expanduser\nfrom collections import OrderedDict\n\nfrom ..utils import updated\nfrom os.path import join as opj, abspath, exists\nfrom ..utils import (\n    rotree, swallow_outputs, swallow_logs, setup_exceptionhook, md5sum\n)\nfrom ..utils import getpwd, chpwd\nfrom ..utils import get_path_prefix\nfrom ..utils import auto_repr\nfrom ..utils import find_files\nfrom ..utils import is_interactive\nfrom ..utils import line_profile\nfrom ..utils import not_supported_on_windows\nfrom ..utils import file_basename\nfrom ..utils import expandpath, is_explicit_path\nfrom ..utils import assure_unicode\nfrom ..utils import knows_annex\nfrom ..utils import any_re_search\nfrom ..utils import unique\nfrom ..utils import all_same\nfrom ..utils import partition\nfrom ..utils import get_func_kwargs_doc\nfrom ..utils import make_tempfile\nfrom ..utils import on_windows\nfrom ..utils import _path_\nfrom ..utils import get_timestamp_suffix\nfrom ..utils import get_trace\nfrom ..utils import get_dataset_root\nfrom ..utils import better_wraps\nfrom ..utils import path_startswith\nfrom ..utils import path_is_subpath\nfrom ..utils import dlabspath\nfrom ..utils import safe_print\nfrom ..utils import generate_chunks\nfrom ..utils import disable_logger\nfrom ..utils import import_modules, import_module_from_file\nfrom ..utils import get_open_files\nfrom ..utils import map_items\nfrom ..utils import unlink\nfrom ..utils import CMD_MAX_ARG\nfrom ..utils import create_tree\nfrom ..utils import never_fail\nfrom ..utils import Path\n\nfrom ..support.annexrepo import AnnexRepo\n\nfrom nose.tools import (\n    assert_equal,\n    assert_false,\n    assert_greater,\n    assert_true,\n    eq_,\n    ok_,\n)\nfrom datalad.tests.utils import nok_, assert_re_in\n\nfrom .utils import with_tempfile, assert_in, with_tree\nfrom .utils import SkipTest\nfrom .utils import assert_cwd_unchanged, skip_if_on_windows\nfrom .utils import assure_dict_from_str, assure_list_from_str\nfrom .utils import assure_unicode\nfrom .utils import as_unicode\nfrom .utils import assure_bool\nfrom .utils import assure_iter\nfrom .utils import assure_list\nfrom .utils import ok_generator\nfrom .utils import assert_not_in\nfrom .utils import assert_raises\nfrom .utils import ok_startswith\nfrom .utils import skip_if_no_module\nfrom .utils import (\n    probe_known_failure, skip_known_failure, known_failure, known_failure_v6,\n    skip_if,\n    ok_file_has_content,\n    known_failure_windows,\n    has_symlink_capability,\n)\nfrom .utils import OBSCURE_FILENAME\n\n\ndef test_get_func_kwargs_doc():\n    def some_func(arg1, kwarg1=None, kwarg2=\"bu\"):\n        return\n    eq_(get_func_kwargs_doc(some_func), ['arg1', 'kwarg1', 'kwarg2'])\n\n\ndef test_better_wraps():\n    from functools import wraps\n    from datalad.utils import getargspec\n\n    def wraps_decorator(func):\n        @wraps(func)\n        def new_func(*args, **kwargs):\n            return func(*args, **kwargs)\n\n        return new_func\n\n    def better_decorator(func):\n        @better_wraps(func)\n        def new_func(*args, **kwargs):\n            return func(*args, **kwargs)\n\n        return new_func\n\n    @wraps_decorator\n    def function1(a, b, c):\n        return \"function1\"\n\n    @better_decorator\n    def function2(a, b, c):\n        return \"function2\"\n\n    eq_(\"function1\", function1(1, 2, 3))\n    eq_(getargspec(function1)[0], [])\n    eq_(\"function2\", function2(1, 2, 3))\n    eq_(getargspec(function2)[0], ['a', 'b', 'c'])\n\n\n@with_tempfile(mkdir=True)\ndef test_rotree(d):\n    d2 = opj(d, 'd1', 'd2')  # deep nested directory\n    f = opj(d2, 'f1')\n    os.makedirs(d2)\n    with open(f, 'w') as f_:\n        f_.write(\"LOAD\")\n    with swallow_logs():\n        ar = AnnexRepo(d2)\n    rotree(d)\n    # we shouldn't be able to delete anything UNLESS in \"crippled\" situation:\n    # root, or filesystem is FAT etc\n    # Theoretically annex should declare FS as crippled when ran as root, but\n    # see http://git-annex.branchable.com/bugs/decides_that_FS_is_crippled_\n    # under_cowbuilder___40__symlinks_supported_etc__41__/#comment-60c3cbe2710d6865fb9b7d6e247cd7aa\n    # so explicit 'or'\n    if not (ar.is_crippled_fs() or (os.getuid() == 0)):\n        assert_raises(OSError, os.unlink, f)          # OK to use os.unlink\n        assert_raises(OSError, unlink, f)   # and even with waiting and trying!\n        assert_raises(OSError, shutil.rmtree, d)\n        # but file should still be accessible\n        with open(f) as f_:\n            eq_(f_.read(), \"LOAD\")\n    # make it RW\n    rotree(d, False)\n    unlink(f)\n    shutil.rmtree(d)\n\n\ndef test_swallow_outputs():\n    with swallow_outputs() as cm:\n        eq_(cm.out, '')\n        sys.stdout.write(\"out normal\")\n        sys.stderr.write(\"out error\")\n        eq_(cm.out, 'out normal')\n        sys.stdout.write(\" and more\")\n        eq_(cm.out, 'out normal and more')  # incremental\n        eq_(cm.err, 'out error')\n        eq_(cm.err, 'out error')  # the same value if multiple times\n\n\n@with_tempfile\ndef test_swallow_logs(logfile):\n    lgr = logging.getLogger('datalad')\n    with swallow_logs(new_level=9) as cm:\n        eq_(cm.out, '')\n        lgr.log(8, \"very heavy debug\")\n        eq_(cm.out, '')  # not even visible at level 9\n        lgr.log(9, \"debug1\")\n        eq_(cm.out, '[Level 9] debug1\\n')  # not even visible at level 9\n        lgr.info(\"info\")\n        # not even visible at level 9\n        eq_(cm.out, '[Level 9] debug1\\n[INFO] info\\n')\n    with swallow_logs(new_level=9, file_=logfile) as cm:\n        eq_(cm.out, '')\n        lgr.info(\"next info\")\n    from datalad.tests.utils import ok_file_has_content\n    ok_file_has_content(logfile, \"[INFO] next info\", strip=True)\n\n\ndef test_swallow_logs_assert():\n    lgr = logging.getLogger('datalad.tests')\n    with swallow_logs(new_level=9) as cm:\n        # nothing was logged so should fail\n        assert_raises(AssertionError, cm.assert_logged)\n        lgr.info(\"something\")\n        cm.assert_logged(\"something\")\n        cm.assert_logged(level=\"INFO\")\n        cm.assert_logged(\"something\", level=\"INFO\")\n\n        # even with regex = False should match above\n        cm.assert_logged(\"something\", regex=False)\n        cm.assert_logged(level=\"INFO\", regex=False)\n        cm.assert_logged(\"something\", level=\"INFO\", regex=False)\n\n        # different level\n        assert_raises(AssertionError,\n                      cm.assert_logged, \"something\", level=\"DEBUG\")\n        assert_raises(AssertionError, cm.assert_logged, \"else\")\n\n        cm.assert_logged(\"some.hing\", level=\"INFO\")  # regex ;-)\n        # does match\n        assert_raises(AssertionError,\n                      cm.assert_logged, \"ome.hing\", level=\"INFO\")\n        # but we can change it\n        cm.assert_logged(\"some.hing\", level=\"INFO\", match=False)\n    # and we can continue doing checks after we left the cm block\n    cm.assert_logged(\"some.hing\", level=\"INFO\", match=False)\n    # and we indeed logged something\n    cm.assert_logged(match=False)\n\n\ndef test_disable_logger():\n\n    # get a logger hierarchy:\n    lgr_top = logging.getLogger('datalad')\n    lgr_middle = logging.getLogger('datalad.tests')\n    lgr_bottom = logging.getLogger('datalad.tests.utils')\n\n    with swallow_logs(new_level=logging.DEBUG) as cml:\n        with disable_logger():  # default: 'datalad':\n            lgr_top.debug(\"log sth at top level\")\n            lgr_middle.debug(\"log sth at mid level\")\n            lgr_bottom.debug(\"log sth at bottom level\")\n        # nothing logged:\n        assert_raises(AssertionError, cml.assert_logged)\n\n    # again, but pass in the logger at mid level:\n    with swallow_logs(new_level=logging.DEBUG) as cml:\n        with disable_logger(lgr_middle):\n            lgr_top.debug(\"log sth at top level\")\n            lgr_middle.debug(\"log sth at mid level\")\n            lgr_bottom.debug(\"log sth at bottom level\")\n        # top level unaffected:\n        cml.assert_logged(\"log sth at top level\", level=\"DEBUG\", regex=False)\n        # but both of the lower ones don't log anything:\n        assert_raises(AssertionError, cml.assert_logged, \"log sth at mid level\")\n        assert_raises(AssertionError, cml.assert_logged, \"log sth at bottom level\")\n\n\ndef _check_setup_exceptionhook(interactive):\n    old_exceptionhook = sys.excepthook\n\n    post_mortem_tb = []\n\n    def our_post_mortem(tb):\n        post_mortem_tb.append(tb)\n\n    with patch('sys.excepthook'), \\\n            patch('datalad.utils.is_interactive', lambda: interactive), \\\n            patch('pdb.post_mortem', our_post_mortem):\n        setup_exceptionhook()\n        our_exceptionhook = sys.excepthook\n        ok_(old_exceptionhook != our_exceptionhook)\n        with swallow_logs() as cml, swallow_outputs() as cmo:\n            # we need to call our_exceptionhook explicitly b/c nose\n            # swallows all Exceptions and hook never gets executed\n            try:\n                raise RuntimeError\n            except Exception as e:  # RuntimeError:\n                type_, value_, tb_ = sys.exc_info()\n            our_exceptionhook(type_, value_, tb_)\n            # Happens under tox environment but not in manually crafted\n            # ones -- not yet sure what it is about but --dbg does work\n            # with python3 so lettting it skip for now\n            raise SkipTest(\n                \"TODO: Not clear why in PY3 calls cleanup if we try to \"\n                \"access the beast\"\n            )\n            assert_in('Traceback (most recent call last)', cmo.err)\n            assert_in('in _check_setup_exceptionhook', cmo.err)\n            if interactive:\n                assert_equal(post_mortem_tb[0], tb_)\n            else:\n                assert_equal(post_mortem_tb, [])\n                # assert_in('We cannot setup exception hook', cml.out)\n\n    eq_(old_exceptionhook, sys.excepthook)\n\n\ndef test_setup_exceptionhook():\n    for tval in [True, False]:\n        yield _check_setup_exceptionhook, tval\n\n\ndef test_md5sum():\n    # just a smoke (encoding/decoding) test for md5sum\n    _ = md5sum(__file__)\n\n\n@with_tree([('1.tar.gz', (('1 f.txt', '1 f load'),))])\ndef test_md5sum_archive(d):\n    # just a smoke (encoding/decoding) test for md5sum\n    _ = md5sum(opj(d, '1.tar.gz'))\n\n\ndef test_updated():\n    d = {}\n    eq_(updated(d, {1: 2}), {1: 2})\n    eq_(d, {})\n\n    d = {'a': 'b'}\n    eq_(updated(d, ((0, 1), (2, 3))), {0: 1, 'a': 'b', 2: 3})\n    eq_(d, {'a': 'b'})\n\n    # and that it would maintain the type\n    d = OrderedDict(((99, 0), ('z', 0), ('a', 0)))\n    d_ = updated(d, {0: 1})\n    ok_(isinstance(d_, OrderedDict))\n    eq_(d_, OrderedDict(((99, 0), ('z', 0), ('a', 0), (0, 1))))\n\n\ndef test_get_local_file_url_windows():\n    raise SkipTest(\"TODO\")\n\n\n@assert_cwd_unchanged\ndef test_getpwd_basic():\n    pwd = getpwd()\n    ok_(isabs(pwd))\n    eq_(os.getcwd(), abspath(pwd))\n\n    # that we do not chdir anywhere if None provided\n    with patch('os.chdir') as oschdir:\n        with chpwd(None):\n            eq_(getpwd(), pwd)\n        assert_false(oschdir.called)\n\n\n@assert_cwd_unchanged(ok_to_chdir=True)\n@with_tempfile(mkdir=True)\ndef test_getpwd_change_mode(tdir):\n    from datalad import utils\n    if utils._pwd_mode != 'PWD':\n        raise SkipTest(\"Makes sense to be tested only in PWD mode, \"\n                       \"but we seems to be beyond that already\")\n    # The evil plain chdir call\n    os.chdir(tdir)\n    # Just testing the logic of switching to cwd mode and issuing a warning\n    with swallow_logs(new_level=logging.WARNING) as cml:\n        pwd = getpwd()\n        eq_(pwd, os.path.realpath(pwd))  # might have symlinks, thus realpath\n    assert_in(\"symlinks in the paths will be resolved\", cml.out)\n    eq_(utils._pwd_mode, 'cwd')\n\n\n@skip_if_on_windows\n@with_tempfile(mkdir=True)\n@assert_cwd_unchanged\ndef test_getpwd_symlink(tdir):\n    sdir = opj(tdir, 's1')\n    pwd_orig = getpwd()\n    os.symlink('.', sdir)\n    s1dir = opj(sdir, 's1')\n    s2dir = opj(sdir, 's2')\n    try:\n        chpwd(sdir)\n        pwd = getpwd()\n        eq_(pwd, sdir)\n        chpwd('s1')\n        eq_(getpwd(), s1dir)\n        chpwd('.')\n        eq_(getpwd(), s1dir)\n        chpwd('..')\n        eq_(getpwd(), sdir)\n    finally:\n        chpwd(pwd_orig)\n\n    # test context handler way of use\n    with chpwd(s1dir):\n        eq_(getpwd(), s1dir)\n    eq_(getpwd(), pwd_orig)\n\n    assert_false(exists(s2dir))\n    with assert_raises(OSError):\n        with chpwd(s2dir):\n            pass\n    with chpwd(s2dir, mkdir=True):\n        ok_(exists(s2dir))\n        eq_(getpwd(), s2dir)\n\n\n@with_tempfile(mkdir=True)\ndef test_chpwd_obscure_name(topdir):\n    path = op.join(topdir, OBSCURE_FILENAME)\n    os.mkdir(path)\n    # Just check that call doesn't fail.\n    with chpwd(path):\n        pass\n\n\ndef test_auto_repr():\n\n    class WithoutReprClass:\n        def __init__(self):\n            self.a = \"does not matter\"\n\n    @auto_repr\n    class buga:\n        def __init__(self):\n            self.a = 1\n            self.b = list(range(100))\n            self.c = WithoutReprClass()\n            self._c = \"protect me\"\n\n        def some(self):\n            return \"some\"\n\n    assert_equal(\n        repr(buga()),\n        \"buga(a=1, b=<<[0, 1, 2, 3, 4++372 chars++ 99]>>, c=<WithoutReprClass>)\"\n    )\n    assert_equal(buga().some(), \"some\")\n\n\ndef test_assure_iter():\n    s = {1}\n    assert assure_iter(None, set) == set()\n    assert assure_iter(1, set) == s\n    assert assure_iter(1, list) == [1]\n    assert assure_iter(s, set) is s\n    assert assure_iter(s, set, copy=True) is not s\n\n\ndef test_assure_list_copy():\n    l = [1]\n    assert assure_list(l) is l\n    assert assure_list(l, copy=True) is not l\n\n\ndef test_assure_list_from_str():\n    assert_equal(assure_list_from_str(''), None)\n    assert_equal(assure_list_from_str([]), None)\n    assert_equal(assure_list_from_str('somestring'), ['somestring'])\n    assert_equal(assure_list_from_str('some\\nmultiline\\nstring'), ['some', 'multiline', 'string'])\n    assert_equal(assure_list_from_str(['something']), ['something'])\n    assert_equal(assure_list_from_str(['a', 'listof', 'stuff']), ['a', 'listof', 'stuff'])\n\n\ndef test_assure_dict_from_str():\n    assert_equal(assure_dict_from_str(''), None)\n    assert_equal(assure_dict_from_str({}), None)\n    target_dict = dict(\n        __ac_name='{user}', __ac_password='{password}',\n        cookies_enabled='', submit='Log in'\n    )\n    string = '__ac_name={user}\\n__ac_password={password}\\nsubmit=Log ' \\\n               'in\\ncookies_enabled='\n    assert_equal(assure_dict_from_str(string), target_dict)\n    assert_equal(assure_dict_from_str(\n        target_dict),\n        target_dict)\n\n\ndef test_assure_bool():\n    for values, t in [\n        (['True', 1, '1', 'yes', 'on'], True),\n        (['False', 0, '0', 'no', 'off'], False)\n    ]:\n        for v in values:\n            eq_(assure_bool(v), t)\n    assert_raises(ValueError, assure_bool, \"unknown\")\n\n\ndef test_generate_chunks():\n    ok_generator(generate_chunks([1], 1))\n    eq_(list(generate_chunks([1], 1)), [[1]])\n    eq_(list(generate_chunks([1], 2)), [[1]])\n    eq_(list(generate_chunks([1, 2, 3], 2)), [[1, 2], [3]])\n    # type is preserved\n    eq_(list(generate_chunks((1, 2, 3), 2)), [(1, 2), (3,)])\n    # no hangers\n    eq_(list(generate_chunks((1, 2, 3, 4), 2)), [(1, 2), (3, 4)])\n    assert_raises(AssertionError, list, generate_chunks([1], 0))\n\n\ndef test_any_re_search():\n    assert_true(any_re_search('a', 'a'))\n    assert_true(any_re_search('a', 'bab'))\n    assert_false(any_re_search('^a', 'bab'))\n    assert_true(any_re_search(['b', '.ab'], 'bab'))\n    assert_false(any_re_search(['^b', 'bab'], 'ab'))\n\n\ndef test_find_files():\n    tests_dir = dirname(__file__)\n    proj_dir = normpath(opj(dirname(__file__), pardir))\n\n    ff = find_files('.*', proj_dir)\n    ok_generator(ff)\n    files = list(ff)\n    assert(len(files) > 10)  # we have more than 10 test files here\n    assert_in(opj(tests_dir, 'test_utils.py'), files)\n    # and no directories should be mentioned\n    assert_not_in(tests_dir, files)\n\n    ff2 = find_files('.*', proj_dir, dirs=True)\n    files2 = list(ff2)\n    assert_in(opj(tests_dir, 'test_utils.py'), files2)\n    assert_in(tests_dir, files2)\n\n    # now actually matching the path\n    ff3 = find_files(\n        r'.*\\\\test_.*\\.py$' if on_windows else r'.*/test_.*\\.py$',\n        proj_dir, dirs=True)\n    files3 = list(ff3)\n    assert_in(opj(tests_dir, 'test_utils.py'), files3)\n    assert_not_in(tests_dir, files3)\n    for f in files3:\n        ok_startswith(basename(f), 'test_')\n\n\n@with_tree(tree={\n    '.git': {\n        '1': '2'\n    },\n    'd1': {\n        '.git': 'possibly a link from submodule'\n    },\n    'git': 'just a file'\n})\ndef test_find_files_exclude_vcs(repo):\n    ff = find_files('.*', repo, dirs=True)\n    files = list(ff)\n    assert_equal({basename(f) for f in files}, {'d1', 'git'})\n    assert_not_in(opj(repo, '.git'), files)\n\n    ff = find_files('.*', repo, dirs=True, exclude_vcs=False)\n    files = list(ff)\n    assert_equal({basename(f) for f in files}, {'d1', 'git', '.git', '1'})\n    assert_in(opj(repo, '.git'), files)\n\n\ndef test_not_supported_on_windows():\n    with patch('datalad.utils.on_windows', True):\n        assert_raises(NotImplementedError, not_supported_on_windows)\n        assert_raises(NotImplementedError, not_supported_on_windows, \"msg\")\n\n    with patch('datalad.utils.on_windows', False):\n        assert_equal(not_supported_on_windows(), None)\n        assert_equal(not_supported_on_windows(\"msg\"), None)\n\n\ndef test_file_basename():\n    eq_(file_basename('1'), '1')\n    eq_(file_basename('d1/1'), '1')\n    eq_(file_basename('/d1/1'), '1')\n    eq_(file_basename('1.'), '1.')\n    eq_(file_basename('1.tar.gz'), '1')\n    eq_(file_basename('1.Tar.gz'), '1')\n    eq_(file_basename('1._bak.gz'), '1')\n    eq_(file_basename('1.tar.gz', return_ext=True), ('1', 'tar.gz'))\n    eq_(file_basename('/tmp/1.tar.gz'), '1')\n    eq_(file_basename('/tmp/1.longish.gz'), '1.longish')\n    eq_(file_basename('1_R1.1.1.tar.gz'), '1_R1.1.1')\n    eq_(file_basename('ds202_R1.1.1.tgz'), 'ds202_R1.1.1')\n\n\ndef test_expandpath():\n    eq_(expandpath(\"some\", False), expanduser('some'))\n    eq_(expandpath(\"some\", False), expandvars('some'))\n    assert_true(isabs(expandpath('some')))\n    # this may have to go because of platform issues\n    eq_(expandpath(\"$HOME\"), expanduser('~'))\n\n\ndef test_is_explicit_path():\n    # by default expanded paths are absolute, hence explicit\n    assert_true(is_explicit_path(expandpath('~')))\n    assert_false(is_explicit_path(\"here\"))\n\n\n@with_tempfile\n@with_tempfile\ndef test_knows_annex(here, there):\n    from datalad.support.gitrepo import GitRepo\n    from datalad.support.annexrepo import AnnexRepo\n    GitRepo(path=here, create=True)\n    assert_false(knows_annex(here))\n    AnnexRepo(path=here, create=True)\n    assert_true(knows_annex(here))\n    GitRepo.clone(path=there, url=here, create=True)\n    assert_true(knows_annex(there))\n\n\ndef test_make_tempfile():\n    # check if mkdir, content conflict caught\n    with assert_raises(ValueError):\n        with make_tempfile(content=\"blah\", mkdir=True):  # pragma: no cover\n            pass\n\n\ndef test_unique():\n    eq_(unique(range(3)), [0, 1, 2])\n    eq_(unique(range(3), reverse=True), [0, 1, 2])\n    eq_(unique((1, 0, 1, 3, 2, 0, 1)), [1, 0, 3, 2])\n    eq_(unique((1, 0, 1, 3, 2, 0, 1), reverse=True), [3, 2, 0, 1])\n    eq_(unique([]), [])\n    eq_(unique([], reverse=True), [])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)]), [(1, 2), (1,), (0, 3)])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)], reverse=True),\n        [(1,), (1, 2), (0, 3)])\n\n    # with a key now\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)],\n               key=itemgetter(0)), [(1, 2), (0, 3)])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)],\n               key=itemgetter(0), reverse=True), [(1, 2), (0, 3)])\n\n    eq_(unique([(1, 2), (1, 3), (1, 2), (0, 3)],\n               key=itemgetter(1)), [(1, 2), (1, 3)])\n    eq_(unique([(1, 2), (1, 3), (1, 2), (0, 3)],\n               key=itemgetter(1), reverse=True), [(1, 2), (0, 3)])\n\n\ndef test_all_same():\n    ok_(all_same([0, 0, 0]))\n    ok_(not all_same([0, 0, '0']))\n    ok_(not all_same([]))\n\n    def never_get_to_not_needed():\n        yield 'a'\n        yield 'a'\n        yield 'b'\n        raise ValueError(\"Should not get here since on b should return\")\n\n    ok_(not all_same(never_get_to_not_needed()))\n\n    def gen1(n):\n        for x in range(n):\n            yield 'a'\n    ok_(not all_same(gen1(0)))\n    ok_(all_same(gen1(1)))\n    ok_(all_same(gen1(2)))\n    ok_(all_same(gen1(10)))\n\n\ndef test_partition():\n    def fn(*args, **kwargs):\n        left, right = partition(*args, **kwargs)\n        return list(left), list(right)\n\n    eq_(fn([False, True, False]),\n        ([False, False], [True]))\n\n    eq_(fn([1, 5, 4, 10], lambda x: x > 4),\n        ([1, 4], [5, 10]))\n\n    eq_(fn([1, 5, 4, 10], lambda x: x < 0),\n        ([1, 5, 4, 10], []))\n\n\ndef test_path_():\n    eq_(_path_('a'), 'a')\n    if on_windows:\n        eq_(_path_('a/b'), r'a\\b')\n    else:\n        p = 'a/b/c'\n        assert(_path_(p) is p)  # nothing is done to it whatsoever\n        eq_(_path_(p, 'd'), 'a/b/c/d')\n\n\n@known_failure_windows\ndef test_get_timestamp_suffix():\n    # we need to patch temporarily TZ\n    import time\n    try:\n        with patch.dict('os.environ', {'TZ': 'GMT'}):\n            time.tzset()\n            # skynet DOB\n            assert_equal(get_timestamp_suffix(0), '-1970-01-01T00:00:00+0000')\n            assert_equal(get_timestamp_suffix(0, prefix=\"+\"),\n                         '+1970-01-01T00:00:00+0000')\n            # yoh found no way to mock things out and didn't want to provide\n            # explicit call to anything to get current time with the timezone,\n            # so disabling this test for now besides that it should return smth\n            # sensible ;)\n            #with patch.object(time, 'localtime', lambda: 1):\n            #    assert_equal(get_timestamp_suffix(),\n            #  '-1970-01-01T00:00:01+0000')  # skynet is 1 sec old\n            assert(get_timestamp_suffix().startswith('-'))\n    finally:\n        time.tzset()\n\n\ndef test_memoized_generator():\n    called = [0]\n\n    def g1(n):\n        \"\"\"a generator\"\"\"\n        called[0] += 1\n        for i in range(n):\n            yield i\n\n    from ..utils import saved_generator\n    ok_generator(g1(3))\n    g1_, g2_ = saved_generator(g1(3))\n    ok_generator(g1_)\n    ok_generator(g2_)\n    target = list(g1(3))\n    eq_(called[0], 1)\n    eq_(target, list(g1_))\n    eq_(called[0], 2)\n    eq_(target, list(g2_))\n    eq_(called[0], 2)  # no new call to make a generator\n    # but we can't (ab)use 2nd time\n    eq_([], list(g2_))\n\n\ndef test_assure_unicode():\n    ok_(isinstance(assure_unicode(\"m\"), str))\n    ok_(isinstance(assure_unicode('grandchild_äöü東'), str))\n    ok_(isinstance(assure_unicode(u'grandchild_äöü東'), str))\n    eq_(assure_unicode('grandchild_äöü東'), u'grandchild_äöü東')\n    # now, non-utf8\n    # Decoding could be deduced with high confidence when the string is\n    # really encoded in that codepage\n    mom_koi8r = u\"мама\".encode('koi8-r')\n    eq_(assure_unicode(mom_koi8r), u\"мама\")\n    eq_(assure_unicode(mom_koi8r, confidence=0.9), u\"мама\")\n    mom_iso8859 = u'mamá'.encode('iso-8859-1')\n    eq_(assure_unicode(mom_iso8859), u'mamá')\n    eq_(assure_unicode(mom_iso8859, confidence=0.5), u'mamá')\n    # but when we mix, it does still guess something allowing to decode:\n    mixedin = mom_koi8r + u'東'.encode('iso2022_jp') + u'東'.encode('utf-8')\n    ok_(isinstance(assure_unicode(mixedin), str))\n    # but should fail if we request high confidence result:\n    with assert_raises(ValueError):\n        assure_unicode(mixedin, confidence=0.9)\n    # For other, non string values, actually just returns original value\n    # TODO: RF to actually \"assure\" or fail??  For now hardcoding that assumption\n    assert assure_unicode(1) is 1\n\n\ndef test_pathlib_unicode():\n    eq_(str(Path(\"a\")), u\"a\")\n    eq_(str(Path(u\"β\")), u\"β\")\n\n\ndef test_as_unicode():\n    eq_(as_unicode('grandchild_äöü東'), u'grandchild_äöü東')\n    eq_(as_unicode(None), u\"\")\n    eq_(as_unicode(1), u\"1\")\n    # NOTE: u? is because result is different between PY2 (prefixes unicode repr\n    # while in PY3 is no longer needed!  So aggregation result would differ between\n    # PY2 and PY3\n    # Didn't manage to make it work in PY2\n    #TODO assert_re_in(u'\\[1, .s., u?.東.\\]', as_unicode([1, \"s\", u\"東\"]))\n    eq_(as_unicode(\"01\"), u\"01\")  # no some kind of conversion/stripping of numerals\n    with assert_raises(TypeError) as cme:\n        as_unicode(1, list)\n    assert_in(\"1 is not of any of known or provided\", str(cme.exception))\n\n\n@known_failure_windows\n@with_tempfile(mkdir=True)\ndef test_path_prefix(path):\n    eq_(get_path_prefix('/d1/d2', '/d1/d2'), '')\n    # so we are under /d1/d2 so path prefix is ..\n    eq_(get_path_prefix('/d1/d2', '/d1/d2/d3'), '..')\n    eq_(get_path_prefix('/d1/d2/d3', '/d1/d2'), 'd3')\n    # but if outside -- full path\n    eq_(get_path_prefix('/d1/d2', '/d1/d20/d3'), '/d1/d2')\n    with chpwd(path):\n        eq_(get_path_prefix('.'), '')\n        eq_(get_path_prefix('d1'), 'd1')\n        eq_(get_path_prefix('d1', 'd2'), opj(path, 'd1'))\n        eq_(get_path_prefix('..'), '..')\n\n\ndef test_get_trace():\n    assert_raises(ValueError, get_trace, [], 'boom', 'does_not_matter')\n    eq_(get_trace([('A', 'B')], 'A', 'A'), None)\n    eq_(get_trace([('A', 'B')], 'A', 'B'), [])\n    eq_(get_trace([('A', 'B')], 'A', 'C'), None)\n    eq_(get_trace([('A', 'B'),\n                   ('B', 'C')], 'A', 'C'), ['B'])\n    # order of edges doesn't matter\n    eq_(get_trace([\n        ('B', 'C'),\n        ('A', 'B')\n        ], 'A', 'C'), ['B'])\n    # mixed rubbish\n    eq_(get_trace([\n        (1, 3),\n        ('B', 'C'),\n        (None, ('schwak', 7)),\n        ('A', 'B'),\n        ], 'A', 'C'), ['B'])\n    # long\n    eq_(get_trace([\n        ('B', 'C'),\n        ('A', 'B'),\n        ('distract', 'me'),\n        ('C', 'D'),\n        ('D', 'E'),\n        ], 'A', 'E'), ['B', 'C', 'D'])\n\n\n@with_tempfile(mkdir=True)\ndef test_get_dataset_root(path):\n    eq_(get_dataset_root('/nonexistent'), None)\n    with chpwd(path):\n        repo = AnnexRepo(os.curdir, create=True)\n        subdir = opj('some', 'deep')\n        fname = opj(subdir, 'dummy')\n        os.makedirs(subdir)\n        with open(fname, 'w') as f:\n            f.write('some')\n        repo.add(fname)\n        # we can find this repo\n        eq_(get_dataset_root(os.curdir), os.curdir)\n        # and we get the type of path that we fed in\n        eq_(get_dataset_root(abspath(os.curdir)), abspath(os.curdir))\n        # subdirs are no issue\n        eq_(get_dataset_root(subdir), os.curdir)\n        # even more subdirs are no issue\n        eq_(get_dataset_root(opj(subdir, subdir)), os.curdir)\n        # non-dir paths are no issue\n        eq_(get_dataset_root(fname), os.curdir)\n\n\n@known_failure_windows\ndef test_path_startswith():\n    ok_(path_startswith('/a/b', '/a'))\n    ok_(path_startswith('/a/b', '/a/b'))\n    ok_(path_startswith('/a/b', '/a/b/'))\n    ok_(path_startswith('/a/b/', '/a/b'))\n    ok_(path_startswith('/a/b', '/'))\n    ok_(path_startswith('/aaa/b/c', '/aaa'))\n    nok_(path_startswith('/aaa/b/c', '/aa'))\n    nok_(path_startswith('/a/b', '/a/c'))\n    nok_(path_startswith('/a/b/c', '/a/c'))\n    # must not mix relative and abs\n    assert_raises(ValueError, path_startswith, 'a/b', '/a')\n    assert_raises(ValueError, path_startswith, '/a/b', 'a')\n\n\n@known_failure_windows\ndef test_path_is_subpath():\n    ok_(path_is_subpath('/a/b', '/a'))\n    ok_(path_is_subpath('/a/b/c', '/a'))\n    nok_(path_is_subpath('/a/b', '/a/b'))\n    nok_(path_is_subpath('/a/b', '/a/b/'))\n    nok_(path_is_subpath('/a/b/', '/a/b'))\n    ok_(path_is_subpath('/a/b', '/'))\n    ok_(path_is_subpath('/aaa/b/c', '/aaa'))\n    nok_(path_is_subpath('/aaa/b/c', '/aa'))\n    nok_(path_is_subpath('/a/b', '/a/c'))\n    nok_(path_is_subpath('/a/b/c', '/a/c'))\n    # must not mix relative and abs\n    assert_raises(ValueError, path_is_subpath, 'a/b', '/a')\n    assert_raises(ValueError, path_is_subpath, '/a/b', 'a')\n\n\ndef test_safe_print():\n    \"\"\"Just to test that we are getting two attempts to print\"\"\"\n\n    called = [0]\n\n    def _print(s):\n        assert_equal(s, \"bua\")\n        called[0] += 1\n        if called[0] == 1:\n            raise UnicodeEncodeError('crap', u\"\", 0, 1, 'whatever')\n\n    with patch.object(builtins, 'print', _print):\n        safe_print(\"bua\")\n    assert_equal(called[0], 2)\n\n\ndef test_probe_known_failure():\n\n    # Note: we can't test the switch \"datalad.tests.knownfailures.probe\"\n    # directly, since it was evaluated in the decorator already. So we need\n    # to have different assertions in this test based on config and have it\n    # tested across builds, which use different settings for that switch.\n\n    @probe_known_failure\n    def not_failing():\n        pass\n\n    @probe_known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n    switch = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if switch:\n        # if probing is enabled the failing is considered to be expected and\n        # therefore the decorated function doesn't actually fail:\n        failing()\n        # in opposition a function that doesn't fail raises an AssertionError:\n        assert_raises(AssertionError, not_failing)\n    else:\n        # if probing is disabled it should just fail/pass as is:\n        assert_raises(AssertionError, failing)\n        not_failing()\n\n\ndef test_skip_if():\n\n    def dummy():\n        raise AssertionError\n\n    assert_raises(AssertionError, dummy)\n    # if cond is False, call the decorated function:\n    assert_raises(AssertionError, skip_if(cond=False, method='raise')(dummy))\n    # raises SkipTest if cond is True\n    assert_raises(SkipTest, skip_if(cond=True, method='raise')(dummy))\n    # but with method 'pass', there is neither SkipTest nor AssertionError.\n    # Instead the function call is just skipped:\n    skip_if(cond=True, method='pass')(dummy)\n    # But if condition is False, the original function is still called:\n    assert_raises(AssertionError, skip_if(cond=False, method='pass')(dummy))\n\n\ndef test_skip_known_failure():\n\n    # Note: we can't test the switch \"datalad.tests.knownfailures.skip\"\n    # directly, since it was evaluated in the decorator already. So we need\n    # to have different assertions in this test based on config and have it\n    # tested across builds, which use different settings for that switch.\n\n    @skip_known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n    switch = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n\n    if switch:\n        # if skipping is enabled, we shouldn't see the exception:\n        failing()\n    else:\n        # if it's disabled, failing() is executed and therefore exception\n        # is raised:\n        assert_raises(AssertionError, failing)\n\n\ndef test_known_failure():\n\n    @known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n\n    skip = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n    probe = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if skip:\n        # skipping takes precedence over probing\n        failing()\n    elif probe:\n        # if we probe a known failure it's okay to fail:\n        failing()\n    else:\n        # not skipping and not probing results in the original failure:\n        assert_raises(AssertionError, failing)\n\n\ndef test_known_failure_v6():\n\n    @known_failure_v6\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n\n    v6 = cfg.obtain(\"datalad.repo.version\") == 6\n    skip = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n    probe = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if v6:\n        if skip:\n            # skipping takes precedence over probing\n            failing()\n        elif probe:\n            # if we probe a known failure it's okay to fail:\n            failing()\n        else:\n            # not skipping and not probing results in the original failure:\n            assert_raises(AssertionError, failing)\n\n    else:\n        # behaves as if it wasn't decorated at all, no matter what\n        assert_raises(AssertionError, failing)\n\n\nfrom datalad.utils import read_csv_lines\n\n\ndef test_known_failure_direct_mode():\n    # Decorator is deprecated now and that is what we check\n    from .utils import known_failure_direct_mode\n\n    x = []\n    with swallow_logs(new_level=logging.WARNING) as cml:\n        @known_failure_direct_mode\n        def failing():\n            x.append('ok')\n            raise AssertionError(\"Failed\")\n\n        assert_raises(AssertionError, failing)  # nothing is swallowed\n        eq_(x, ['ok'])  # everything runs\n        assert_in(\"Direct mode support is deprecated\", cml.out)\n\n\n@with_tempfile(content=\"h1 h2\\nv1 2\\nv2 3\")\ndef test_read_csv_lines_basic(infile):\n    # Just a basic test, next one with unicode\n    gen = read_csv_lines(infile)\n    ok_generator(gen)\n    eq_(\n        list(gen),\n        [\n            {u'h1': u'v1', u'h2': u'2'},\n            {u'h1': u'v2', u'h2': u'3'},\n        ]\n    )\n\n\n@with_tempfile(content=u\"h1\\th2\\nv1\\tдата\".encode('utf-8'))\ndef test_read_csv_lines_tsv_unicode(infile):\n    # Just a basic test, next one with unicode\n    gen = read_csv_lines(infile)\n    ok_generator(gen)\n    eq_(\n        list(gen),\n        [\n            {u'h1': u'v1', u'h2': u'дата'},\n        ]\n    )\n\n\n@with_tempfile(content=u\"h1\\nv1\\nv2\")\ndef test_read_csv_lines_one_column(infile):\n    # Just a basic test, next one with unicode\n    eq_(\n        list(read_csv_lines(infile)),\n        [\n            {u'h1': u'v1'},\n            {u'h1': u'v2'},\n        ]\n    )\n\n\ndef _get_testm_tree(ind):\n    \"\"\"Generate a fake package with submodules\n\n    We need to increment index for different tests since otherwise e.g.\n    import_modules fails to import submodule if first import_module_from_file\n    imports that one\n    \"\"\"\n    return {\n        'dltestm%d' % ind: {\n            '__init__.py': '',\n            'dlsub1': {'__init__.py': 'var = 1'},\n            'dlsub2.py': 'var = 2'}\n    }\n\n@with_tree(tree=_get_testm_tree(1))\ndef test_import_modules(topdir):\n    try:\n        sys.path.append(topdir)\n        mods = import_modules(['dlsub1', 'bogus'], 'dltestm1')\n    finally:\n        sys.path.pop(sys.path.index(topdir))\n    eq_(len(mods), 1)\n    eq_(mods[0].__name__, 'dltestm1.dlsub1')\n\n\n@with_tree(tree=_get_testm_tree(2))\ndef test_import_module_from_file(topdir):\n    with assert_raises(AssertionError):\n        # we support only submodule files ending with .py ATM. TODO\n        import_module_from_file(op.join(topdir, 'dltestm2', 'dlsub1'))\n\n    dlsub2_path = op.join(topdir, 'dltestm2', 'dlsub2.py')\n    mod = import_module_from_file(dlsub2_path)\n    eq_(mod.__name__, 'dlsub2')  # we are not asking to import as submod of the dltestm1\n    assert_in('dlsub2', sys.modules)\n\n    try:\n        sys.path.append(topdir)\n        import dltestm2\n        mod = import_module_from_file(dlsub2_path, pkg=dltestm2)\n        eq_(mod.__name__, 'dltestm2.dlsub2')\n        assert_in('dltestm2.dlsub2', sys.modules)\n    finally:\n        sys.path.pop(sys.path.index(topdir))\n\n\ndef test_import_modules_fail():\n    # test that we log failures correctly\n    failures = []\n    import_modules(['bogus'], 'datalad', 'Fail {package}.{module}', failures.append)\n    eq_(len(failures), 1)\n    ok_startswith(failures[0], \"Fail datalad.bogus: No module\")\n\n\n# Should be the last one since as discovered in NICEMAN might screw up coverage\ndef test_line_profile():\n    skip_if_no_module('line_profiler')\n\n    @line_profile\n    def f(j):\n        i = j + 1  # xyz\n        return i\n\n    with swallow_outputs() as cmo:\n        assert_equal(f(3), 4)\n        assert_equal(cmo.err, '')\n        assert_in('i = j + 1  # xyz', cmo.out)\n\n\n@with_tempfile(mkdir=True)\ndef test_dlabspath(path):\n    if not has_symlink_capability():\n        raise SkipTest\n    # initially ran into on OSX https://github.com/datalad/datalad/issues/2406\n    opath = opj(path, \"origin\")\n    os.makedirs(opath)\n    lpath = opj(path, \"linked\")\n    os.symlink('origin', lpath)\n    for d in opath, lpath:\n        # regardless under which directory, all results should not resolve\n        # anything\n        eq_(d, dlabspath(d))\n        # in the root of ds\n        with chpwd(d):\n            eq_(dlabspath(\"bu\"), opj(d, \"bu\"))\n            eq_(dlabspath(\"./bu\"), opj(d, \"./bu\"))  # we do not normpath by default\n            eq_(dlabspath(\"./bu\", norm=True), opj(d, \"bu\"))\n\n\n@with_tree({'1': 'content', 'd': {'2': 'more'}})\ndef test_get_open_files(p):\n    skip_if_no_module('psutil')\n    eq_(get_open_files(p), {})\n    f1 = opj(p, '1')\n    subd = opj(p, 'd')\n    with open(f1) as f:\n        # since lsof does not care about PWD env var etc, paths\n        # will not contain symlinks, we better realpath them\n        # all before comparison\n        eq_(get_open_files(p, log_open=40)[op.realpath(f1)].pid,\n            os.getpid())\n\n    assert not get_open_files(subd)\n    # if we start a process within that directory, should get informed\n    from subprocess import Popen, PIPE\n    from time import time\n    t0 = time()\n    proc = Popen([sys.executable, '-c',\n                  r'import sys; sys.stdout.write(\"OK\\n\"); sys.stdout.flush();'\n                  r'import time; time.sleep(10)'],\n                 stdout=PIPE,\n                 cwd=subd)\n    # Assure that it started and we read the OK\n    eq_(assure_unicode(proc.stdout.readline().strip()), u\"OK\")\n    assert time() - t0 < 5 # that we were not stuck waiting for process to finish\n    eq_(get_open_files(p)[op.realpath(subd)].pid, proc.pid)\n    eq_(get_open_files(subd)[op.realpath(subd)].pid, proc.pid)\n    proc.terminate()\n    assert not get_open_files(subd)\n\n\ndef test_map_items():\n    def add10(x):\n        return x + 10\n    eq_(map_items(add10, {2: 3}), {12: 13})\n\n    class Custom(object):\n        \"\"\"For testing with custom items possibly of varying length etc\"\"\"\n        def __init__(self, items):\n            self._items = list(items)\n\n        def items(self):\n            return self._items\n\n    c = Custom([(1,), (2, 3), (4, 5, 6)])\n    c_mapped = map_items(add10, c)\n    assert type(c) is type(c_mapped)\n    eq_(c_mapped.items(), [(11,), (12, 13), (14, 15, 16)])\n\n\ndef test_CMD_MAX_ARG():\n    # 100 is arbitrarily large small integer ;)\n    # if fails -- we are unlikely to be able to work on this system\n    # and something went really wrong!\n    assert_greater(CMD_MAX_ARG, 100)\n\n\n@with_tempfile(mkdir=True)\ndef test_create_tree(path):\n    content = u\"мама мыла раму\"\n    create_tree(path, OrderedDict([\n        ('1', content),\n        ('sd', OrderedDict(\n            [\n            # right away an obscure case where we have both 1 and 1.gz\n                ('1', content*2),\n                ('1.gz', content*3),\n            ]\n        )),\n    ]))\n    ok_file_has_content(op.join(path, '1'), content)\n    ok_file_has_content(op.join(path, 'sd', '1'), content*2)\n    ok_file_has_content(op.join(path, 'sd', '1.gz'), content*3, decompress=True)\n\n\ndef test_never_fail():\n\n    @never_fail\n    def iamok(arg):\n        return arg\n    eq_(iamok(1), 1)\n\n    @never_fail\n    def ifail(arg):\n        raise ValueError\n    eq_(ifail(1), None)\n\n    with patch.dict('os.environ', {'DATALAD_ALLOW_FAIL': '1'}):\n        # decision to create failing or not failing function\n        # is done at the time of decoration\n        @never_fail\n        def ifail2(arg):\n            raise ValueError\n\n        assert_raises(ValueError, ifail2, 1)\n\n\n@with_tempfile\ndef test_is_interactive(fout):\n    # must not fail if one of the streams is no longer open:\n    # https://github.com/datalad/datalad/issues/3267\n    from ..cmd import Runner\n\n    bools = [\"False\", \"True\"]\n\n    def get_interactive(py_pre=\"\", **run_kwargs):\n        out, err = Runner().run(\n            [sys.executable,\n             \"-c\",\n             py_pre +\n             'from datalad.utils import is_interactive; '\n             'f = open(%r, \"w\"); '\n             'f.write(str(is_interactive())); '\n             'f.close()'\n             % fout\n             ],\n            **run_kwargs\n        )\n        with open(fout) as f:\n            out = f.read()\n        assert_in(out, bools)\n        return bool(bools.index(out))\n\n    # we never request for pty in our Runner, so can't be interactive\n    eq_(get_interactive(), False)\n    # and it must not crash if smth is closed\n    for o in ('stderr', 'stdin', 'stdout'):\n        eq_(get_interactive(\"import sys; sys.%s.close(); \" % o), False)\n\n",
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        },
        {
            "old_file_content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\nimport collections\nimport hashlib\nimport re\nimport builtins\nimport time\n\ntry:\n    from collections.abc import Callable\nexcept ImportError:  # Python <= 3.3\n    from collections import Callable\n\nimport logging\nimport shutil\nimport os\nimport sys\nimport tempfile\nimport platform\nimport gc\nimport glob\nimport gzip\nimport string\nimport warnings\nimport wrapt\n\nfrom copy import copy as shallow_copy\nfrom contextlib import contextmanager\nfrom functools import wraps\nfrom time import sleep\nimport inspect\nfrom itertools import tee\n\nimport os.path as op\nfrom os.path import sep as dirsep\nfrom os.path import commonprefix\nfrom os.path import curdir, basename, exists, realpath, islink, join as opj\nfrom os.path import isabs, normpath, expandvars, expanduser, abspath, sep\nfrom os.path import isdir\nfrom os.path import relpath\nfrom os.path import stat\nfrom os.path import dirname\nfrom os.path import split as psplit\nimport posixpath\n\nfrom shlex import (\n    quote as shlex_quote,\n    split as shlex_split,\n)\n\n# from datalad.dochelpers import get_docstring_split\nfrom datalad.consts import TIMESTAMP_FMT\n\n\nunicode_srctypes = str, bytes\n\n\nlgr = logging.getLogger(\"datalad.utils\")\n\nlgr.log(5, \"Importing datalad.utils\")\n#\n# Some useful variables\n#\nplatform_system = platform.system().lower()\non_windows = platform_system == 'windows'\non_osx = platform_system == 'darwin'\non_linux = platform_system == 'linux'\non_msys_tainted_paths = on_windows \\\n                        and 'MSYS_NO_PATHCONV' not in os.environ \\\n                        and os.environ.get('MSYSTEM', '')[:4] in ('MSYS', 'MING')\n\n\ndef get_linux_distribution():\n    \"\"\"Compatibility wrapper for {platform,distro}.linux_distribution().\n    \"\"\"\n    if hasattr(platform, \"linux_distribution\"):\n        # Use deprecated (but faster) method if it's available.\n        with warnings.catch_warnings():\n            warnings.filterwarnings(\"ignore\", category=DeprecationWarning)\n            result = platform.linux_distribution()\n    else:\n        import distro  # We require this for Python 3.8 and above.\n        result = distro.linux_distribution(full_distribution_name=False)\n    return result\n\n\ntry:\n    linux_distribution_name, linux_distribution_release \\\n        = get_linux_distribution()[:2]\n    on_debian_wheezy = on_linux \\\n                       and linux_distribution_name == 'debian' \\\n                       and linux_distribution_release.startswith('7.')\nexcept:  # pragma: no cover\n    # MIH: IndexError?\n    on_debian_wheezy = False\n    linux_distribution_name = linux_distribution_release = None\n\n# Maximal length of cmdline string\n# Query the system and use hardcoded \"knowledge\" if None\n# probably   getconf ARG_MAX   might not be available\n# The last one would be the most conservative/Windows\nCMD_MAX_ARG_HARDCODED = 2097152 if on_linux else 262144 if on_osx else 32767\ntry:\n    CMD_MAX_ARG = os.sysconf('SC_ARG_MAX')\n    assert CMD_MAX_ARG > 0\n    if sys.version_info[:2] == (3, 4):\n        # workaround for some kind of a bug which comes up with python 3.4\n        # see https://github.com/datalad/datalad/issues/3150\n        CMD_MAX_ARG = min(CMD_MAX_ARG, CMD_MAX_ARG_HARDCODED)\nexcept Exception as exc:\n    # ATM (20181005) SC_ARG_MAX available only on POSIX systems\n    # so exception would be thrown e.g. on Windows, or\n    # somehow during Debian build for nd14.04 it is coming up with -1:\n    # https://github.com/datalad/datalad/issues/3015\n    CMD_MAX_ARG = CMD_MAX_ARG_HARDCODED\n    lgr.debug(\n        \"Failed to query or got useless SC_ARG_MAX sysconf, \"\n        \"will use hardcoded value: %s\", exc)\n# Even with all careful computations we do, due to necessity to account for\n# environment and what not, we still could not figure out \"exact\" way to\n# estimate it, but it was shown that 300k safety margin on linux was sufficient.\n# https://github.com/datalad/datalad/pull/2977#issuecomment-436264710\n# 300k is ~15%, so to be safe, and for paranoid us we will just use up to 50%\n# of the length for \"safety margin\".  We might probably still blow due to\n# env vars, unicode, etc...  so any hard limit imho is not a proper solution\nCMD_MAX_ARG = int(0.5 * CMD_MAX_ARG)\nlgr.debug(\n    \"Maximal length of cmdline string (adjusted for safety margin): %d\",\n    CMD_MAX_ARG)\n\n#\n# Little helpers\n#\n\n# `getargspec` has been deprecated in Python 3.\nif hasattr(inspect, \"getfullargspec\"):\n    ArgSpecFake = collections.namedtuple(\n        \"ArgSpecFake\", [\"args\", \"varargs\", \"keywords\", \"defaults\"])\n\n    def getargspec(func):\n        return ArgSpecFake(*inspect.getfullargspec(func)[:4])\nelse:\n    getargspec = inspect.getargspec\n\n\ndef get_func_kwargs_doc(func):\n    \"\"\" Provides args for a function\n\n    Parameters\n    ----------\n    func: str\n      name of the function from which args are being requested\n\n    Returns\n    -------\n    list\n      of the args that a function takes in\n    \"\"\"\n    return getargspec(func)[0]\n\n    # TODO: format error message with descriptions of args\n    # return [repr(dict(get_docstring_split(func)[1]).get(x)) for x in getargspec(func)[0]]\n\n\ndef any_re_search(regexes, value):\n    \"\"\"Return if any of regexes (list or str) searches succesfully for value\"\"\"\n    for regex in ensure_tuple_or_list(regexes):\n        if re.search(regex, value):\n            return True\n    return False\n\n\ndef not_supported_on_windows(msg=None):\n    \"\"\"A little helper to be invoked to consistently fail whenever functionality is\n    not supported (yet) on Windows\n    \"\"\"\n    if on_windows:\n        raise NotImplementedError(\"This functionality is not yet implemented for Windows OS\"\n                                  + (\": %s\" % msg if msg else \"\"))\n\n\ndef shortened_repr(value, l=30):\n    try:\n        if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):\n            value_repr = repr(value)\n            if not value_repr.startswith('<') and len(value_repr) > l:\n                value_repr = \"<<%s...>>\" % (value_repr[:l - 8])\n            elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':\n                raise ValueError(\"I hate those useless long reprs\")\n        else:\n            raise ValueError(\"gimme class\")\n    except Exception as e:\n        value_repr = \"<%s>\" % value.__class__.__name__.split('.')[-1]\n    return value_repr\n\n\ndef __auto_repr__(obj):\n    attr_names = tuple()\n    if hasattr(obj, '__dict__'):\n        attr_names += tuple(obj.__dict__.keys())\n    if hasattr(obj, '__slots__'):\n        attr_names += tuple(obj.__slots__)\n\n    items = []\n    for attr in sorted(set(attr_names)):\n        if attr.startswith('_'):\n            continue\n        value = getattr(obj, attr)\n        # TODO:  should we add this feature to minimize some talktative reprs\n        # such as of URL?\n        #if value is None:\n        #    continue\n        items.append(\"%s=%s\" % (attr, shortened_repr(value)))\n\n    return \"%s(%s)\" % (obj.__class__.__name__, ', '.join(items))\n\n\ndef auto_repr(cls):\n    \"\"\"Decorator for a class to assign it an automagic quick and dirty __repr__\n\n    It uses public class attributes to prepare repr of a class\n\n    Original idea: http://stackoverflow.com/a/27799004/1265472\n    \"\"\"\n\n    cls.__repr__ = __auto_repr__\n    return cls\n\n\ndef _is_stream_tty(stream):\n    try:\n        # TODO: check on windows if hasattr check would work correctly and\n        # add value:\n        return stream.isatty()\n    except ValueError as exc:\n        # Who knows why it is a ValueError, but let's try to be specific\n        # If there is a problem with I/O - non-interactive, otherwise reraise\n        if \"I/O\" in str(exc):\n            return False\n        raise\n\n\ndef is_interactive():\n    \"\"\"Return True if all in/outs are open and tty.\n\n    Note that in a somewhat abnormal case where e.g. stdin is explicitly\n    closed, and any operation on it would raise a\n    `ValueError(\"I/O operation on closed file\")` exception, this function\n    would just return False, since the session cannot be used interactively.\n    \"\"\"\n    return all(_is_stream_tty(s) for s in (sys.stdin, sys.stdout, sys.stderr))\n\n\ndef get_ipython_shell():\n    \"\"\"Detect if running within IPython and returns its `ip` (shell) object\n\n    Returns None if not under ipython (no `get_ipython` function)\n    \"\"\"\n    try:\n        return get_ipython()\n    except NameError:\n        return None\n\n\ndef md5sum(filename):\n    \"\"\"Compute an MD5 sum for the given file\n    \"\"\"\n    from datalad.support.digests import Digester\n    return Digester(digests=['md5'])(filename)['md5']\n\n\ndef sorted_files(dout):\n    \"\"\"Return a (sorted) list of files under dout\n    \"\"\"\n    return sorted(sum([[opj(r, f)[len(dout) + 1:] for f in files]\n                       for r, d, files in os.walk(dout)\n                       if not '.git' in r], []))\n\n_encoded_dirsep = r'\\\\'  if on_windows else r'/'\n_VCS_REGEX = r'%s\\.(?:git|gitattributes|svn|bzr|hg)(?:%s|$)' % (\n    _encoded_dirsep, _encoded_dirsep)\n_DATALAD_REGEX = r'%s\\.(?:datalad)(?:%s|$)' % (\n    _encoded_dirsep, _encoded_dirsep)\n\n\ndef find_files(regex, topdir=curdir, exclude=None, exclude_vcs=True, exclude_datalad=False, dirs=False):\n    \"\"\"Generator to find files matching regex\n\n    Parameters\n    ----------\n    regex: basestring\n    exclude: basestring, optional\n      Matches to exclude\n    exclude_vcs:\n      If True, excludes commonly known VCS subdirectories.  If string, used\n      as regex to exclude those files (regex: `%r`)\n    exclude_datalad:\n      If True, excludes files known to be datalad meta-data files (e.g. under\n      .datalad/ subdirectory) (regex: `%r`)\n    topdir: basestring, optional\n      Directory where to search\n    dirs: bool, optional\n      Whether to match directories as well as files\n    \"\"\"\n    for dirpath, dirnames, filenames in os.walk(topdir):\n        names = (dirnames + filenames) if dirs else filenames\n        # TODO: might want to uniformize on windows to use '/'\n        paths = (opj(dirpath, name) for name in names)\n        for path in filter(re.compile(regex).search, paths):\n            path = path.rstrip(dirsep)\n            if exclude and re.search(exclude, path):\n                continue\n            if exclude_vcs and re.search(_VCS_REGEX, path):\n                continue\n            if exclude_datalad and re.search(_DATALAD_REGEX, path):\n                continue\n            yield path\nfind_files.__doc__ %= (_VCS_REGEX, _DATALAD_REGEX)\n\n\ndef expandpath(path, force_absolute=True):\n    \"\"\"Expand all variables and user handles in a path.\n\n    By default return an absolute path\n    \"\"\"\n    path = expandvars(expanduser(path))\n    if force_absolute:\n        path = abspath(path)\n    return path\n\n\ndef posix_relpath(path, start=None):\n    \"\"\"Behave like os.path.relpath, but always return POSIX paths...\n\n    on any platform.\"\"\"\n    # join POSIX style\n    return posixpath.join(\n        # split and relpath native style\n        # python2.7 ntpath implementation of relpath cannot handle start=None\n        *psplit(\n            relpath(path, start=start if start is not None else '')))\n\n\ndef is_explicit_path(path):\n    \"\"\"Return whether a path explicitly points to a location\n\n    Any absolute path, or relative path starting with either '../' or\n    './' is assumed to indicate a location on the filesystem. Any other\n    path format is not considered explicit.\"\"\"\n    path = expandpath(path, force_absolute=False)\n    return isabs(path) \\\n        or path.startswith(os.curdir + os.sep) \\\n        or path.startswith(os.pardir + os.sep)\n\n\n# handle this dance once, and import pathlib from here\n# in all other places\n\nfrom pathlib import (\n    Path,\n    PurePath,\n    PurePosixPath,\n)\n\n\ndef rotree(path, ro=True, chmod_files=True):\n    \"\"\"To make tree read-only or writable\n\n    Parameters\n    ----------\n    path : string\n      Path to the tree/directory to chmod\n    ro : bool, optional\n      Whether to make it R/O (default) or RW\n    chmod_files : bool, optional\n      Whether to operate also on files (not just directories)\n    \"\"\"\n    if ro:\n        chmod = lambda f: os.chmod(f, os.stat(f).st_mode & ~stat.S_IWRITE)\n    else:\n        chmod = lambda f: os.chmod(f, os.stat(f).st_mode | stat.S_IWRITE | stat.S_IREAD)\n\n    for root, dirs, files in os.walk(path, followlinks=False):\n        if chmod_files:\n            for f in files:\n                fullf = opj(root, f)\n                # might be the \"broken\" symlink which would fail to stat etc\n                if exists(fullf):\n                    chmod(fullf)\n        chmod(root)\n\n\ndef rmtree(path, chmod_files='auto', children_only=False, *args, **kwargs):\n    \"\"\"To remove git-annex .git it is needed to make all files and directories writable again first\n\n    Parameters\n    ----------\n    chmod_files : string or bool, optional\n       Whether to make files writable also before removal.  Usually it is just\n       a matter of directories to have write permissions.\n       If 'auto' it would chmod files on windows by default\n    children_only : bool, optional\n       If set, all files and subdirectories would be removed while the path\n       itself (must be a directory) would be preserved\n    `*args` :\n    `**kwargs` :\n       Passed into shutil.rmtree call\n    \"\"\"\n    # Give W permissions back only to directories, no need to bother with files\n    if chmod_files == 'auto':\n        chmod_files = on_windows\n    # TODO:  yoh thinks that if we could quickly check our Flyweight for\n    #        repos if any of them is under the path, and could call .precommit\n    #        on those to possibly stop batched processes etc, we did not have\n    #        to do it on case by case\n    # Check for open files\n    assert_no_open_files(path)\n\n    if children_only:\n        if not os.path.isdir(path):\n            raise ValueError(\"Can remove children only of directories\")\n        for p in os.listdir(path):\n            rmtree(op.join(path, p))\n        return\n    if not (os.path.islink(path) or not os.path.isdir(path)):\n        rotree(path, ro=False, chmod_files=chmod_files)\n        _rmtree(path, *args, **kwargs)\n    else:\n        # just remove the symlink\n        unlink(path)\n\n\ndef rmdir(path, *args, **kwargs):\n    \"\"\"os.rmdir with our optional checking for open files\"\"\"\n    assert_no_open_files(path)\n    os.rmdir(path)\n\n\ndef get_open_files(path, log_open=False):\n    \"\"\"Get open files under a path\n\n    Parameters\n    ----------\n    path : str\n      File or directory to check for open files under\n    log_open : bool or int\n      If set - logger level to use\n\n    Returns\n    -------\n    dict\n      path : pid\n\n    \"\"\"\n    # Original idea: https://stackoverflow.com/a/11115521/1265472\n    import psutil\n    files = {}\n    # since the ones returned by psutil would not be aware of symlinks in the\n    # path we should also get realpath for path\n    path = realpath(path)\n    for proc in psutil.process_iter():\n        try:\n            open_paths = [p.path for p in proc.open_files()] + [proc.cwd()]\n            for p in open_paths:\n                # note: could be done more efficiently so we do not\n                # renormalize path over and over again etc\n                if path_startswith(p, path):\n                    files[p] = proc\n        # Catch a race condition where a process ends\n        # before we can examine its files\n        except psutil.NoSuchProcess:\n            pass\n        except psutil.AccessDenied:\n            pass\n\n    if files and log_open:\n        lgr.log(log_open, \"Open files under %s: %s\", path, files)\n    return files\n\n\n_assert_no_open_files_cfg = os.environ.get('DATALAD_ASSERT_NO_OPEN_FILES')\nif _assert_no_open_files_cfg:\n    def assert_no_open_files(path):\n        files = get_open_files(path, log_open=40)\n        if _assert_no_open_files_cfg == 'assert':\n            assert not files\n        elif files:\n            if _assert_no_open_files_cfg == 'pdb':\n                import pdb\n                pdb.set_trace()\n            elif _assert_no_open_files_cfg == 'epdb':\n                import epdb\n                epdb.serve()\n            pass\n        # otherwise we would just issue that error message in the log\nelse:\n    def assert_no_open_files(*args, **kwargs):\n        pass\n\n\ndef rmtemp(f, *args, **kwargs):\n    \"\"\"Wrapper to centralize removing of temp files so we could keep them around\n\n    It will not remove the temporary file/directory if DATALAD_TESTS_TEMP_KEEP\n    environment variable is defined\n    \"\"\"\n    if not os.environ.get('DATALAD_TESTS_TEMP_KEEP'):\n        if not os.path.lexists(f):\n            lgr.debug(\"Path %s does not exist, so can't be removed\" % f)\n            return\n        lgr.log(5, \"Removing temp file: %s\" % f)\n        # Can also be a directory\n        if os.path.isdir(f):\n            rmtree(f, *args, **kwargs)\n        else:\n            unlink(f)\n    else:\n        lgr.info(\"Keeping temp file: %s\" % f)\n\n\ndef file_basename(name, return_ext=False):\n    \"\"\"\n    Strips up to 2 extensions of length up to 4 characters and starting with alpha\n    not a digit, so we could get rid of .tar.gz etc\n    \"\"\"\n    bname = basename(name)\n    fbname = re.sub(r'(\\.[a-zA-Z_]\\S{1,4}){0,2}$', '', bname)\n    if return_ext:\n        return fbname, bname[len(fbname) + 1:]\n    else:\n        return fbname\n\n\ndef escape_filename(filename):\n    \"\"\"Surround filename in \"\" and escape \" in the filename\n    \"\"\"\n    filename = filename.replace('\"', r'\\\"').replace('`', r'\\`')\n    filename = '\"%s\"' % filename\n    return filename\n\n\ndef encode_filename(filename):\n    \"\"\"Encode unicode filename\n    \"\"\"\n    if isinstance(filename, str):\n        return filename.encode(sys.getfilesystemencoding())\n    else:\n        return filename\n\n\ndef decode_input(s):\n    \"\"\"Given input string/bytes, decode according to stdin codepage (or UTF-8)\n    if not defined\n\n    If fails -- issue warning and decode allowing for errors\n    being replaced\n    \"\"\"\n    if isinstance(s, str):\n        return s\n    else:\n        encoding = sys.stdin.encoding or 'UTF-8'\n        try:\n            return s.decode(encoding)\n        except UnicodeDecodeError as exc:\n            lgr.warning(\n                \"Failed to decode input string using %s encoding. \"\n                \"Decoding allowing for errors\", encoding)\n            return s.decode(encoding, errors='replace')\n\n\nif on_windows:\n    def lmtime(filepath, mtime):\n        \"\"\"Set mtime for files.  On Windows a merely adapter to os.utime\n        \"\"\"\n        os.utime(filepath, (time.time(), mtime))\nelse:\n    def lmtime(filepath, mtime):\n        \"\"\"Set mtime for files, while not de-referencing symlinks.\n\n        To overcome absence of os.lutime\n\n        Works only on linux and OSX ATM\n        \"\"\"\n        from .cmd import Runner\n        # convert mtime to format touch understands [[CC]YY]MMDDhhmm[.SS]\n        smtime = time.strftime(\"%Y%m%d%H%M.%S\", time.localtime(mtime))\n        lgr.log(3, \"Setting mtime for %s to %s == %s\", filepath, mtime, smtime)\n        Runner().run(['touch', '-h', '-t', '%s' % smtime, filepath])\n        rfilepath = realpath(filepath)\n        if islink(filepath) and exists(rfilepath):\n            # trust noone - adjust also of the target file\n            # since it seemed like downloading under OSX (was it using curl?)\n            # didn't bother with timestamps\n            lgr.log(3, \"File is a symlink to %s Setting mtime for it to %s\",\n                    rfilepath, mtime)\n            os.utime(rfilepath, (time.time(), mtime))\n        # doesn't work on OSX\n        # Runner().run(['touch', '-h', '-d', '@%s' % mtime, filepath])\n\n\ndef ensure_tuple_or_list(obj):\n    \"\"\"Given an object, wrap into a tuple if not list or tuple\n    \"\"\"\n    if isinstance(obj, (list, tuple)):\n        return obj\n    return (obj,)\n\n\ndef ensure_iter(s, cls, copy=False, iterate=True):\n    \"\"\"Given not a list, would place it into a list. If None - empty list is returned\n\n    Parameters\n    ----------\n    s: list or anything\n    cls: class\n      Which iterable class to ensure\n    copy: bool, optional\n      If correct iterable is passed, it would generate its shallow copy\n    iterate: bool, optional\n      If it is not a list, but something iterable (but not a str)\n      iterate over it.\n    \"\"\"\n\n    if isinstance(s, cls):\n        return s if not copy else shallow_copy(s)\n    elif isinstance(s, str):\n        return cls((s,))\n    elif iterate and hasattr(s, '__iter__'):\n        return cls(s)\n    elif s is None:\n        return cls()\n    else:\n        return cls((s,))\n\n\ndef ensure_list(s, copy=False, iterate=True):\n    \"\"\"Given not a list, would place it into a list. If None - empty list is returned\n\n    Parameters\n    ----------\n    s: list or anything\n    copy: bool, optional\n      If list is passed, it would generate a shallow copy of the list\n    iterate: bool, optional\n      If it is not a list, but something iterable (but not a str)\n      iterate over it.\n    \"\"\"\n    return ensure_iter(s, list, copy=copy, iterate=iterate)\n\n\ndef ensure_list_from_str(s, sep='\\n'):\n    \"\"\"Given a multiline string convert it to a list of return None if empty\n\n    Parameters\n    ----------\n    s: str or list\n    \"\"\"\n\n    if not s:\n        return None\n\n    if isinstance(s, list):\n        return s\n    return s.split(sep)\n\n\ndef ensure_dict_from_str(s, **kwargs):\n    \"\"\"Given a multiline string with key=value items convert it to a dictionary\n\n    Parameters\n    ----------\n    s: str or dict\n\n    Returns None if input s is empty\n    \"\"\"\n\n    if not s:\n        return None\n\n    if isinstance(s, dict):\n        return s\n\n    out = {}\n    for value_str in ensure_list_from_str(s, **kwargs):\n        if '=' not in value_str:\n            raise ValueError(\"{} is not in key=value format\".format(repr(value_str)))\n        k, v = value_str.split('=', 1)\n        if k in out:\n            err = \"key {} was already defined in {}, but new value {} was provided\".format(k, out, v)\n            raise ValueError(err)\n        out[k] = v\n    return out\n\n\ndef ensure_bytes(s, encoding='utf-8'):\n    \"\"\"Convert/encode unicode string to bytes.\n\n    If `s` isn't a string, return it as is.\n\n    Parameters\n    ----------\n    encoding: str, optional\n      Encoding to use.  \"utf-8\" is the default\n    \"\"\"\n    if not isinstance(s, str):\n        return s\n    return s.encode(encoding)\n\n\ndef ensure_unicode(s, encoding=None, confidence=None):\n    \"\"\"Convert/decode bytestring to unicode.\n\n    If `s` isn't a bytestring, return it as is.\n\n    Parameters\n    ----------\n    encoding: str, optional\n      Encoding to use.  If None, \"utf-8\" is tried, and then if not a valid\n      UTF-8, encoding will be guessed\n    confidence: float, optional\n      A value between 0 and 1, so if guessing of encoding is of lower than\n      specified confidence, ValueError is raised\n    \"\"\"\n    if not isinstance(s, bytes):\n        return s\n    if encoding is None:\n        # Figure out encoding, defaulting to 'utf-8' which is our common\n        # target in contemporary digital society\n        try:\n            return s.decode('utf-8')\n        except UnicodeDecodeError as exc:\n            from .dochelpers import exc_str\n            lgr.debug(\"Failed to decode a string as utf-8: %s\", exc_str(exc))\n        # And now we could try to guess\n        from chardet import detect\n        enc = detect(s)\n        denc = enc.get('encoding', None)\n        if denc:\n            denc_confidence = enc.get('confidence', 0)\n            if confidence is not None and  denc_confidence < confidence:\n                raise ValueError(\n                    \"Failed to auto-detect encoding with high enough \"\n                    \"confidence. Highest confidence was %s for %s\"\n                    % (denc_confidence, denc)\n                )\n            return s.decode(denc)\n        else:\n            raise ValueError(\n                \"Could not decode value as utf-8, or to guess its encoding: %s\"\n                % repr(s)\n            )\n    else:\n        return s.decode(encoding)\n\n\ndef ensure_bool(s):\n    \"\"\"Convert value into boolean following convention for strings\n\n    to recognize on,True,yes as True, off,False,no as False\n    \"\"\"\n    if isinstance(s, str):\n        if s.isdigit():\n            return bool(int(s))\n        sl = s.lower()\n        if sl in {'y', 'yes', 'true', 'on'}:\n            return True\n        elif sl in {'n', 'no', 'false', 'off'}:\n            return False\n        else:\n            raise ValueError(\"Do not know how to treat %r as a boolean\" % s)\n    return bool(s)\n\n\ndef as_unicode(val, cast_types=object):\n    \"\"\"Given an arbitrary value, would try to obtain unicode value of it\n    \n    For unicode it would return original value, for python2 str or python3\n    bytes it would use ensure_unicode, for None - an empty (unicode) string,\n    and for any other type (see `cast_types`) - would apply the unicode \n    constructor.  If value is not an instance of `cast_types`, TypeError\n    is thrown\n    \n    Parameters\n    ----------\n    cast_types: type\n      Which types to cast to unicode by providing to constructor\n    \"\"\"\n    if val is None:\n        return u''\n    elif isinstance(val, str):\n        return val\n    elif isinstance(val, unicode_srctypes):\n        return ensure_unicode(val)\n    elif isinstance(val, cast_types):\n        return str(val)\n    else:\n        raise TypeError(\n            \"Value %r is not of any of known or provided %s types\"\n            % (val, cast_types))\n\n\ndef unique(seq, key=None, reverse=False):\n    \"\"\"Given a sequence return a list only with unique elements while maintaining order\n\n    This is the fastest solution.  See\n    https://www.peterbe.com/plog/uniqifiers-benchmark\n    and\n    http://stackoverflow.com/a/480227/1265472\n    for more information.\n    Enhancement -- added ability to compare for uniqueness using a key function\n\n    Parameters\n    ----------\n    seq:\n      Sequence to analyze\n    key: callable, optional\n      Function to call on each element so we could decide not on a full\n      element, but on its member etc\n    reverse: bool, optional\n      If True, uniqueness checked in the reverse order, so that the later ones\n      will take the order\n    \"\"\"\n    seen = set()\n    seen_add = seen.add\n\n    trans = reversed if reverse else lambda x: x\n\n    if not key:\n        out = [x for x in trans(seq) if not (x in seen or seen_add(x))]\n    else:\n        # OPT: could be optimized, since key is called twice, but for our cases\n        # should be just as fine\n        out = [x for x in trans(seq) if not (key(x) in seen or seen_add(key(x)))]\n\n    return out[::-1] if reverse else out\n\n\ndef all_same(items):\n    \"\"\"Quick check if all items are the same.\n\n    Identical to a check like len(set(items)) == 1 but\n    should be more efficient while working on generators, since would\n    return False as soon as any difference detected thus possibly avoiding\n    unnecessary evaluations\n    \"\"\"\n    first = True\n    first_item = None\n    for item in items:\n        if first:\n            first = False\n            first_item = item\n        else:\n            if item != first_item:\n                return False\n    # So we return False if was empty\n    return not first\n\n\ndef map_items(func, v):\n    \"\"\"A helper to apply `func` to all elements (keys and values) within dict\n\n    No type checking of values passed to func is done, so `func`\n    should be resilient to values which it should not handle\n\n    Initial usecase - apply_recursive(url_fragment, ensure_unicode)\n    \"\"\"\n    # map all elements within item\n    return v.__class__(\n        item.__class__(map(func, item))\n        for item in v.items()\n    )\n\n\ndef partition(items, predicate=bool):\n    \"\"\"Partition `items` by `predicate`.\n\n    Parameters\n    ----------\n    items : iterable\n    predicate : callable\n        A function that will be mapped over each element in `items`. The\n        elements will partitioned based on whether the return value is false or\n        true.\n\n    Returns\n    -------\n    A tuple with two generators, the first for 'false' items and the second for\n    'true' ones.\n\n    Notes\n    -----\n    Taken from Peter Otten's snippet posted at\n    https://nedbatchelder.com/blog/201306/filter_a_list_into_two_parts.html\n    \"\"\"\n    a, b = tee((predicate(item), item) for item in items)\n    return ((item for pred, item in a if not pred),\n            (item for pred, item in b if pred))\n\n\ndef generate_chunks(container, size):\n    \"\"\"Given a container, generate chunks from it with size up to `size`\n    \"\"\"\n    # There could be a \"smarter\" solution but I think this would suffice\n    assert size > 0,  \"Size should be non-0 positive\"\n    while container:\n        yield container[:size]\n        container = container[size:]\n\n\ndef generate_file_chunks(files, cmd=None):\n    \"\"\"Given a list of files, generate chunks of them to avoid exceding cmdline length\n\n    Parameters\n    ----------\n    files: list of str\n    cmd: str or list of str, optional\n      Command to account for as well\n    \"\"\"\n    files = ensure_list(files)\n    cmd = ensure_list(cmd)\n\n    maxl = max(map(len, files)) if files else 0\n    chunk_size = max(\n        1,  # should at least be 1. If blows then - not our fault\n        (CMD_MAX_ARG\n         - sum((len(x) + 3) for x in cmd)\n         - 4  # for '--' below\n         ) // (maxl + 3)  # +3 for possible quotes and a space\n    )\n    # TODO: additional treatment for \"too many arguments\"? although\n    # as https://github.com/datalad/datalad/issues/1883#issuecomment\n    # -436272758\n    # shows there seems to be no hardcoded limit on # of arguments,\n    # but may be we decide to go for smth like follow to be on safe side\n    # chunk_size = min(10240 - len(cmd), chunk_size)\n    file_chunks = generate_chunks(files, chunk_size)\n    return file_chunks\n\n\n#\n# Generators helpers\n#\n\ndef saved_generator(gen):\n    \"\"\"Given a generator returns two generators, where 2nd one just replays\n\n    So the first one would be going through the generated items and 2nd one\n    would be yielding saved items\n    \"\"\"\n    saved = []\n\n    def gen1():\n        for x in gen:  # iterating over original generator\n            saved.append(x)\n            yield x\n\n    def gen2():\n        for x in saved:  # yielding saved entries\n            yield x\n\n    return gen1(), gen2()\n\n\n#\n# Decorators\n#\ndef better_wraps(to_be_wrapped):\n    \"\"\"Decorator to replace `functools.wraps`\n\n    This is based on `wrapt` instead of `functools` and in opposition to `wraps`\n    preserves the correct signature of the decorated function.\n    It is written with the intention to replace the use of `wraps` without any\n    need to rewrite the actual decorators.\n    \"\"\"\n\n    @wrapt.decorator(adapter=to_be_wrapped)\n    def intermediator(to_be_wrapper, instance, args, kwargs):\n        return to_be_wrapper(*args, **kwargs)\n\n    return intermediator\n\n\n# Borrowed from pandas\n# Copyright: 2011-2014, Lambda Foundry, Inc. and PyData Development Team\n# License: BSD-3\ndef optional_args(decorator):\n    \"\"\"allows a decorator to take optional positional and keyword arguments.\n        Assumes that taking a single, callable, positional argument means that\n        it is decorating a function, i.e. something like this::\n\n            @my_decorator\n            def function(): pass\n\n        Calls decorator with decorator(f, `*args`, `**kwargs`)\"\"\"\n\n    @better_wraps(decorator)\n    def wrapper(*args, **kwargs):\n        def dec(f):\n            return decorator(f, *args, **kwargs)\n\n        is_decorating = not kwargs and len(args) == 1 and isinstance(args[0], Callable)\n        if is_decorating:\n            f = args[0]\n            args = []\n            return dec(f)\n        else:\n            return dec\n\n    return wrapper\n\n\n# TODO: just provide decorators for tempfile.mk* functions. This is ugly!\ndef get_tempfile_kwargs(tkwargs=None, prefix=\"\", wrapped=None):\n    \"\"\"Updates kwargs to be passed to tempfile. calls depending on env vars\n    \"\"\"\n    if tkwargs is None:\n        tkwargs_ = {}\n    else:\n        # operate on a copy of tkwargs to avoid any side-effects\n        tkwargs_ = tkwargs.copy()\n\n    # TODO: don't remember why I had this one originally\n    # if len(targs)<2 and \\\n    if 'prefix' not in tkwargs_:\n        tkwargs_['prefix'] = '_'.join(\n            ['datalad_temp'] +\n            ([prefix] if prefix else []) +\n            ([''] if (on_windows or not wrapped) else [wrapped.__name__]))\n\n    directory = os.environ.get('DATALAD_TESTS_TEMP_DIR')\n    if directory and 'dir' not in tkwargs_:\n        tkwargs_['dir'] = directory\n\n    return tkwargs_\n\n\n@optional_args\ndef line_profile(func):\n    \"\"\"Q&D helper to line profile the function and spit out stats\n    \"\"\"\n    import line_profiler\n    prof = line_profiler.LineProfiler()\n\n    @wraps(func)\n    def newfunc(*args, **kwargs):\n        try:\n            pfunc = prof(func)\n            return pfunc(*args, **kwargs)\n        finally:\n            prof.print_stats()\n    return newfunc\n\n\n# Borrowed from duecredit to wrap duecredit-handling to guarantee failsafe\ndef never_fail(f):\n    \"\"\"Assure that function never fails -- all exceptions are caught\n\n    Returns `None` if function fails internally.\n    \"\"\"\n    @wraps(f)\n    def wrapped_func(*args, **kwargs):\n        try:\n            return f(*args, **kwargs)\n        except Exception as e:\n            lgr.warning(\n                \"DataLad internal failure while running %s: %r. \"\n                \"Please report at https://github.com/datalad/datalad/issues\"\n                % (f, e)\n            )\n\n    if os.environ.get('DATALAD_ALLOW_FAIL', False):\n        return f\n    else:\n        return wrapped_func\n\n\n#\n# Context Managers\n#\n\n\n@contextmanager\ndef nothing_cm():\n    \"\"\"Just a dummy cm to programmically switch context managers\"\"\"\n    yield\n\n\n@contextmanager\ndef swallow_outputs():\n    \"\"\"Context manager to help consuming both stdout and stderr, and print()\n\n    stdout is available as cm.out and stderr as cm.err whenever cm is the\n    yielded context manager.\n    Internally uses temporary files to guarantee absent side-effects of swallowing\n    into StringIO which lacks .fileno.\n\n    print mocking is necessary for some uses where sys.stdout was already bound\n    to original sys.stdout, thus mocking it later had no effect. Overriding\n    print function had desired effect\n    \"\"\"\n\n    class StringIOAdapter(object):\n        \"\"\"Little adapter to help getting out/err values\n        \"\"\"\n        def __init__(self):\n            kw = get_tempfile_kwargs({}, prefix=\"outputs\")\n\n            self._out = open(tempfile.mktemp(**kw), 'w')\n            self._err = open(tempfile.mktemp(**kw), 'w')\n\n        def _read(self, h):\n            with open(h.name) as f:\n                return f.read()\n\n        @property\n        def out(self):\n            if not self._out.closed:\n                self._out.flush()\n            return self._read(self._out)\n\n        @property\n        def err(self):\n            if not self._err.closed:\n                self._err.flush()\n            return self._read(self._err)\n\n        @property\n        def handles(self):\n            return self._out, self._err\n\n        def cleanup(self):\n            self._out.close()\n            self._err.close()\n            out_name = self._out.name\n            err_name = self._err.name\n            del self._out\n            del self._err\n            gc.collect()\n            rmtemp(out_name)\n            rmtemp(err_name)\n\n    def fake_print(*args, **kwargs):\n        sep = kwargs.pop('sep', ' ')\n        end = kwargs.pop('end', '\\n')\n        file = kwargs.pop('file', sys.stdout)\n\n        if file in (oldout, olderr, sys.stdout, sys.stderr):\n            # we mock\n            try:\n                sys.stdout.write(sep.join(args) + end)\n            except UnicodeEncodeError as exc:\n                lgr.error(\n                    \"Failed to write to mocked stdout, got %s, continue as it \"\n                    \"didn't happen\",  exc)\n        else:\n            # must be some other file one -- leave it alone\n            oldprint(*args, sep=sep, end=end, file=file)\n\n    from .ui import ui\n    # preserve -- they could have been mocked already\n    oldprint = getattr(builtins, 'print')\n    oldout, olderr = sys.stdout, sys.stderr\n    olduiout = ui.out\n    adapter = StringIOAdapter()\n\n    try:\n        sys.stdout, sys.stderr = adapter.handles\n        ui.out = adapter.handles[0]\n        setattr(builtins, 'print', fake_print)\n\n        yield adapter\n    finally:\n        sys.stdout, sys.stderr, ui.out = oldout, olderr, olduiout\n        setattr(builtins, 'print',  oldprint)\n        adapter.cleanup()\n\n\n@contextmanager\ndef swallow_logs(new_level=None, file_=None, name='datalad'):\n    \"\"\"Context manager to consume all logs.\n\n    \"\"\"\n    lgr = logging.getLogger(name)\n\n    # Keep old settings\n    old_level = lgr.level\n    old_handlers = lgr.handlers\n\n    # Let's log everything into a string\n    # TODO: generalize with the one for swallow_outputs\n    class StringIOAdapter(object):\n        \"\"\"Little adapter to help getting out values\n\n        And to stay consistent with how swallow_outputs behaves\n        \"\"\"\n        def __init__(self):\n            if file_ is None:\n                kw = get_tempfile_kwargs({}, prefix=\"logs\")\n                out_file = tempfile.mktemp(**kw)\n            else:\n                out_file = file_\n            # PY3 requires clearly one or another.  race condition possible\n            self._out = open(out_file, 'a')\n            self._final_out = None\n\n        def _read(self, h):\n            with open(h.name) as f:\n                return f.read()\n\n        @property\n        def out(self):\n            if self._final_out is not None:\n                # we closed and cleaned up already\n                return self._final_out\n            else:\n                self._out.flush()\n                return self._read(self._out)\n\n        @property\n        def lines(self):\n            return self.out.split('\\n')\n\n        @property\n        def handle(self):\n            return self._out\n\n        def cleanup(self):\n            # store for access while object exists\n            self._final_out = self.out\n            self._out.close()\n            out_name = self._out.name\n            del self._out\n            gc.collect()\n            if not file_:\n                rmtemp(out_name)\n\n        def assert_logged(self, msg=None, level=None, regex=True, **kwargs):\n            \"\"\"Provide assertion on whether a msg was logged at a given level\n\n            If neither `msg` nor `level` provided, checks if anything was logged\n            at all.\n\n            Parameters\n            ----------\n            msg: str, optional\n              Message (as a regular expression, if `regex`) to be searched.\n              If no msg provided, checks if anything was logged at a given level.\n            level: str, optional\n              String representing the level to be logged\n            regex: bool, optional\n              If False, regular `assert_in` is used\n            **kwargs: str, optional\n              Passed to `assert_re_in` or `assert_in`\n            \"\"\"\n            from datalad.tests.utils import assert_re_in\n            from datalad.tests.utils import assert_in\n\n            if regex:\n                match = r'\\[%s\\] ' % level if level else r\"\\[\\S+\\] \"\n            else:\n                match = '[%s] ' % level if level else ''\n\n            if msg:\n                match += msg\n\n            if match:\n                (assert_re_in if regex else assert_in)(match, self.out, **kwargs)\n            else:\n                assert not kwargs, \"no kwargs to be passed anywhere\"\n                assert self.out, \"Nothing was logged!?\"\n\n    adapter = StringIOAdapter()\n    # TODO: it does store messages but without any formatting, i.e. even without\n    # date/time prefix etc.  IMHO it should preserve formatting in case if file_ is\n    # set\n    swallow_handler = logging.StreamHandler(adapter.handle)\n    # we want to log levelname so we could test against it\n    swallow_handler.setFormatter(\n        logging.Formatter('[%(levelname)s] %(message)s'))\n    # Inherit filters\n    from datalad.log import ProgressHandler\n    swallow_handler.filters = sum([h.filters for h in old_handlers\n                                   if not isinstance(h, ProgressHandler)],\n                                  [])\n    lgr.handlers = [swallow_handler]\n    if old_level < logging.DEBUG:  # so if HEAVYDEBUG etc -- show them!\n        lgr.handlers += old_handlers\n\n    if isinstance(new_level, str):\n        new_level = getattr(logging, new_level)\n\n    if new_level is not None:\n        lgr.setLevel(new_level)\n\n    try:\n        yield adapter\n        # TODO: if file_ and there was an exception -- most probably worth logging it?\n        # although ideally it should be the next log outside added to that file_ ... oh well\n    finally:\n        lgr.handlers = old_handlers\n        lgr.setLevel(old_level)\n        adapter.cleanup()\n\n\n# TODO: May be melt in with swallow_logs at some point:\n@contextmanager\ndef disable_logger(logger=None):\n    \"\"\"context manager to temporarily disable logging\n\n    This is to provide one of swallow_logs' purposes without unnecessarily\n    creating temp files (see gh-1865)\n\n    Parameters\n    ----------\n    logger: Logger\n        Logger whose handlers will be ordered to not log anything.\n        Default: datalad's topmost Logger ('datalad')\n    \"\"\"\n\n    class NullFilter(logging.Filter):\n        \"\"\"Filter class to reject all records\n        \"\"\"\n        def filter(self, record):\n            return 0\n\n    if logger is None:\n        # default: all of datalad's logging:\n        logger = logging.getLogger('datalad')\n\n    filter_ = NullFilter(logger.name)\n    [h.addFilter(filter_) for h in logger.handlers]\n\n    try:\n        yield logger\n    finally:\n        [h.removeFilter(filter_) for h in logger.handlers]\n\n\n#\n# Additional handlers\n#\n_sys_excepthook = sys.excepthook  # Just in case we ever need original one\n\n\ndef setup_exceptionhook(ipython=False):\n    \"\"\"Overloads default sys.excepthook with our exceptionhook handler.\n\n       If interactive, our exceptionhook handler will invoke\n       pdb.post_mortem; if not interactive, then invokes default handler.\n    \"\"\"\n\n    def _datalad_pdb_excepthook(type, value, tb):\n        import traceback\n        traceback.print_exception(type, value, tb)\n        print()\n        if is_interactive():\n            import pdb\n            pdb.post_mortem(tb)\n\n    if ipython:\n        from IPython.core import ultratb\n        sys.excepthook = ultratb.FormattedTB(mode='Verbose',\n                                             # color_scheme='Linux',\n                                             call_pdb=is_interactive())\n    else:\n        sys.excepthook = _datalad_pdb_excepthook\n\n\ndef ensure_dir(*args):\n    \"\"\"Make sure directory exists.\n\n    Joins the list of arguments to an os-specific path to the desired\n    directory and creates it, if it not exists yet.\n    \"\"\"\n    dirname = opj(*args)\n    if not exists(dirname):\n        os.makedirs(dirname)\n    return dirname\n\n\ndef updated(d, update):\n    \"\"\"Return a copy of the input with the 'update'\n\n    Primarily for updating dictionaries\n    \"\"\"\n    d = d.copy()\n    d.update(update)\n    return d\n\n\n_pwd_mode = None\n\n\ndef _switch_to_getcwd(msg, *args):\n    global _pwd_mode\n    _pwd_mode = 'cwd'\n    lgr.warning(\n        msg + \". From now on will be returning os.getcwd(). Directory\"\n               \" symlinks in the paths will be resolved\",\n        *args\n    )\n    # TODO:  we might want to mitigate by going through all flywheighted\n    # repos and tuning up their .paths to be resolved?\n\n\ndef getpwd():\n    \"\"\"Try to return a CWD without dereferencing possible symlinks\n\n    This function will try to use PWD environment variable to provide a current\n    working directory, possibly with some directories along the path being\n    symlinks to other directories.  Unfortunately, PWD is used/set only by the\n    shell and such functions as `os.chdir` and `os.getcwd` nohow use or modify\n    it, thus `os.getcwd()` returns path with links dereferenced.\n\n    While returning current working directory based on PWD env variable we\n    verify that the directory is the same as `os.getcwd()` after resolving all\n    symlinks.  If that verification fails, we fall back to always use\n    `os.getcwd()`.\n\n    Initial decision to either use PWD env variable or os.getcwd() is done upon\n    the first call of this function.\n    \"\"\"\n    global _pwd_mode\n    if _pwd_mode is None:\n        # we need to decide!\n        try:\n            pwd = os.environ['PWD']\n            if on_windows and pwd and pwd.startswith('/'):\n                # It should be a path from MSYS.\n                # - it might start with a drive letter or not\n                # - it seems to be \"illegal\" to have a single letter directories\n                #   under / path, i.e. if created - they aren't found\n                # - 'ln -s' does not fail to create a \"symlink\" but it just\n                # copies!\n                #   so we are not likely to need original PWD purpose on\n                # those systems\n                # Verdict:\n                _pwd_mode = 'cwd'\n            else:\n                _pwd_mode = 'PWD'\n        except KeyError:\n            _pwd_mode = 'cwd'\n\n    if _pwd_mode == 'cwd':\n        return os.getcwd()\n    elif _pwd_mode == 'PWD':\n        try:\n            cwd = os.getcwd()\n        except OSError as exc:\n            if \"o such file\" in str(exc):\n                # directory was removed but we promised to be robust and\n                # still report the path we might know since we are still in PWD\n                # mode\n                cwd = None\n            else:\n                raise\n        try:\n            pwd = os.environ['PWD']\n            pwd_real = op.realpath(pwd)\n            # This logic would fail to catch the case where chdir did happen\n            # to the directory where current PWD is pointing to, e.g.\n            # $> ls -ld $PWD\n            # lrwxrwxrwx 1 yoh yoh 5 Oct 11 13:27 /home/yoh/.tmp/tmp -> /tmp//\n            # hopa:~/.tmp/tmp\n            # $> python -c 'import os; os.chdir(\"/tmp\"); from datalad.utils import getpwd; print(getpwd(), os.getcwd())'\n            # ('/home/yoh/.tmp/tmp', '/tmp')\n            # but I guess that should not be too harmful\n            if cwd is not None and pwd_real != cwd:\n                _switch_to_getcwd(\n                    \"realpath of PWD=%s is %s whenever os.getcwd()=%s\",\n                    pwd, pwd_real, cwd\n                )\n                return cwd\n            return pwd\n        except KeyError:\n            _switch_to_getcwd(\"PWD env variable is no longer available\")\n            return cwd  # Must not happen, but may be someone\n                        # evil purges PWD from environ?\n    else:\n        raise RuntimeError(\n            \"Must have not got here. \"\n            \"pwd_mode must be either cwd or PWD. And it is now %r\" % (_pwd_mode,)\n        )\n\n\nclass chpwd(object):\n    \"\"\"Wrapper around os.chdir which also adjusts environ['PWD']\n\n    The reason is that otherwise PWD is simply inherited from the shell\n    and we have no ability to assess directory path without dereferencing\n    symlinks.\n\n    If used as a context manager it allows to temporarily change directory\n    to the given path\n    \"\"\"\n    def __init__(self, path, mkdir=False, logsuffix=''):\n\n        if path:\n            # PY35 has no auto-conversion of Path to str\n            path = str(path)\n            pwd = getpwd()\n            self._prev_pwd = pwd\n        else:\n            self._prev_pwd = None\n            return\n\n        if not isabs(path):\n            path = normpath(opj(pwd, path))\n        if not os.path.exists(path) and mkdir:\n            self._mkdir = True\n            os.mkdir(path)\n        else:\n            self._mkdir = False\n        lgr.debug(\"chdir %r -> %r %s\", self._prev_pwd, path, logsuffix)\n        os.chdir(path)  # for grep people -- ok, to chdir here!\n        os.environ['PWD'] = path\n\n    def __enter__(self):\n        # nothing more to do really, chdir was in the constructor\n        pass\n\n    def __exit__(self, exc_type, exc_val, exc_tb):\n        if self._prev_pwd:\n            # Need to use self.__class__ so this instance, if the entire\n            # thing mocked during the test, still would use correct chpwd\n            self.__class__(self._prev_pwd, logsuffix=\"(coming back)\")\n\n\ndef dlabspath(path, norm=False):\n    \"\"\"Symlinks-in-the-cwd aware abspath\n\n    os.path.abspath relies on os.getcwd() which would not know about symlinks\n    in the path\n\n    TODO: we might want to norm=True by default to match behavior of\n    os .path.abspath?\n    \"\"\"\n    if not isabs(path):\n        # if not absolute -- relative to pwd\n        path = opj(getpwd(), path)\n    return normpath(path) if norm else path\n\n\ndef with_pathsep(path):\n    \"\"\"Little helper to guarantee that path ends with /\"\"\"\n    return path + sep if not path.endswith(sep) else path\n\n\ndef get_path_prefix(path, pwd=None):\n    \"\"\"Get path prefix (for current directory)\n\n    Returns relative path to the topdir, if we are under topdir, and if not\n    absolute path to topdir.  If `pwd` is not specified - current directory\n    assumed\n    \"\"\"\n    pwd = pwd or getpwd()\n    path = dlabspath(path)\n    path_ = with_pathsep(path)\n    pwd_ = with_pathsep(pwd)\n    common = commonprefix((path_, pwd_))\n    if common.endswith(sep) and common in {path_, pwd_}:\n        # we are in subdir or above the path = use relative path\n        location_prefix = relpath(path, pwd)\n        # if benign \"here\" - cut off\n        if location_prefix in (curdir, curdir + sep):\n            location_prefix = ''\n        return location_prefix\n    else:\n        # just return absolute path\n        return path\n\n\ndef _get_normalized_paths(path, prefix):\n    if isabs(path) != isabs(prefix):\n        raise ValueError(\"Both paths must either be absolute or relative. \"\n                         \"Got %r and %r\" % (path, prefix))\n    path = with_pathsep(path)\n    prefix = with_pathsep(prefix)\n    return path, prefix\n\n\ndef path_startswith(path, prefix):\n    \"\"\"Return True if path starts with prefix path\n\n    Parameters\n    ----------\n    path: str\n    prefix: str\n    \"\"\"\n    path, prefix = _get_normalized_paths(path, prefix)\n    return path.startswith(prefix)\n\n\ndef path_is_subpath(path, prefix):\n    \"\"\"Return True if path is a subpath of prefix\n\n    It will return False if path == prefix.\n\n    Parameters\n    ----------\n    path: str\n    prefix: str\n    \"\"\"\n    path, prefix = _get_normalized_paths(path, prefix)\n    return (len(prefix) < len(path)) and path.startswith(prefix)\n\n\ndef knows_annex(path):\n    \"\"\"Returns whether at a given path there is information about an annex\n\n    It is just a thin wrapper around GitRepo.is_with_annex() classmethod\n    which also checks for `path` to exist first.\n\n    This includes actually present annexes, but also uninitialized ones, or\n    even the presence of a remote annex branch.\n    \"\"\"\n    from os.path import exists\n    if not exists(path):\n        lgr.debug(\"No annex: test path {0} doesn't exist\".format(path))\n        return False\n    from datalad.support.gitrepo import GitRepo\n    return GitRepo(path, init=False, create=False).is_with_annex()\n\n\n@contextmanager\ndef make_tempfile(content=None, wrapped=None, **tkwargs):\n    \"\"\"Helper class to provide a temporary file name and remove it at the end (context manager)\n\n    Parameters\n    ----------\n    mkdir : bool, optional (default: False)\n        If True, temporary directory created using tempfile.mkdtemp()\n    content : str or bytes, optional\n        Content to be stored in the file created\n    wrapped : function, optional\n        If set, function name used to prefix temporary file name\n    `**tkwargs`:\n        All other arguments are passed into the call to tempfile.mk{,d}temp(),\n        and resultant temporary filename is passed as the first argument into\n        the function t.  If no 'prefix' argument is provided, it will be\n        constructed using module and function names ('.' replaced with\n        '_').\n\n    To change the used directory without providing keyword argument 'dir' set\n    DATALAD_TESTS_TEMP_DIR.\n\n    Examples\n    --------\n        >>> from os.path import exists\n        >>> from datalad.utils import make_tempfile\n        >>> with make_tempfile() as fname:\n        ...    k = open(fname, 'w').write('silly test')\n        >>> assert not exists(fname)  # was removed\n\n        >>> with make_tempfile(content=\"blah\") as fname:\n        ...    assert open(fname).read() == \"blah\"\n    \"\"\"\n\n    if tkwargs.get('mkdir', None) and content is not None:\n        raise ValueError(\"mkdir=True while providing content makes no sense\")\n\n    tkwargs_ = get_tempfile_kwargs(tkwargs, wrapped=wrapped)\n\n    # if DATALAD_TESTS_TEMP_DIR is set, use that as directory,\n    # let mktemp handle it otherwise. However, an explicitly provided\n    # dir=... will override this.\n    mkdir = tkwargs_.pop('mkdir', False)\n\n    filename = {False: tempfile.mktemp,\n                True: tempfile.mkdtemp}[mkdir](**tkwargs_)\n    filename = realpath(filename)\n\n    if content:\n        with open(filename, 'w' + ('b' if isinstance(content, bytes) else '')) as f:\n            f.write(content)\n\n    if __debug__:\n        # TODO mkdir\n        lgr.debug('Created temporary thing named %s\"' % filename)\n    try:\n        yield filename\n    finally:\n        # glob here for all files with the same name (-suffix)\n        # would be useful whenever we requested .img filename,\n        # and function creates .hdr as well\n        lsuffix = len(tkwargs_.get('suffix', ''))\n        filename_ = lsuffix and filename[:-lsuffix] or filename\n        filenames = glob.glob(filename_ + '*')\n        if len(filename_) < 3 or len(filenames) > 5:\n            # For paranoid yoh who stepped into this already ones ;-)\n            lgr.warning(\"It is unlikely that it was intended to remove all\"\n                        \" files matching %r. Skipping\" % filename_)\n            return\n        for f in filenames:\n            try:\n                rmtemp(f)\n            except OSError:  # pragma: no cover\n                pass\n\n\ndef _path_(*p):\n    \"\"\"Given a path in POSIX\" notation, regenerate one in native to the env one\"\"\"\n    if on_windows:\n        return opj(*map(lambda x: opj(*x.split('/')), p))\n    else:\n        # Assume that all others as POSIX compliant so nothing to be done\n        return opj(*p)\n\n\ndef get_timestamp_suffix(time_=None, prefix='-'):\n    \"\"\"Return a time stamp (full date and time up to second)\n\n    primarily to be used for generation of log files names\n    \"\"\"\n    args = []\n    if time_ is not None:\n        if isinstance(time_, int):\n            time_ = time.gmtime(time_)\n        args.append(time_)\n    return time.strftime(prefix + TIMESTAMP_FMT, *args)\n\n\ndef get_logfilename(dspath, cmd='datalad'):\n    \"\"\"Return a filename to use for logging under a dataset/repository\n\n    directory would be created if doesn't exist, but dspath must exist\n    and be a directory\n    \"\"\"\n    assert(exists(dspath))\n    assert(isdir(dspath))\n    ds_logdir = ensure_dir(dspath, '.git', 'datalad', 'logs')  # TODO: use WEB_META_LOG whenever #789 merged\n    return opj(ds_logdir, 'crawl-%s.log' % get_timestamp_suffix())\n\n\ndef get_trace(edges, start, end, trace=None):\n    \"\"\"Return the trace/path to reach a node in a tree.\n\n    Parameters\n    ----------\n    edges : sequence(2-tuple)\n      The tree given by a sequence of edges (parent, child) tuples. The\n      nodes can be identified by any value and data type that supports\n      the '==' operation.\n    start :\n      Identifier of the start node. Must be present as a value in the parent\n      location of an edge tuple in order to be found.\n    end :\n      Identifier of the target/end node. Must be present as a value in the child\n      location of an edge tuple in order to be found.\n    trace : list\n      Mostly useful for recursive calls, and used internally.\n\n    Returns\n    -------\n    None or list\n      Returns a list with the trace to the target (the starts and the target\n      are not included in the trace, hence if start and end are directly connected\n      an empty list is returned), or None when no trace to the target can be found,\n      or start and end are identical.\n    \"\"\"\n    # the term trace is used to avoid confusion with a path in the sense\n    # of a filesystem path, but the analogy fits and nodes can be paths\n    if trace is None:\n        trace = []\n    if not edges:\n        raise ValueError(\"no edges given\")\n    for cand in edges:\n        cand_super, cand_sub = cand\n        if cand_sub in trace:\n            # only DAGs, skip any cyclic traces\n            continue\n        if trace and cand_super != trace[-1]:\n            # only consider edges that lead off the end of the trace\n            continue\n        if not trace and cand_super != start:\n            # we got nothing yet, and this edges is not matching the start\n            continue\n        if cand_sub == end:\n            return trace\n        # dive into potential subnodes\n        cand_trace = get_trace(\n            edges,\n            start,\n            end,\n            trace + [cand_sub])\n        if cand_trace:\n            return cand_trace\n    return None\n\n\ndef get_dataset_root(path):\n    \"\"\"Return the root of an existent dataset containing a given path\n\n    The root path is returned in the same absolute or relative form\n    as the input argument. If no associated dataset exists, or the\n    input path doesn't exist, None is returned.\n\n    If `path` is a symlink or something other than a directory, its\n    the root dataset containing its parent directory will be reported.\n    If none can be found, at a symlink at `path` is pointing to a\n    dataset, `path` itself will be reported as the root.\n    \"\"\"\n    suffix = '.git'\n    altered = None\n    if op.islink(path) or not op.isdir(path):\n        altered = path\n        path = op.dirname(path)\n    apath = op.abspath(path)\n    # while we can still go up\n    while op.split(apath)[1]:\n        if op.exists(op.join(path, suffix)):\n            return path\n        # new test path in the format we got it\n        path = op.normpath(op.join(path, os.pardir))\n        # no luck, next round\n        apath = op.abspath(path)\n    # if we applied dirname() at the top, we give it another go with\n    # the actual path, if it was itself a symlink, it could be the\n    # top-level dataset itself\n    if altered and op.exists(op.join(altered, suffix)):\n        return altered\n\n    return None\n\n\n# ATM used in datalad_crawler extension, so do not remove yet\ndef try_multiple(ntrials, exception, base, f, *args, **kwargs):\n    \"\"\"Call f multiple times making exponentially growing delay between the calls\"\"\"\n    from .dochelpers import exc_str\n    for trial in range(1, ntrials+1):\n        try:\n            return f(*args, **kwargs)\n        except exception as exc:\n            if trial == ntrials:\n                raise  # just reraise on the last trial\n            t = base ** trial\n            lgr.warning(\"Caught %s on trial #%d. Sleeping %f and retrying\",\n                        exc_str(exc), trial, t)\n            sleep(t)\n\n\n@optional_args\ndef try_multiple_dec(f, ntrials=None, duration=0.1, exceptions=None, increment_type=None):\n    \"\"\"Decorator to try function multiple times.\n\n    Main purpose is to decorate functions dealing with removal of files/directories\n    and which might need a few seconds to work correctly on Windows which takes\n    its time to release files/directories.\n\n    Parameters\n    ----------\n    ntrials: int, optional\n    duration: float, optional\n      Seconds to sleep before retrying.\n    increment_type: {None, 'exponential'}\n      Note that if it is exponential, duration should typically be > 1.0\n      so it grows with higher power\n\n    \"\"\"\n    from .dochelpers import exc_str\n    if not exceptions:\n        exceptions = (OSError, WindowsError, PermissionError) \\\n            if on_windows else OSError\n    if not ntrials:\n        # Life goes fast on proper systems, no need to delay it much\n        ntrials = 50 if on_windows else 3\n\n    assert increment_type in {None, 'exponential'}\n\n    @wraps(f)\n    def wrapped(*args, **kwargs):\n        t = duration\n        for trial in range(ntrials):\n            try:\n                return f(*args, **kwargs)\n            except exceptions as exc:\n                if increment_type == 'exponential':\n                    t = duration ** (trial + 1)\n                lgr.log(\n                    5,\n                    \"Caught %s on trial #%d. Sleeping %f and retrying\",\n                    exc_str(exc), trial, t)\n                if trial < ntrials - 1:\n                    sleep(t)\n                else:\n                    raise\n\n    return wrapped\n\n\n@try_multiple_dec\ndef unlink(f):\n    \"\"\"'Robust' unlink.  Would try multiple times\n\n    On windows boxes there is evidence for a latency of more than a second\n    until a file is considered no longer \"in-use\".\n    WindowsError is not known on Linux, and if IOError or any other\n    exception\n    is thrown then if except statement has WindowsError in it -- NameError\n    also see gh-2533\n    \"\"\"\n    # Check for open files\n    assert_no_open_files(f)\n    return os.unlink(f)\n\n\n@try_multiple_dec\ndef _rmtree(*args, **kwargs):\n    \"\"\"Just a helper to decorate shutil.rmtree.\n\n    rmtree defined above does more and ideally should not itself be decorated\n    since a recursive definition and does checks for open files inside etc -\n    might be too runtime expensive\n    \"\"\"\n    return shutil.rmtree(*args, **kwargs)\n\n\ndef slash_join(base, extension):\n    \"\"\"Join two strings with a '/', avoiding duplicate slashes\n\n    If any of the strings is None the other is returned as is.\n    \"\"\"\n    if extension is None:\n        return base\n    if base is None:\n        return extension\n    return '/'.join(\n        (base.rstrip('/'),\n         extension.lstrip('/')))\n\n\ndef safe_print(s):\n    \"\"\"Print with protection against UTF-8 encoding errors\"\"\"\n    # A little bit of dance to be able to test this code\n    print_f = getattr(builtins, \"print\")\n    try:\n        print_f(s)\n    except UnicodeEncodeError:\n        # failed to encode so let's do encoding while ignoring errors\n        # to print at least something\n        # explicit `or ascii` since somehow on buildbot it seemed to return None\n        s = s.encode(getattr(sys.stdout, 'encoding', 'ascii') or 'ascii', errors='ignore') \\\n            if hasattr(s, 'encode') else s\n        print_f(s.decode())\n\n#\n# IO Helpers\n#\n\ndef open_r_encdetect(fname, readahead=1000):\n    \"\"\"Return a file object in read mode with auto-detected encoding\n\n    This is helpful when dealing with files of unknown encoding.\n\n    Parameters\n    ----------\n    readahead: int, optional\n      How many bytes to read for guessing the encoding type.  If\n      negative - full file will be read\n    \"\"\"\n    from chardet import detect\n    import io\n    # read some bytes from the file\n    with open(fname, 'rb') as f:\n        head = f.read(readahead)\n    enc = detect(head)\n    denc = enc.get('encoding', None)\n    lgr.debug(\"Auto-detected encoding %s for file %s (confidence: %s)\",\n              denc,\n              fname,\n              enc.get('confidence', 'unknown'))\n    return io.open(fname, encoding=denc)\n\n\ndef read_csv_lines(fname, dialect=None, readahead=16384, **kwargs):\n    \"\"\"A generator of dict records from a CSV/TSV\n\n    Automatically guesses the encoding for each record to convert to UTF-8\n\n    Parameters\n    ----------\n    fname: str\n      Filename\n    dialect: str, optional\n      Dialect to specify to csv.reader. If not specified -- guessed from\n      the file, if fails to guess, \"excel-tab\" is assumed\n    readahead: int, optional\n      How many bytes to read from the file to guess the type\n    **kwargs\n      Passed to `csv.reader`\n    \"\"\"\n    import csv\n    if dialect is None:\n        with open(fname) as tsvfile:\n            # add robustness, use a sniffer\n            try:\n                dialect = csv.Sniffer().sniff(tsvfile.read(readahead))\n            except Exception as exc:\n                from .dochelpers import exc_str\n                lgr.warning(\n                    'Could not determine file-format, assuming TSV: %s',\n                    exc_str(exc)\n                )\n                dialect = 'excel-tab'\n\n    kw = dict(encoding='utf-8')\n    with open(fname, 'r', **kw) as tsvfile:\n        # csv.py doesn't do Unicode; encode temporarily as UTF-8:\n        csv_reader = csv.reader(\n            tsvfile,\n            dialect=dialect,\n            **kwargs\n        )\n        header = None\n        for row in csv_reader:\n            # decode UTF-8 back to Unicode, cell by cell:\n            row_unicode = map(ensure_unicode, row)\n            if header is None:\n                header = list(row_unicode)\n            else:\n                yield dict(zip(header, row_unicode))\n\n\ndef import_modules(modnames, pkg, msg=\"Failed to import {module}\", log=lgr.debug):\n    \"\"\"Helper to import a list of modules without failing if N/A\n\n    Parameters\n    ----------\n    modnames: list of str\n      List of module names to import\n    pkg: str\n      Package under which to import\n    msg: str, optional\n      Message template for .format() to log at DEBUG level if import fails.\n      Keys {module} and {package} will be provided and ': {exception}' appended\n    log: callable, optional\n      Logger call to use for logging messages\n    \"\"\"\n    from importlib import import_module\n    _globals = globals()\n    mods_loaded = []\n    if pkg and not pkg in sys.modules:\n        # with python 3.5.1 (ok with 3.5.5) somehow kept running into\n        #  Failed to import dlsub1: Parent module 'dltestm1' not loaded\n        # while running the test. Preloading pkg resolved the issue\n        import_module(pkg)\n    for modname in modnames:\n        try:\n            _globals[modname] = mod = import_module(\n                '.{}'.format(modname),\n                pkg)\n            mods_loaded.append(mod)\n        except Exception as exc:\n            from datalad.dochelpers import exc_str\n            log((msg + ': {exception}').format(\n                module=modname, package=pkg, exception=exc_str(exc)))\n    return mods_loaded\n\n\ndef import_module_from_file(modpath, pkg=None, log=lgr.debug):\n    \"\"\"Import provided module given a path\n\n    TODO:\n    - RF/make use of it in pipeline.py which has similar logic\n    - join with import_modules above?\n\n    Parameters\n    ----------\n    pkg: module, optional\n       If provided, and modpath is under pkg.__path__, relative import will be\n       used\n    \"\"\"\n    assert(modpath.endswith('.py'))  # for now just for .py files\n\n    log(\"Importing %s\" % modpath)\n\n    modname = basename(modpath)[:-3]\n    relmodpath = None\n    if pkg:\n        for pkgpath in pkg.__path__:\n            if path_is_subpath(modpath, pkgpath):\n                # for now relying on having .py extension -- assertion above\n                relmodpath = '.' + relpath(modpath[:-3], pkgpath).replace(sep, '.')\n                break\n\n    try:\n        if relmodpath:\n            from importlib import import_module\n            mod = import_module(relmodpath, pkg.__name__)\n        else:\n            dirname_ = dirname(modpath)\n            try:\n                sys.path.insert(0, dirname_)\n                mod = __import__(modname, level=0)\n            finally:\n                if dirname_ in sys.path:\n                    sys.path.pop(sys.path.index(dirname_))\n                else:\n                    log(\"Expected path %s to be within sys.path, but it was gone!\" % dirname_)\n    except Exception as e:\n        from datalad.dochelpers import exc_str\n        raise RuntimeError(\n            \"Failed to import module from %s: %s\" % (modpath, exc_str(e)))\n\n    return mod\n\n\ndef get_encoding_info():\n    \"\"\"Return a dictionary with various encoding/locale information\"\"\"\n    import sys, locale\n    from collections import OrderedDict\n    return OrderedDict([\n        ('default', sys.getdefaultencoding()),\n        ('filesystem', sys.getfilesystemencoding()),\n        ('locale.prefered', locale.getpreferredencoding()),\n    ])\n\n\ndef get_envvars_info():\n    from collections import OrderedDict\n    envs = []\n    for var, val in os.environ.items():\n        if (\n                var.startswith('PYTHON') or\n                var.startswith('LC_') or\n                var.startswith('GIT_') or\n                var in ('LANG', 'LANGUAGE', 'PATH')\n        ):\n            envs.append((var, val))\n    return OrderedDict(envs)\n\n\n# This class is modified from Snakemake (v5.1.4)\nclass SequenceFormatter(string.Formatter):\n    \"\"\"string.Formatter subclass with special behavior for sequences.\n\n    This class delegates formatting of individual elements to another\n    formatter object. Non-list objects are formatted by calling the\n    delegate formatter's \"format_field\" method. List-like objects\n    (list, tuple, set, frozenset) are formatted by formatting each\n    element of the list according to the specified format spec using\n    the delegate formatter and then joining the resulting strings with\n    a separator (space by default).\n    \"\"\"\n\n    def __init__(self, separator=\" \", element_formatter=string.Formatter(),\n                 *args, **kwargs):\n        self.separator = separator\n        self.element_formatter = element_formatter\n\n    def format_element(self, elem, format_spec):\n        \"\"\"Format a single element\n\n        For sequences, this is called once for each element in a\n        sequence. For anything else, it is called on the entire\n        object. It is intended to be overridden in subclases.\n        \"\"\"\n        return self.element_formatter.format_field(elem, format_spec)\n\n    def format_field(self, value, format_spec):\n        if isinstance(value, (list, tuple, set, frozenset)):\n            return self.separator.join(self.format_element(v, format_spec)\n                                       for v in value)\n        else:\n            return self.format_element(value, format_spec)\n\n\n# TODO: eventually we might want to make use of attr module\nclass File(object):\n    \"\"\"Helper for a file entry in the create_tree/@with_tree\n\n    It allows to define additional settings for entries\n    \"\"\"\n    def __init__(self, name, executable=False):\n        \"\"\"\n\n        Parameters\n        ----------\n        name : str\n          Name of the file\n        executable: bool, optional\n          Make it executable\n        \"\"\"\n        self.name = name\n        self.executable = executable\n\n    def __str__(self):\n        return self.name\n\n\ndef create_tree_archive(path, name, load, overwrite=False, archives_leading_dir=True):\n    \"\"\"Given an archive `name`, create under `path` with specified `load` tree\n    \"\"\"\n    from datalad.support.archives import compress_files\n    dirname = file_basename(name)\n    full_dirname = op.join(path, dirname)\n    os.makedirs(full_dirname)\n    create_tree(full_dirname, load, archives_leading_dir=archives_leading_dir)\n    # create archive\n    if archives_leading_dir:\n        compress_files([dirname], name, path=path, overwrite=overwrite)\n    else:\n        compress_files(list(map(op.basename, glob.glob(opj(full_dirname, '*')))),\n                       opj(op.pardir, name),\n                       path=op.join(path, dirname),\n                       overwrite=overwrite)\n    # remove original tree\n    rmtree(full_dirname)\n\n\ndef create_tree(path, tree, archives_leading_dir=True, remove_existing=False):\n    \"\"\"Given a list of tuples (name, load) create such a tree\n\n    if load is a tuple itself -- that would create either a subtree or an archive\n    with that content and place it into the tree if name ends with .tar.gz\n    \"\"\"\n    lgr.log(5, \"Creating a tree under %s\", path)\n    if not op.exists(path):\n        os.makedirs(path)\n\n    if isinstance(tree, dict):\n        tree = tree.items()\n\n    for file_, load in tree:\n        if isinstance(file_, File):\n            executable = file_.executable\n            name = file_.name\n        else:\n            executable = False\n            name = file_\n        full_name = op.join(path, name)\n        if remove_existing and op.lexists(full_name):\n            rmtree(full_name, chmod_files=True)\n        if isinstance(load, (tuple, list, dict)):\n            if name.endswith('.tar.gz') or name.endswith('.tar') or name.endswith('.zip'):\n                create_tree_archive(\n                    path, name, load,\n                    archives_leading_dir=archives_leading_dir)\n            else:\n                create_tree(\n                    full_name, load,\n                    archives_leading_dir=archives_leading_dir,\n                    remove_existing=remove_existing)\n        else:\n            open_func = open\n            if full_name.endswith('.gz'):\n                open_func = gzip.open\n            with open_func(full_name, \"wb\") as f:\n                f.write(ensure_bytes(load, 'utf-8'))\n        if executable:\n            os.chmod(full_name, os.stat(full_name).st_mode | stat.S_IEXEC)\n\n\ndef get_suggestions_msg(values, known, sep=\"\\n        \"):\n    \"\"\"Return a formatted string with suggestions for values given the known ones\n    \"\"\"\n    import difflib\n    suggestions = []\n    for value in ensure_list(values):  # might not want to do it if we change presentation below\n        suggestions += difflib.get_close_matches(value, known)\n    suggestions = unique(suggestions)\n    msg = \"Did you mean any of these?\"\n    if suggestions:\n        if '\\n' in sep:\n            # if separator includes new line - we add entire separator right away\n            msg += sep\n        else:\n            msg += ' '\n        return msg + \"%s\\n\" % sep.join(suggestions)\n    return ''\n\n\ndef bytes2human(n, format='%(value).1f %(symbol)sB'):\n    \"\"\"\n    Convert n bytes into a human readable string based on format.\n    symbols can be either \"customary\", \"customary_ext\", \"iec\" or \"iec_ext\",\n    see: http://goo.gl/kTQMs\n\n      >>> from datalad.utils import bytes2human\n      >>> bytes2human(1)\n      '1.0 B'\n      >>> bytes2human(1024)\n      '1.0 KB'\n      >>> bytes2human(1048576)\n      '1.0 MB'\n      >>> bytes2human(1099511627776127398123789121)\n      '909.5 YB'\n\n      >>> bytes2human(10000, \"%(value).1f %(symbol)s/sec\")\n      '9.8 K/sec'\n\n      >>> # precision can be adjusted by playing with %f operator\n      >>> bytes2human(10000, format=\"%(value).5f %(symbol)s\")\n      '9.76562 K'\n\n    Taken from: http://goo.gl/kTQMs and subsequently simplified\n    Original Author: Giampaolo Rodola' <g.rodola [AT] gmail [DOT] com>\n    License: MIT\n    \"\"\"\n    n = int(n)\n    if n < 0:\n        raise ValueError(\"n < 0\")\n    symbols = ('', 'K', 'M', 'G', 'T', 'P', 'E', 'Z', 'Y')\n    prefix = {}\n    for i, s in enumerate(symbols[1:]):\n        prefix[s] = 1 << (i + 1) * 10\n    for symbol in reversed(symbols[1:]):\n        if n >= prefix[symbol]:\n            value = float(n) / prefix[symbol]\n            return format % locals()\n    return format % dict(symbol=symbols[0], value=n)\n\n\ndef quote_cmdlinearg(arg):\n    \"\"\"Perform platform-appropriate argument quoting\"\"\"\n    # https://stackoverflow.com/a/15262019\n    return '\"{}\"'.format(\n        arg.replace('\"', '\"\"')\n    ) if on_windows else shlex_quote(arg)\n\n\ndef split_cmdline(s):\n    \"\"\"Perform platform-appropriate command line splitting.\n\n    Identical to `shlex.split()` on non-windows platforms.\n\n    Modified from https://stackoverflow.com/a/35900070\n    \"\"\"\n    if not on_windows:\n        return shlex_split(s)\n\n    # the rest is for windows\n    RE_CMD_LEX = r'''\"((?:\"\"|\\\\[\"\\\\]|[^\"])*)\"?()|(\\\\\\\\(?=\\\\*\")|\\\\\")|(&&?|\\|\\|?|\\d?>|[<])|([^\\s\"&|<>]+)|(\\s+)|(.)'''\n\n    args = []\n    accu = None   # collects pieces of one arg\n    for qs, qss, esc, pipe, word, white, fail in re.findall(RE_CMD_LEX, s):\n        if word:\n            pass   # most frequent\n        elif esc:\n            word = esc[1]\n        elif white or pipe:\n            if accu is not None:\n                args.append(accu)\n            if pipe:\n                args.append(pipe)\n            accu = None\n            continue\n        elif fail:\n            raise ValueError(\"invalid or incomplete shell string\")\n        elif qs:\n            word = qs.replace('\\\\\"', '\"').replace('\\\\\\\\', '\\\\')\n            if platform == 0:\n                word = word.replace('\"\"', '\"')\n        else:\n            word = qss   # may be even empty; must be last\n\n        accu = (accu or '') + word\n\n    if accu is not None:\n        args.append(accu)\n\n    return args\n\n\ndef get_wrapped_class(wrapped):\n    \"\"\"Determine the command class a wrapped __call__ belongs to\"\"\"\n    mod = sys.modules[wrapped.__module__]\n    command_class_name = wrapped.__qualname__.split('.')[-2]\n    _func_class = mod.__dict__[command_class_name]\n    lgr.debug(\"Determined class of decorated function: %s\", _func_class)\n    return _func_class\n\n\n# TODO whenever we feel ready for English kill the compat block below\nassure_tuple_or_list = ensure_tuple_or_list\nassure_iter = ensure_iter\nassure_list = ensure_list\nassure_list_from_str = ensure_list_from_str\nassure_dict_from_str = ensure_dict_from_str\nassure_bytes = ensure_bytes\nassure_unicode = ensure_unicode\nassure_bool = ensure_bool\nassure_dir = ensure_dir\n\n\nlgr.log(5, \"Done importing datalad.utils\")\n",
            "new_file_content": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\nimport collections\nimport hashlib\nimport re\nimport builtins\nimport time\n\ntry:\n    from collections.abc import Callable\nexcept ImportError:  # Python <= 3.3\n    from collections import Callable\n\nimport logging\nimport shutil\nimport os\nimport sys\nimport tempfile\nimport platform\nimport gc\nimport glob\nimport gzip\nimport string\nimport warnings\nimport wrapt\n\nfrom copy import copy as shallow_copy\nfrom contextlib import contextmanager\nfrom functools import wraps\nfrom time import sleep\nimport inspect\nfrom itertools import tee\n\nimport os.path as op\nfrom os.path import sep as dirsep\nfrom os.path import commonprefix\nfrom os.path import curdir, basename, exists, realpath, islink, join as opj\nfrom os.path import isabs, normpath, expandvars, expanduser, abspath, sep\nfrom os.path import isdir\nfrom os.path import relpath\nfrom os.path import stat\nfrom os.path import dirname\nfrom os.path import split as psplit\nimport posixpath\n\nfrom shlex import (\n    quote as shlex_quote,\n    split as shlex_split,\n)\n\n# from datalad.dochelpers import get_docstring_split\nfrom datalad.consts import TIMESTAMP_FMT\n\n\nunicode_srctypes = str, bytes\n\n\nlgr = logging.getLogger(\"datalad.utils\")\n\nlgr.log(5, \"Importing datalad.utils\")\n#\n# Some useful variables\n#\nplatform_system = platform.system().lower()\non_windows = platform_system == 'windows'\non_osx = platform_system == 'darwin'\non_linux = platform_system == 'linux'\non_msys_tainted_paths = on_windows \\\n                        and 'MSYS_NO_PATHCONV' not in os.environ \\\n                        and os.environ.get('MSYSTEM', '')[:4] in ('MSYS', 'MING')\n\n\ndef get_linux_distribution():\n    \"\"\"Compatibility wrapper for {platform,distro}.linux_distribution().\n    \"\"\"\n    if hasattr(platform, \"linux_distribution\"):\n        # Use deprecated (but faster) method if it's available.\n        with warnings.catch_warnings():\n            warnings.filterwarnings(\"ignore\", category=DeprecationWarning)\n            result = platform.linux_distribution()\n    else:\n        import distro  # We require this for Python 3.8 and above.\n        result = distro.linux_distribution(full_distribution_name=False)\n    return result\n\n\ntry:\n    linux_distribution_name, linux_distribution_release \\\n        = get_linux_distribution()[:2]\n    on_debian_wheezy = on_linux \\\n                       and linux_distribution_name == 'debian' \\\n                       and linux_distribution_release.startswith('7.')\nexcept:  # pragma: no cover\n    # MIH: IndexError?\n    on_debian_wheezy = False\n    linux_distribution_name = linux_distribution_release = None\n\n# Maximal length of cmdline string\n# Query the system and use hardcoded \"knowledge\" if None\n# probably   getconf ARG_MAX   might not be available\n# The last one would be the most conservative/Windows\nCMD_MAX_ARG_HARDCODED = 2097152 if on_linux else 262144 if on_osx else 32767\ntry:\n    CMD_MAX_ARG = os.sysconf('SC_ARG_MAX')\n    assert CMD_MAX_ARG > 0\n    if sys.version_info[:2] == (3, 4):\n        # workaround for some kind of a bug which comes up with python 3.4\n        # see https://github.com/datalad/datalad/issues/3150\n        CMD_MAX_ARG = min(CMD_MAX_ARG, CMD_MAX_ARG_HARDCODED)\nexcept Exception as exc:\n    # ATM (20181005) SC_ARG_MAX available only on POSIX systems\n    # so exception would be thrown e.g. on Windows, or\n    # somehow during Debian build for nd14.04 it is coming up with -1:\n    # https://github.com/datalad/datalad/issues/3015\n    CMD_MAX_ARG = CMD_MAX_ARG_HARDCODED\n    lgr.debug(\n        \"Failed to query or got useless SC_ARG_MAX sysconf, \"\n        \"will use hardcoded value: %s\", exc)\n# Even with all careful computations we do, due to necessity to account for\n# environment and what not, we still could not figure out \"exact\" way to\n# estimate it, but it was shown that 300k safety margin on linux was sufficient.\n# https://github.com/datalad/datalad/pull/2977#issuecomment-436264710\n# 300k is ~15%, so to be safe, and for paranoid us we will just use up to 50%\n# of the length for \"safety margin\".  We might probably still blow due to\n# env vars, unicode, etc...  so any hard limit imho is not a proper solution\nCMD_MAX_ARG = int(0.5 * CMD_MAX_ARG)\nlgr.debug(\n    \"Maximal length of cmdline string (adjusted for safety margin): %d\",\n    CMD_MAX_ARG)\n\n#\n# Little helpers\n#\n\n# `getargspec` has been deprecated in Python 3.\nif hasattr(inspect, \"getfullargspec\"):\n    ArgSpecFake = collections.namedtuple(\n        \"ArgSpecFake\", [\"args\", \"varargs\", \"keywords\", \"defaults\"])\n\n    def getargspec(func):\n        return ArgSpecFake(*inspect.getfullargspec(func)[:4])\nelse:\n    getargspec = inspect.getargspec\n\n\ndef get_func_kwargs_doc(func):\n    \"\"\" Provides args for a function\n\n    Parameters\n    ----------\n    func: str\n      name of the function from which args are being requested\n\n    Returns\n    -------\n    list\n      of the args that a function takes in\n    \"\"\"\n    return getargspec(func)[0]\n\n    # TODO: format error message with descriptions of args\n    # return [repr(dict(get_docstring_split(func)[1]).get(x)) for x in getargspec(func)[0]]\n\n\ndef any_re_search(regexes, value):\n    \"\"\"Return if any of regexes (list or str) searches succesfully for value\"\"\"\n    for regex in ensure_tuple_or_list(regexes):\n        if re.search(regex, value):\n            return True\n    return False\n\n\ndef not_supported_on_windows(msg=None):\n    \"\"\"A little helper to be invoked to consistently fail whenever functionality is\n    not supported (yet) on Windows\n    \"\"\"\n    if on_windows:\n        raise NotImplementedError(\"This functionality is not yet implemented for Windows OS\"\n                                  + (\": %s\" % msg if msg else \"\"))\n\n\ndef shortened_repr(value, l=30):\n    try:\n        if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):\n            value_repr = repr(value)\n            if not value_repr.startswith('<') and len(value_repr) > l:\n                value_repr = \"<<%s++%d chars++%s>>\" % (\n                    value_repr[:l - 16],\n                    len(value_repr) - (l - 16 + 4),\n                    value_repr[-4:]\n                )\n            elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':\n                raise ValueError(\"I hate those useless long reprs\")\n        else:\n            raise ValueError(\"gimme class\")\n    except Exception as e:\n        value_repr = \"<%s>\" % value.__class__.__name__.split('.')[-1]\n    return value_repr\n\n\ndef __auto_repr__(obj):\n    attr_names = tuple()\n    if hasattr(obj, '__dict__'):\n        attr_names += tuple(obj.__dict__.keys())\n    if hasattr(obj, '__slots__'):\n        attr_names += tuple(obj.__slots__)\n\n    items = []\n    for attr in sorted(set(attr_names)):\n        if attr.startswith('_'):\n            continue\n        value = getattr(obj, attr)\n        # TODO:  should we add this feature to minimize some talktative reprs\n        # such as of URL?\n        #if value is None:\n        #    continue\n        items.append(\"%s=%s\" % (attr, shortened_repr(value)))\n\n    return \"%s(%s)\" % (obj.__class__.__name__, ', '.join(items))\n\n\ndef auto_repr(cls):\n    \"\"\"Decorator for a class to assign it an automagic quick and dirty __repr__\n\n    It uses public class attributes to prepare repr of a class\n\n    Original idea: http://stackoverflow.com/a/27799004/1265472\n    \"\"\"\n\n    cls.__repr__ = __auto_repr__\n    return cls\n\n\ndef _is_stream_tty(stream):\n    try:\n        # TODO: check on windows if hasattr check would work correctly and\n        # add value:\n        return stream.isatty()\n    except ValueError as exc:\n        # Who knows why it is a ValueError, but let's try to be specific\n        # If there is a problem with I/O - non-interactive, otherwise reraise\n        if \"I/O\" in str(exc):\n            return False\n        raise\n\n\ndef is_interactive():\n    \"\"\"Return True if all in/outs are open and tty.\n\n    Note that in a somewhat abnormal case where e.g. stdin is explicitly\n    closed, and any operation on it would raise a\n    `ValueError(\"I/O operation on closed file\")` exception, this function\n    would just return False, since the session cannot be used interactively.\n    \"\"\"\n    return all(_is_stream_tty(s) for s in (sys.stdin, sys.stdout, sys.stderr))\n\n\ndef get_ipython_shell():\n    \"\"\"Detect if running within IPython and returns its `ip` (shell) object\n\n    Returns None if not under ipython (no `get_ipython` function)\n    \"\"\"\n    try:\n        return get_ipython()\n    except NameError:\n        return None\n\n\ndef md5sum(filename):\n    \"\"\"Compute an MD5 sum for the given file\n    \"\"\"\n    from datalad.support.digests import Digester\n    return Digester(digests=['md5'])(filename)['md5']\n\n\ndef sorted_files(dout):\n    \"\"\"Return a (sorted) list of files under dout\n    \"\"\"\n    return sorted(sum([[opj(r, f)[len(dout) + 1:] for f in files]\n                       for r, d, files in os.walk(dout)\n                       if not '.git' in r], []))\n\n_encoded_dirsep = r'\\\\'  if on_windows else r'/'\n_VCS_REGEX = r'%s\\.(?:git|gitattributes|svn|bzr|hg)(?:%s|$)' % (\n    _encoded_dirsep, _encoded_dirsep)\n_DATALAD_REGEX = r'%s\\.(?:datalad)(?:%s|$)' % (\n    _encoded_dirsep, _encoded_dirsep)\n\n\ndef find_files(regex, topdir=curdir, exclude=None, exclude_vcs=True, exclude_datalad=False, dirs=False):\n    \"\"\"Generator to find files matching regex\n\n    Parameters\n    ----------\n    regex: basestring\n    exclude: basestring, optional\n      Matches to exclude\n    exclude_vcs:\n      If True, excludes commonly known VCS subdirectories.  If string, used\n      as regex to exclude those files (regex: `%r`)\n    exclude_datalad:\n      If True, excludes files known to be datalad meta-data files (e.g. under\n      .datalad/ subdirectory) (regex: `%r`)\n    topdir: basestring, optional\n      Directory where to search\n    dirs: bool, optional\n      Whether to match directories as well as files\n    \"\"\"\n    for dirpath, dirnames, filenames in os.walk(topdir):\n        names = (dirnames + filenames) if dirs else filenames\n        # TODO: might want to uniformize on windows to use '/'\n        paths = (opj(dirpath, name) for name in names)\n        for path in filter(re.compile(regex).search, paths):\n            path = path.rstrip(dirsep)\n            if exclude and re.search(exclude, path):\n                continue\n            if exclude_vcs and re.search(_VCS_REGEX, path):\n                continue\n            if exclude_datalad and re.search(_DATALAD_REGEX, path):\n                continue\n            yield path\nfind_files.__doc__ %= (_VCS_REGEX, _DATALAD_REGEX)\n\n\ndef expandpath(path, force_absolute=True):\n    \"\"\"Expand all variables and user handles in a path.\n\n    By default return an absolute path\n    \"\"\"\n    path = expandvars(expanduser(path))\n    if force_absolute:\n        path = abspath(path)\n    return path\n\n\ndef posix_relpath(path, start=None):\n    \"\"\"Behave like os.path.relpath, but always return POSIX paths...\n\n    on any platform.\"\"\"\n    # join POSIX style\n    return posixpath.join(\n        # split and relpath native style\n        # python2.7 ntpath implementation of relpath cannot handle start=None\n        *psplit(\n            relpath(path, start=start if start is not None else '')))\n\n\ndef is_explicit_path(path):\n    \"\"\"Return whether a path explicitly points to a location\n\n    Any absolute path, or relative path starting with either '../' or\n    './' is assumed to indicate a location on the filesystem. Any other\n    path format is not considered explicit.\"\"\"\n    path = expandpath(path, force_absolute=False)\n    return isabs(path) \\\n        or path.startswith(os.curdir + os.sep) \\\n        or path.startswith(os.pardir + os.sep)\n\n\n# handle this dance once, and import pathlib from here\n# in all other places\n\nfrom pathlib import (\n    Path,\n    PurePath,\n    PurePosixPath,\n)\n\n\ndef rotree(path, ro=True, chmod_files=True):\n    \"\"\"To make tree read-only or writable\n\n    Parameters\n    ----------\n    path : string\n      Path to the tree/directory to chmod\n    ro : bool, optional\n      Whether to make it R/O (default) or RW\n    chmod_files : bool, optional\n      Whether to operate also on files (not just directories)\n    \"\"\"\n    if ro:\n        chmod = lambda f: os.chmod(f, os.stat(f).st_mode & ~stat.S_IWRITE)\n    else:\n        chmod = lambda f: os.chmod(f, os.stat(f).st_mode | stat.S_IWRITE | stat.S_IREAD)\n\n    for root, dirs, files in os.walk(path, followlinks=False):\n        if chmod_files:\n            for f in files:\n                fullf = opj(root, f)\n                # might be the \"broken\" symlink which would fail to stat etc\n                if exists(fullf):\n                    chmod(fullf)\n        chmod(root)\n\n\ndef rmtree(path, chmod_files='auto', children_only=False, *args, **kwargs):\n    \"\"\"To remove git-annex .git it is needed to make all files and directories writable again first\n\n    Parameters\n    ----------\n    chmod_files : string or bool, optional\n       Whether to make files writable also before removal.  Usually it is just\n       a matter of directories to have write permissions.\n       If 'auto' it would chmod files on windows by default\n    children_only : bool, optional\n       If set, all files and subdirectories would be removed while the path\n       itself (must be a directory) would be preserved\n    `*args` :\n    `**kwargs` :\n       Passed into shutil.rmtree call\n    \"\"\"\n    # Give W permissions back only to directories, no need to bother with files\n    if chmod_files == 'auto':\n        chmod_files = on_windows\n    # TODO:  yoh thinks that if we could quickly check our Flyweight for\n    #        repos if any of them is under the path, and could call .precommit\n    #        on those to possibly stop batched processes etc, we did not have\n    #        to do it on case by case\n    # Check for open files\n    assert_no_open_files(path)\n\n    if children_only:\n        if not os.path.isdir(path):\n            raise ValueError(\"Can remove children only of directories\")\n        for p in os.listdir(path):\n            rmtree(op.join(path, p))\n        return\n    if not (os.path.islink(path) or not os.path.isdir(path)):\n        rotree(path, ro=False, chmod_files=chmod_files)\n        _rmtree(path, *args, **kwargs)\n    else:\n        # just remove the symlink\n        unlink(path)\n\n\ndef rmdir(path, *args, **kwargs):\n    \"\"\"os.rmdir with our optional checking for open files\"\"\"\n    assert_no_open_files(path)\n    os.rmdir(path)\n\n\ndef get_open_files(path, log_open=False):\n    \"\"\"Get open files under a path\n\n    Parameters\n    ----------\n    path : str\n      File or directory to check for open files under\n    log_open : bool or int\n      If set - logger level to use\n\n    Returns\n    -------\n    dict\n      path : pid\n\n    \"\"\"\n    # Original idea: https://stackoverflow.com/a/11115521/1265472\n    import psutil\n    files = {}\n    # since the ones returned by psutil would not be aware of symlinks in the\n    # path we should also get realpath for path\n    path = realpath(path)\n    for proc in psutil.process_iter():\n        try:\n            open_paths = [p.path for p in proc.open_files()] + [proc.cwd()]\n            for p in open_paths:\n                # note: could be done more efficiently so we do not\n                # renormalize path over and over again etc\n                if path_startswith(p, path):\n                    files[p] = proc\n        # Catch a race condition where a process ends\n        # before we can examine its files\n        except psutil.NoSuchProcess:\n            pass\n        except psutil.AccessDenied:\n            pass\n\n    if files and log_open:\n        lgr.log(log_open, \"Open files under %s: %s\", path, files)\n    return files\n\n\n_assert_no_open_files_cfg = os.environ.get('DATALAD_ASSERT_NO_OPEN_FILES')\nif _assert_no_open_files_cfg:\n    def assert_no_open_files(path):\n        files = get_open_files(path, log_open=40)\n        if _assert_no_open_files_cfg == 'assert':\n            assert not files\n        elif files:\n            if _assert_no_open_files_cfg == 'pdb':\n                import pdb\n                pdb.set_trace()\n            elif _assert_no_open_files_cfg == 'epdb':\n                import epdb\n                epdb.serve()\n            pass\n        # otherwise we would just issue that error message in the log\nelse:\n    def assert_no_open_files(*args, **kwargs):\n        pass\n\n\ndef rmtemp(f, *args, **kwargs):\n    \"\"\"Wrapper to centralize removing of temp files so we could keep them around\n\n    It will not remove the temporary file/directory if DATALAD_TESTS_TEMP_KEEP\n    environment variable is defined\n    \"\"\"\n    if not os.environ.get('DATALAD_TESTS_TEMP_KEEP'):\n        if not os.path.lexists(f):\n            lgr.debug(\"Path %s does not exist, so can't be removed\" % f)\n            return\n        lgr.log(5, \"Removing temp file: %s\" % f)\n        # Can also be a directory\n        if os.path.isdir(f):\n            rmtree(f, *args, **kwargs)\n        else:\n            unlink(f)\n    else:\n        lgr.info(\"Keeping temp file: %s\" % f)\n\n\ndef file_basename(name, return_ext=False):\n    \"\"\"\n    Strips up to 2 extensions of length up to 4 characters and starting with alpha\n    not a digit, so we could get rid of .tar.gz etc\n    \"\"\"\n    bname = basename(name)\n    fbname = re.sub(r'(\\.[a-zA-Z_]\\S{1,4}){0,2}$', '', bname)\n    if return_ext:\n        return fbname, bname[len(fbname) + 1:]\n    else:\n        return fbname\n\n\ndef escape_filename(filename):\n    \"\"\"Surround filename in \"\" and escape \" in the filename\n    \"\"\"\n    filename = filename.replace('\"', r'\\\"').replace('`', r'\\`')\n    filename = '\"%s\"' % filename\n    return filename\n\n\ndef encode_filename(filename):\n    \"\"\"Encode unicode filename\n    \"\"\"\n    if isinstance(filename, str):\n        return filename.encode(sys.getfilesystemencoding())\n    else:\n        return filename\n\n\ndef decode_input(s):\n    \"\"\"Given input string/bytes, decode according to stdin codepage (or UTF-8)\n    if not defined\n\n    If fails -- issue warning and decode allowing for errors\n    being replaced\n    \"\"\"\n    if isinstance(s, str):\n        return s\n    else:\n        encoding = sys.stdin.encoding or 'UTF-8'\n        try:\n            return s.decode(encoding)\n        except UnicodeDecodeError as exc:\n            lgr.warning(\n                \"Failed to decode input string using %s encoding. \"\n                \"Decoding allowing for errors\", encoding)\n            return s.decode(encoding, errors='replace')\n\n\nif on_windows:\n    def lmtime(filepath, mtime):\n        \"\"\"Set mtime for files.  On Windows a merely adapter to os.utime\n        \"\"\"\n        os.utime(filepath, (time.time(), mtime))\nelse:\n    def lmtime(filepath, mtime):\n        \"\"\"Set mtime for files, while not de-referencing symlinks.\n\n        To overcome absence of os.lutime\n\n        Works only on linux and OSX ATM\n        \"\"\"\n        from .cmd import Runner\n        # convert mtime to format touch understands [[CC]YY]MMDDhhmm[.SS]\n        smtime = time.strftime(\"%Y%m%d%H%M.%S\", time.localtime(mtime))\n        lgr.log(3, \"Setting mtime for %s to %s == %s\", filepath, mtime, smtime)\n        Runner().run(['touch', '-h', '-t', '%s' % smtime, filepath])\n        rfilepath = realpath(filepath)\n        if islink(filepath) and exists(rfilepath):\n            # trust noone - adjust also of the target file\n            # since it seemed like downloading under OSX (was it using curl?)\n            # didn't bother with timestamps\n            lgr.log(3, \"File is a symlink to %s Setting mtime for it to %s\",\n                    rfilepath, mtime)\n            os.utime(rfilepath, (time.time(), mtime))\n        # doesn't work on OSX\n        # Runner().run(['touch', '-h', '-d', '@%s' % mtime, filepath])\n\n\ndef ensure_tuple_or_list(obj):\n    \"\"\"Given an object, wrap into a tuple if not list or tuple\n    \"\"\"\n    if isinstance(obj, (list, tuple)):\n        return obj\n    return (obj,)\n\n\ndef ensure_iter(s, cls, copy=False, iterate=True):\n    \"\"\"Given not a list, would place it into a list. If None - empty list is returned\n\n    Parameters\n    ----------\n    s: list or anything\n    cls: class\n      Which iterable class to ensure\n    copy: bool, optional\n      If correct iterable is passed, it would generate its shallow copy\n    iterate: bool, optional\n      If it is not a list, but something iterable (but not a str)\n      iterate over it.\n    \"\"\"\n\n    if isinstance(s, cls):\n        return s if not copy else shallow_copy(s)\n    elif isinstance(s, str):\n        return cls((s,))\n    elif iterate and hasattr(s, '__iter__'):\n        return cls(s)\n    elif s is None:\n        return cls()\n    else:\n        return cls((s,))\n\n\ndef ensure_list(s, copy=False, iterate=True):\n    \"\"\"Given not a list, would place it into a list. If None - empty list is returned\n\n    Parameters\n    ----------\n    s: list or anything\n    copy: bool, optional\n      If list is passed, it would generate a shallow copy of the list\n    iterate: bool, optional\n      If it is not a list, but something iterable (but not a str)\n      iterate over it.\n    \"\"\"\n    return ensure_iter(s, list, copy=copy, iterate=iterate)\n\n\ndef ensure_list_from_str(s, sep='\\n'):\n    \"\"\"Given a multiline string convert it to a list of return None if empty\n\n    Parameters\n    ----------\n    s: str or list\n    \"\"\"\n\n    if not s:\n        return None\n\n    if isinstance(s, list):\n        return s\n    return s.split(sep)\n\n\ndef ensure_dict_from_str(s, **kwargs):\n    \"\"\"Given a multiline string with key=value items convert it to a dictionary\n\n    Parameters\n    ----------\n    s: str or dict\n\n    Returns None if input s is empty\n    \"\"\"\n\n    if not s:\n        return None\n\n    if isinstance(s, dict):\n        return s\n\n    out = {}\n    for value_str in ensure_list_from_str(s, **kwargs):\n        if '=' not in value_str:\n            raise ValueError(\"{} is not in key=value format\".format(repr(value_str)))\n        k, v = value_str.split('=', 1)\n        if k in out:\n            err = \"key {} was already defined in {}, but new value {} was provided\".format(k, out, v)\n            raise ValueError(err)\n        out[k] = v\n    return out\n\n\ndef ensure_bytes(s, encoding='utf-8'):\n    \"\"\"Convert/encode unicode string to bytes.\n\n    If `s` isn't a string, return it as is.\n\n    Parameters\n    ----------\n    encoding: str, optional\n      Encoding to use.  \"utf-8\" is the default\n    \"\"\"\n    if not isinstance(s, str):\n        return s\n    return s.encode(encoding)\n\n\ndef ensure_unicode(s, encoding=None, confidence=None):\n    \"\"\"Convert/decode bytestring to unicode.\n\n    If `s` isn't a bytestring, return it as is.\n\n    Parameters\n    ----------\n    encoding: str, optional\n      Encoding to use.  If None, \"utf-8\" is tried, and then if not a valid\n      UTF-8, encoding will be guessed\n    confidence: float, optional\n      A value between 0 and 1, so if guessing of encoding is of lower than\n      specified confidence, ValueError is raised\n    \"\"\"\n    if not isinstance(s, bytes):\n        return s\n    if encoding is None:\n        # Figure out encoding, defaulting to 'utf-8' which is our common\n        # target in contemporary digital society\n        try:\n            return s.decode('utf-8')\n        except UnicodeDecodeError as exc:\n            from .dochelpers import exc_str\n            lgr.debug(\"Failed to decode a string as utf-8: %s\", exc_str(exc))\n        # And now we could try to guess\n        from chardet import detect\n        enc = detect(s)\n        denc = enc.get('encoding', None)\n        if denc:\n            denc_confidence = enc.get('confidence', 0)\n            if confidence is not None and  denc_confidence < confidence:\n                raise ValueError(\n                    \"Failed to auto-detect encoding with high enough \"\n                    \"confidence. Highest confidence was %s for %s\"\n                    % (denc_confidence, denc)\n                )\n            return s.decode(denc)\n        else:\n            raise ValueError(\n                \"Could not decode value as utf-8, or to guess its encoding: %s\"\n                % repr(s)\n            )\n    else:\n        return s.decode(encoding)\n\n\ndef ensure_bool(s):\n    \"\"\"Convert value into boolean following convention for strings\n\n    to recognize on,True,yes as True, off,False,no as False\n    \"\"\"\n    if isinstance(s, str):\n        if s.isdigit():\n            return bool(int(s))\n        sl = s.lower()\n        if sl in {'y', 'yes', 'true', 'on'}:\n            return True\n        elif sl in {'n', 'no', 'false', 'off'}:\n            return False\n        else:\n            raise ValueError(\"Do not know how to treat %r as a boolean\" % s)\n    return bool(s)\n\n\ndef as_unicode(val, cast_types=object):\n    \"\"\"Given an arbitrary value, would try to obtain unicode value of it\n    \n    For unicode it would return original value, for python2 str or python3\n    bytes it would use ensure_unicode, for None - an empty (unicode) string,\n    and for any other type (see `cast_types`) - would apply the unicode \n    constructor.  If value is not an instance of `cast_types`, TypeError\n    is thrown\n    \n    Parameters\n    ----------\n    cast_types: type\n      Which types to cast to unicode by providing to constructor\n    \"\"\"\n    if val is None:\n        return u''\n    elif isinstance(val, str):\n        return val\n    elif isinstance(val, unicode_srctypes):\n        return ensure_unicode(val)\n    elif isinstance(val, cast_types):\n        return str(val)\n    else:\n        raise TypeError(\n            \"Value %r is not of any of known or provided %s types\"\n            % (val, cast_types))\n\n\ndef unique(seq, key=None, reverse=False):\n    \"\"\"Given a sequence return a list only with unique elements while maintaining order\n\n    This is the fastest solution.  See\n    https://www.peterbe.com/plog/uniqifiers-benchmark\n    and\n    http://stackoverflow.com/a/480227/1265472\n    for more information.\n    Enhancement -- added ability to compare for uniqueness using a key function\n\n    Parameters\n    ----------\n    seq:\n      Sequence to analyze\n    key: callable, optional\n      Function to call on each element so we could decide not on a full\n      element, but on its member etc\n    reverse: bool, optional\n      If True, uniqueness checked in the reverse order, so that the later ones\n      will take the order\n    \"\"\"\n    seen = set()\n    seen_add = seen.add\n\n    trans = reversed if reverse else lambda x: x\n\n    if not key:\n        out = [x for x in trans(seq) if not (x in seen or seen_add(x))]\n    else:\n        # OPT: could be optimized, since key is called twice, but for our cases\n        # should be just as fine\n        out = [x for x in trans(seq) if not (key(x) in seen or seen_add(key(x)))]\n\n    return out[::-1] if reverse else out\n\n\ndef all_same(items):\n    \"\"\"Quick check if all items are the same.\n\n    Identical to a check like len(set(items)) == 1 but\n    should be more efficient while working on generators, since would\n    return False as soon as any difference detected thus possibly avoiding\n    unnecessary evaluations\n    \"\"\"\n    first = True\n    first_item = None\n    for item in items:\n        if first:\n            first = False\n            first_item = item\n        else:\n            if item != first_item:\n                return False\n    # So we return False if was empty\n    return not first\n\n\ndef map_items(func, v):\n    \"\"\"A helper to apply `func` to all elements (keys and values) within dict\n\n    No type checking of values passed to func is done, so `func`\n    should be resilient to values which it should not handle\n\n    Initial usecase - apply_recursive(url_fragment, ensure_unicode)\n    \"\"\"\n    # map all elements within item\n    return v.__class__(\n        item.__class__(map(func, item))\n        for item in v.items()\n    )\n\n\ndef partition(items, predicate=bool):\n    \"\"\"Partition `items` by `predicate`.\n\n    Parameters\n    ----------\n    items : iterable\n    predicate : callable\n        A function that will be mapped over each element in `items`. The\n        elements will partitioned based on whether the return value is false or\n        true.\n\n    Returns\n    -------\n    A tuple with two generators, the first for 'false' items and the second for\n    'true' ones.\n\n    Notes\n    -----\n    Taken from Peter Otten's snippet posted at\n    https://nedbatchelder.com/blog/201306/filter_a_list_into_two_parts.html\n    \"\"\"\n    a, b = tee((predicate(item), item) for item in items)\n    return ((item for pred, item in a if not pred),\n            (item for pred, item in b if pred))\n\n\ndef generate_chunks(container, size):\n    \"\"\"Given a container, generate chunks from it with size up to `size`\n    \"\"\"\n    # There could be a \"smarter\" solution but I think this would suffice\n    assert size > 0,  \"Size should be non-0 positive\"\n    while container:\n        yield container[:size]\n        container = container[size:]\n\n\ndef generate_file_chunks(files, cmd=None):\n    \"\"\"Given a list of files, generate chunks of them to avoid exceding cmdline length\n\n    Parameters\n    ----------\n    files: list of str\n    cmd: str or list of str, optional\n      Command to account for as well\n    \"\"\"\n    files = ensure_list(files)\n    cmd = ensure_list(cmd)\n\n    maxl = max(map(len, files)) if files else 0\n    chunk_size = max(\n        1,  # should at least be 1. If blows then - not our fault\n        (CMD_MAX_ARG\n         - sum((len(x) + 3) for x in cmd)\n         - 4  # for '--' below\n         ) // (maxl + 3)  # +3 for possible quotes and a space\n    )\n    # TODO: additional treatment for \"too many arguments\"? although\n    # as https://github.com/datalad/datalad/issues/1883#issuecomment\n    # -436272758\n    # shows there seems to be no hardcoded limit on # of arguments,\n    # but may be we decide to go for smth like follow to be on safe side\n    # chunk_size = min(10240 - len(cmd), chunk_size)\n    file_chunks = generate_chunks(files, chunk_size)\n    return file_chunks\n\n\n#\n# Generators helpers\n#\n\ndef saved_generator(gen):\n    \"\"\"Given a generator returns two generators, where 2nd one just replays\n\n    So the first one would be going through the generated items and 2nd one\n    would be yielding saved items\n    \"\"\"\n    saved = []\n\n    def gen1():\n        for x in gen:  # iterating over original generator\n            saved.append(x)\n            yield x\n\n    def gen2():\n        for x in saved:  # yielding saved entries\n            yield x\n\n    return gen1(), gen2()\n\n\n#\n# Decorators\n#\ndef better_wraps(to_be_wrapped):\n    \"\"\"Decorator to replace `functools.wraps`\n\n    This is based on `wrapt` instead of `functools` and in opposition to `wraps`\n    preserves the correct signature of the decorated function.\n    It is written with the intention to replace the use of `wraps` without any\n    need to rewrite the actual decorators.\n    \"\"\"\n\n    @wrapt.decorator(adapter=to_be_wrapped)\n    def intermediator(to_be_wrapper, instance, args, kwargs):\n        return to_be_wrapper(*args, **kwargs)\n\n    return intermediator\n\n\n# Borrowed from pandas\n# Copyright: 2011-2014, Lambda Foundry, Inc. and PyData Development Team\n# License: BSD-3\ndef optional_args(decorator):\n    \"\"\"allows a decorator to take optional positional and keyword arguments.\n        Assumes that taking a single, callable, positional argument means that\n        it is decorating a function, i.e. something like this::\n\n            @my_decorator\n            def function(): pass\n\n        Calls decorator with decorator(f, `*args`, `**kwargs`)\"\"\"\n\n    @better_wraps(decorator)\n    def wrapper(*args, **kwargs):\n        def dec(f):\n            return decorator(f, *args, **kwargs)\n\n        is_decorating = not kwargs and len(args) == 1 and isinstance(args[0], Callable)\n        if is_decorating:\n            f = args[0]\n            args = []\n            return dec(f)\n        else:\n            return dec\n\n    return wrapper\n\n\n# TODO: just provide decorators for tempfile.mk* functions. This is ugly!\ndef get_tempfile_kwargs(tkwargs=None, prefix=\"\", wrapped=None):\n    \"\"\"Updates kwargs to be passed to tempfile. calls depending on env vars\n    \"\"\"\n    if tkwargs is None:\n        tkwargs_ = {}\n    else:\n        # operate on a copy of tkwargs to avoid any side-effects\n        tkwargs_ = tkwargs.copy()\n\n    # TODO: don't remember why I had this one originally\n    # if len(targs)<2 and \\\n    if 'prefix' not in tkwargs_:\n        tkwargs_['prefix'] = '_'.join(\n            ['datalad_temp'] +\n            ([prefix] if prefix else []) +\n            ([''] if (on_windows or not wrapped) else [wrapped.__name__]))\n\n    directory = os.environ.get('DATALAD_TESTS_TEMP_DIR')\n    if directory and 'dir' not in tkwargs_:\n        tkwargs_['dir'] = directory\n\n    return tkwargs_\n\n\n@optional_args\ndef line_profile(func):\n    \"\"\"Q&D helper to line profile the function and spit out stats\n    \"\"\"\n    import line_profiler\n    prof = line_profiler.LineProfiler()\n\n    @wraps(func)\n    def newfunc(*args, **kwargs):\n        try:\n            pfunc = prof(func)\n            return pfunc(*args, **kwargs)\n        finally:\n            prof.print_stats()\n    return newfunc\n\n\n# Borrowed from duecredit to wrap duecredit-handling to guarantee failsafe\ndef never_fail(f):\n    \"\"\"Assure that function never fails -- all exceptions are caught\n\n    Returns `None` if function fails internally.\n    \"\"\"\n    @wraps(f)\n    def wrapped_func(*args, **kwargs):\n        try:\n            return f(*args, **kwargs)\n        except Exception as e:\n            lgr.warning(\n                \"DataLad internal failure while running %s: %r. \"\n                \"Please report at https://github.com/datalad/datalad/issues\"\n                % (f, e)\n            )\n\n    if os.environ.get('DATALAD_ALLOW_FAIL', False):\n        return f\n    else:\n        return wrapped_func\n\n\n#\n# Context Managers\n#\n\n\n@contextmanager\ndef nothing_cm():\n    \"\"\"Just a dummy cm to programmically switch context managers\"\"\"\n    yield\n\n\n@contextmanager\ndef swallow_outputs():\n    \"\"\"Context manager to help consuming both stdout and stderr, and print()\n\n    stdout is available as cm.out and stderr as cm.err whenever cm is the\n    yielded context manager.\n    Internally uses temporary files to guarantee absent side-effects of swallowing\n    into StringIO which lacks .fileno.\n\n    print mocking is necessary for some uses where sys.stdout was already bound\n    to original sys.stdout, thus mocking it later had no effect. Overriding\n    print function had desired effect\n    \"\"\"\n\n    class StringIOAdapter(object):\n        \"\"\"Little adapter to help getting out/err values\n        \"\"\"\n        def __init__(self):\n            kw = get_tempfile_kwargs({}, prefix=\"outputs\")\n\n            self._out = open(tempfile.mktemp(**kw), 'w')\n            self._err = open(tempfile.mktemp(**kw), 'w')\n\n        def _read(self, h):\n            with open(h.name) as f:\n                return f.read()\n\n        @property\n        def out(self):\n            if not self._out.closed:\n                self._out.flush()\n            return self._read(self._out)\n\n        @property\n        def err(self):\n            if not self._err.closed:\n                self._err.flush()\n            return self._read(self._err)\n\n        @property\n        def handles(self):\n            return self._out, self._err\n\n        def cleanup(self):\n            self._out.close()\n            self._err.close()\n            out_name = self._out.name\n            err_name = self._err.name\n            del self._out\n            del self._err\n            gc.collect()\n            rmtemp(out_name)\n            rmtemp(err_name)\n\n    def fake_print(*args, **kwargs):\n        sep = kwargs.pop('sep', ' ')\n        end = kwargs.pop('end', '\\n')\n        file = kwargs.pop('file', sys.stdout)\n\n        if file in (oldout, olderr, sys.stdout, sys.stderr):\n            # we mock\n            try:\n                sys.stdout.write(sep.join(args) + end)\n            except UnicodeEncodeError as exc:\n                lgr.error(\n                    \"Failed to write to mocked stdout, got %s, continue as it \"\n                    \"didn't happen\",  exc)\n        else:\n            # must be some other file one -- leave it alone\n            oldprint(*args, sep=sep, end=end, file=file)\n\n    from .ui import ui\n    # preserve -- they could have been mocked already\n    oldprint = getattr(builtins, 'print')\n    oldout, olderr = sys.stdout, sys.stderr\n    olduiout = ui.out\n    adapter = StringIOAdapter()\n\n    try:\n        sys.stdout, sys.stderr = adapter.handles\n        ui.out = adapter.handles[0]\n        setattr(builtins, 'print', fake_print)\n\n        yield adapter\n    finally:\n        sys.stdout, sys.stderr, ui.out = oldout, olderr, olduiout\n        setattr(builtins, 'print',  oldprint)\n        adapter.cleanup()\n\n\n@contextmanager\ndef swallow_logs(new_level=None, file_=None, name='datalad'):\n    \"\"\"Context manager to consume all logs.\n\n    \"\"\"\n    lgr = logging.getLogger(name)\n\n    # Keep old settings\n    old_level = lgr.level\n    old_handlers = lgr.handlers\n\n    # Let's log everything into a string\n    # TODO: generalize with the one for swallow_outputs\n    class StringIOAdapter(object):\n        \"\"\"Little adapter to help getting out values\n\n        And to stay consistent with how swallow_outputs behaves\n        \"\"\"\n        def __init__(self):\n            if file_ is None:\n                kw = get_tempfile_kwargs({}, prefix=\"logs\")\n                out_file = tempfile.mktemp(**kw)\n            else:\n                out_file = file_\n            # PY3 requires clearly one or another.  race condition possible\n            self._out = open(out_file, 'a')\n            self._final_out = None\n\n        def _read(self, h):\n            with open(h.name) as f:\n                return f.read()\n\n        @property\n        def out(self):\n            if self._final_out is not None:\n                # we closed and cleaned up already\n                return self._final_out\n            else:\n                self._out.flush()\n                return self._read(self._out)\n\n        @property\n        def lines(self):\n            return self.out.split('\\n')\n\n        @property\n        def handle(self):\n            return self._out\n\n        def cleanup(self):\n            # store for access while object exists\n            self._final_out = self.out\n            self._out.close()\n            out_name = self._out.name\n            del self._out\n            gc.collect()\n            if not file_:\n                rmtemp(out_name)\n\n        def assert_logged(self, msg=None, level=None, regex=True, **kwargs):\n            \"\"\"Provide assertion on whether a msg was logged at a given level\n\n            If neither `msg` nor `level` provided, checks if anything was logged\n            at all.\n\n            Parameters\n            ----------\n            msg: str, optional\n              Message (as a regular expression, if `regex`) to be searched.\n              If no msg provided, checks if anything was logged at a given level.\n            level: str, optional\n              String representing the level to be logged\n            regex: bool, optional\n              If False, regular `assert_in` is used\n            **kwargs: str, optional\n              Passed to `assert_re_in` or `assert_in`\n            \"\"\"\n            from datalad.tests.utils import assert_re_in\n            from datalad.tests.utils import assert_in\n\n            if regex:\n                match = r'\\[%s\\] ' % level if level else r\"\\[\\S+\\] \"\n            else:\n                match = '[%s] ' % level if level else ''\n\n            if msg:\n                match += msg\n\n            if match:\n                (assert_re_in if regex else assert_in)(match, self.out, **kwargs)\n            else:\n                assert not kwargs, \"no kwargs to be passed anywhere\"\n                assert self.out, \"Nothing was logged!?\"\n\n    adapter = StringIOAdapter()\n    # TODO: it does store messages but without any formatting, i.e. even without\n    # date/time prefix etc.  IMHO it should preserve formatting in case if file_ is\n    # set\n    swallow_handler = logging.StreamHandler(adapter.handle)\n    # we want to log levelname so we could test against it\n    swallow_handler.setFormatter(\n        logging.Formatter('[%(levelname)s] %(message)s'))\n    # Inherit filters\n    from datalad.log import ProgressHandler\n    swallow_handler.filters = sum([h.filters for h in old_handlers\n                                   if not isinstance(h, ProgressHandler)],\n                                  [])\n    lgr.handlers = [swallow_handler]\n    if old_level < logging.DEBUG:  # so if HEAVYDEBUG etc -- show them!\n        lgr.handlers += old_handlers\n\n    if isinstance(new_level, str):\n        new_level = getattr(logging, new_level)\n\n    if new_level is not None:\n        lgr.setLevel(new_level)\n\n    try:\n        yield adapter\n        # TODO: if file_ and there was an exception -- most probably worth logging it?\n        # although ideally it should be the next log outside added to that file_ ... oh well\n    finally:\n        lgr.handlers = old_handlers\n        lgr.setLevel(old_level)\n        adapter.cleanup()\n\n\n# TODO: May be melt in with swallow_logs at some point:\n@contextmanager\ndef disable_logger(logger=None):\n    \"\"\"context manager to temporarily disable logging\n\n    This is to provide one of swallow_logs' purposes without unnecessarily\n    creating temp files (see gh-1865)\n\n    Parameters\n    ----------\n    logger: Logger\n        Logger whose handlers will be ordered to not log anything.\n        Default: datalad's topmost Logger ('datalad')\n    \"\"\"\n\n    class NullFilter(logging.Filter):\n        \"\"\"Filter class to reject all records\n        \"\"\"\n        def filter(self, record):\n            return 0\n\n    if logger is None:\n        # default: all of datalad's logging:\n        logger = logging.getLogger('datalad')\n\n    filter_ = NullFilter(logger.name)\n    [h.addFilter(filter_) for h in logger.handlers]\n\n    try:\n        yield logger\n    finally:\n        [h.removeFilter(filter_) for h in logger.handlers]\n\n\n#\n# Additional handlers\n#\n_sys_excepthook = sys.excepthook  # Just in case we ever need original one\n\n\ndef setup_exceptionhook(ipython=False):\n    \"\"\"Overloads default sys.excepthook with our exceptionhook handler.\n\n       If interactive, our exceptionhook handler will invoke\n       pdb.post_mortem; if not interactive, then invokes default handler.\n    \"\"\"\n\n    def _datalad_pdb_excepthook(type, value, tb):\n        import traceback\n        traceback.print_exception(type, value, tb)\n        print()\n        if is_interactive():\n            import pdb\n            pdb.post_mortem(tb)\n\n    if ipython:\n        from IPython.core import ultratb\n        sys.excepthook = ultratb.FormattedTB(mode='Verbose',\n                                             # color_scheme='Linux',\n                                             call_pdb=is_interactive())\n    else:\n        sys.excepthook = _datalad_pdb_excepthook\n\n\ndef ensure_dir(*args):\n    \"\"\"Make sure directory exists.\n\n    Joins the list of arguments to an os-specific path to the desired\n    directory and creates it, if it not exists yet.\n    \"\"\"\n    dirname = opj(*args)\n    if not exists(dirname):\n        os.makedirs(dirname)\n    return dirname\n\n\ndef updated(d, update):\n    \"\"\"Return a copy of the input with the 'update'\n\n    Primarily for updating dictionaries\n    \"\"\"\n    d = d.copy()\n    d.update(update)\n    return d\n\n\n_pwd_mode = None\n\n\ndef _switch_to_getcwd(msg, *args):\n    global _pwd_mode\n    _pwd_mode = 'cwd'\n    lgr.warning(\n        msg + \". From now on will be returning os.getcwd(). Directory\"\n               \" symlinks in the paths will be resolved\",\n        *args\n    )\n    # TODO:  we might want to mitigate by going through all flywheighted\n    # repos and tuning up their .paths to be resolved?\n\n\ndef getpwd():\n    \"\"\"Try to return a CWD without dereferencing possible symlinks\n\n    This function will try to use PWD environment variable to provide a current\n    working directory, possibly with some directories along the path being\n    symlinks to other directories.  Unfortunately, PWD is used/set only by the\n    shell and such functions as `os.chdir` and `os.getcwd` nohow use or modify\n    it, thus `os.getcwd()` returns path with links dereferenced.\n\n    While returning current working directory based on PWD env variable we\n    verify that the directory is the same as `os.getcwd()` after resolving all\n    symlinks.  If that verification fails, we fall back to always use\n    `os.getcwd()`.\n\n    Initial decision to either use PWD env variable or os.getcwd() is done upon\n    the first call of this function.\n    \"\"\"\n    global _pwd_mode\n    if _pwd_mode is None:\n        # we need to decide!\n        try:\n            pwd = os.environ['PWD']\n            if on_windows and pwd and pwd.startswith('/'):\n                # It should be a path from MSYS.\n                # - it might start with a drive letter or not\n                # - it seems to be \"illegal\" to have a single letter directories\n                #   under / path, i.e. if created - they aren't found\n                # - 'ln -s' does not fail to create a \"symlink\" but it just\n                # copies!\n                #   so we are not likely to need original PWD purpose on\n                # those systems\n                # Verdict:\n                _pwd_mode = 'cwd'\n            else:\n                _pwd_mode = 'PWD'\n        except KeyError:\n            _pwd_mode = 'cwd'\n\n    if _pwd_mode == 'cwd':\n        return os.getcwd()\n    elif _pwd_mode == 'PWD':\n        try:\n            cwd = os.getcwd()\n        except OSError as exc:\n            if \"o such file\" in str(exc):\n                # directory was removed but we promised to be robust and\n                # still report the path we might know since we are still in PWD\n                # mode\n                cwd = None\n            else:\n                raise\n        try:\n            pwd = os.environ['PWD']\n            pwd_real = op.realpath(pwd)\n            # This logic would fail to catch the case where chdir did happen\n            # to the directory where current PWD is pointing to, e.g.\n            # $> ls -ld $PWD\n            # lrwxrwxrwx 1 yoh yoh 5 Oct 11 13:27 /home/yoh/.tmp/tmp -> /tmp//\n            # hopa:~/.tmp/tmp\n            # $> python -c 'import os; os.chdir(\"/tmp\"); from datalad.utils import getpwd; print(getpwd(), os.getcwd())'\n            # ('/home/yoh/.tmp/tmp', '/tmp')\n            # but I guess that should not be too harmful\n            if cwd is not None and pwd_real != cwd:\n                _switch_to_getcwd(\n                    \"realpath of PWD=%s is %s whenever os.getcwd()=%s\",\n                    pwd, pwd_real, cwd\n                )\n                return cwd\n            return pwd\n        except KeyError:\n            _switch_to_getcwd(\"PWD env variable is no longer available\")\n            return cwd  # Must not happen, but may be someone\n                        # evil purges PWD from environ?\n    else:\n        raise RuntimeError(\n            \"Must have not got here. \"\n            \"pwd_mode must be either cwd or PWD. And it is now %r\" % (_pwd_mode,)\n        )\n\n\nclass chpwd(object):\n    \"\"\"Wrapper around os.chdir which also adjusts environ['PWD']\n\n    The reason is that otherwise PWD is simply inherited from the shell\n    and we have no ability to assess directory path without dereferencing\n    symlinks.\n\n    If used as a context manager it allows to temporarily change directory\n    to the given path\n    \"\"\"\n    def __init__(self, path, mkdir=False, logsuffix=''):\n\n        if path:\n            # PY35 has no auto-conversion of Path to str\n            path = str(path)\n            pwd = getpwd()\n            self._prev_pwd = pwd\n        else:\n            self._prev_pwd = None\n            return\n\n        if not isabs(path):\n            path = normpath(opj(pwd, path))\n        if not os.path.exists(path) and mkdir:\n            self._mkdir = True\n            os.mkdir(path)\n        else:\n            self._mkdir = False\n        lgr.debug(\"chdir %r -> %r %s\", self._prev_pwd, path, logsuffix)\n        os.chdir(path)  # for grep people -- ok, to chdir here!\n        os.environ['PWD'] = path\n\n    def __enter__(self):\n        # nothing more to do really, chdir was in the constructor\n        pass\n\n    def __exit__(self, exc_type, exc_val, exc_tb):\n        if self._prev_pwd:\n            # Need to use self.__class__ so this instance, if the entire\n            # thing mocked during the test, still would use correct chpwd\n            self.__class__(self._prev_pwd, logsuffix=\"(coming back)\")\n\n\ndef dlabspath(path, norm=False):\n    \"\"\"Symlinks-in-the-cwd aware abspath\n\n    os.path.abspath relies on os.getcwd() which would not know about symlinks\n    in the path\n\n    TODO: we might want to norm=True by default to match behavior of\n    os .path.abspath?\n    \"\"\"\n    if not isabs(path):\n        # if not absolute -- relative to pwd\n        path = opj(getpwd(), path)\n    return normpath(path) if norm else path\n\n\ndef with_pathsep(path):\n    \"\"\"Little helper to guarantee that path ends with /\"\"\"\n    return path + sep if not path.endswith(sep) else path\n\n\ndef get_path_prefix(path, pwd=None):\n    \"\"\"Get path prefix (for current directory)\n\n    Returns relative path to the topdir, if we are under topdir, and if not\n    absolute path to topdir.  If `pwd` is not specified - current directory\n    assumed\n    \"\"\"\n    pwd = pwd or getpwd()\n    path = dlabspath(path)\n    path_ = with_pathsep(path)\n    pwd_ = with_pathsep(pwd)\n    common = commonprefix((path_, pwd_))\n    if common.endswith(sep) and common in {path_, pwd_}:\n        # we are in subdir or above the path = use relative path\n        location_prefix = relpath(path, pwd)\n        # if benign \"here\" - cut off\n        if location_prefix in (curdir, curdir + sep):\n            location_prefix = ''\n        return location_prefix\n    else:\n        # just return absolute path\n        return path\n\n\ndef _get_normalized_paths(path, prefix):\n    if isabs(path) != isabs(prefix):\n        raise ValueError(\"Both paths must either be absolute or relative. \"\n                         \"Got %r and %r\" % (path, prefix))\n    path = with_pathsep(path)\n    prefix = with_pathsep(prefix)\n    return path, prefix\n\n\ndef path_startswith(path, prefix):\n    \"\"\"Return True if path starts with prefix path\n\n    Parameters\n    ----------\n    path: str\n    prefix: str\n    \"\"\"\n    path, prefix = _get_normalized_paths(path, prefix)\n    return path.startswith(prefix)\n\n\ndef path_is_subpath(path, prefix):\n    \"\"\"Return True if path is a subpath of prefix\n\n    It will return False if path == prefix.\n\n    Parameters\n    ----------\n    path: str\n    prefix: str\n    \"\"\"\n    path, prefix = _get_normalized_paths(path, prefix)\n    return (len(prefix) < len(path)) and path.startswith(prefix)\n\n\ndef knows_annex(path):\n    \"\"\"Returns whether at a given path there is information about an annex\n\n    It is just a thin wrapper around GitRepo.is_with_annex() classmethod\n    which also checks for `path` to exist first.\n\n    This includes actually present annexes, but also uninitialized ones, or\n    even the presence of a remote annex branch.\n    \"\"\"\n    from os.path import exists\n    if not exists(path):\n        lgr.debug(\"No annex: test path {0} doesn't exist\".format(path))\n        return False\n    from datalad.support.gitrepo import GitRepo\n    return GitRepo(path, init=False, create=False).is_with_annex()\n\n\n@contextmanager\ndef make_tempfile(content=None, wrapped=None, **tkwargs):\n    \"\"\"Helper class to provide a temporary file name and remove it at the end (context manager)\n\n    Parameters\n    ----------\n    mkdir : bool, optional (default: False)\n        If True, temporary directory created using tempfile.mkdtemp()\n    content : str or bytes, optional\n        Content to be stored in the file created\n    wrapped : function, optional\n        If set, function name used to prefix temporary file name\n    `**tkwargs`:\n        All other arguments are passed into the call to tempfile.mk{,d}temp(),\n        and resultant temporary filename is passed as the first argument into\n        the function t.  If no 'prefix' argument is provided, it will be\n        constructed using module and function names ('.' replaced with\n        '_').\n\n    To change the used directory without providing keyword argument 'dir' set\n    DATALAD_TESTS_TEMP_DIR.\n\n    Examples\n    --------\n        >>> from os.path import exists\n        >>> from datalad.utils import make_tempfile\n        >>> with make_tempfile() as fname:\n        ...    k = open(fname, 'w').write('silly test')\n        >>> assert not exists(fname)  # was removed\n\n        >>> with make_tempfile(content=\"blah\") as fname:\n        ...    assert open(fname).read() == \"blah\"\n    \"\"\"\n\n    if tkwargs.get('mkdir', None) and content is not None:\n        raise ValueError(\"mkdir=True while providing content makes no sense\")\n\n    tkwargs_ = get_tempfile_kwargs(tkwargs, wrapped=wrapped)\n\n    # if DATALAD_TESTS_TEMP_DIR is set, use that as directory,\n    # let mktemp handle it otherwise. However, an explicitly provided\n    # dir=... will override this.\n    mkdir = tkwargs_.pop('mkdir', False)\n\n    filename = {False: tempfile.mktemp,\n                True: tempfile.mkdtemp}[mkdir](**tkwargs_)\n    filename = realpath(filename)\n\n    if content:\n        with open(filename, 'w' + ('b' if isinstance(content, bytes) else '')) as f:\n            f.write(content)\n\n    if __debug__:\n        # TODO mkdir\n        lgr.debug('Created temporary thing named %s\"' % filename)\n    try:\n        yield filename\n    finally:\n        # glob here for all files with the same name (-suffix)\n        # would be useful whenever we requested .img filename,\n        # and function creates .hdr as well\n        lsuffix = len(tkwargs_.get('suffix', ''))\n        filename_ = lsuffix and filename[:-lsuffix] or filename\n        filenames = glob.glob(filename_ + '*')\n        if len(filename_) < 3 or len(filenames) > 5:\n            # For paranoid yoh who stepped into this already ones ;-)\n            lgr.warning(\"It is unlikely that it was intended to remove all\"\n                        \" files matching %r. Skipping\" % filename_)\n            return\n        for f in filenames:\n            try:\n                rmtemp(f)\n            except OSError:  # pragma: no cover\n                pass\n\n\ndef _path_(*p):\n    \"\"\"Given a path in POSIX\" notation, regenerate one in native to the env one\"\"\"\n    if on_windows:\n        return opj(*map(lambda x: opj(*x.split('/')), p))\n    else:\n        # Assume that all others as POSIX compliant so nothing to be done\n        return opj(*p)\n\n\ndef get_timestamp_suffix(time_=None, prefix='-'):\n    \"\"\"Return a time stamp (full date and time up to second)\n\n    primarily to be used for generation of log files names\n    \"\"\"\n    args = []\n    if time_ is not None:\n        if isinstance(time_, int):\n            time_ = time.gmtime(time_)\n        args.append(time_)\n    return time.strftime(prefix + TIMESTAMP_FMT, *args)\n\n\ndef get_logfilename(dspath, cmd='datalad'):\n    \"\"\"Return a filename to use for logging under a dataset/repository\n\n    directory would be created if doesn't exist, but dspath must exist\n    and be a directory\n    \"\"\"\n    assert(exists(dspath))\n    assert(isdir(dspath))\n    ds_logdir = ensure_dir(dspath, '.git', 'datalad', 'logs')  # TODO: use WEB_META_LOG whenever #789 merged\n    return opj(ds_logdir, 'crawl-%s.log' % get_timestamp_suffix())\n\n\ndef get_trace(edges, start, end, trace=None):\n    \"\"\"Return the trace/path to reach a node in a tree.\n\n    Parameters\n    ----------\n    edges : sequence(2-tuple)\n      The tree given by a sequence of edges (parent, child) tuples. The\n      nodes can be identified by any value and data type that supports\n      the '==' operation.\n    start :\n      Identifier of the start node. Must be present as a value in the parent\n      location of an edge tuple in order to be found.\n    end :\n      Identifier of the target/end node. Must be present as a value in the child\n      location of an edge tuple in order to be found.\n    trace : list\n      Mostly useful for recursive calls, and used internally.\n\n    Returns\n    -------\n    None or list\n      Returns a list with the trace to the target (the starts and the target\n      are not included in the trace, hence if start and end are directly connected\n      an empty list is returned), or None when no trace to the target can be found,\n      or start and end are identical.\n    \"\"\"\n    # the term trace is used to avoid confusion with a path in the sense\n    # of a filesystem path, but the analogy fits and nodes can be paths\n    if trace is None:\n        trace = []\n    if not edges:\n        raise ValueError(\"no edges given\")\n    for cand in edges:\n        cand_super, cand_sub = cand\n        if cand_sub in trace:\n            # only DAGs, skip any cyclic traces\n            continue\n        if trace and cand_super != trace[-1]:\n            # only consider edges that lead off the end of the trace\n            continue\n        if not trace and cand_super != start:\n            # we got nothing yet, and this edges is not matching the start\n            continue\n        if cand_sub == end:\n            return trace\n        # dive into potential subnodes\n        cand_trace = get_trace(\n            edges,\n            start,\n            end,\n            trace + [cand_sub])\n        if cand_trace:\n            return cand_trace\n    return None\n\n\ndef get_dataset_root(path):\n    \"\"\"Return the root of an existent dataset containing a given path\n\n    The root path is returned in the same absolute or relative form\n    as the input argument. If no associated dataset exists, or the\n    input path doesn't exist, None is returned.\n\n    If `path` is a symlink or something other than a directory, its\n    the root dataset containing its parent directory will be reported.\n    If none can be found, at a symlink at `path` is pointing to a\n    dataset, `path` itself will be reported as the root.\n    \"\"\"\n    suffix = '.git'\n    altered = None\n    if op.islink(path) or not op.isdir(path):\n        altered = path\n        path = op.dirname(path)\n    apath = op.abspath(path)\n    # while we can still go up\n    while op.split(apath)[1]:\n        if op.exists(op.join(path, suffix)):\n            return path\n        # new test path in the format we got it\n        path = op.normpath(op.join(path, os.pardir))\n        # no luck, next round\n        apath = op.abspath(path)\n    # if we applied dirname() at the top, we give it another go with\n    # the actual path, if it was itself a symlink, it could be the\n    # top-level dataset itself\n    if altered and op.exists(op.join(altered, suffix)):\n        return altered\n\n    return None\n\n\n# ATM used in datalad_crawler extension, so do not remove yet\ndef try_multiple(ntrials, exception, base, f, *args, **kwargs):\n    \"\"\"Call f multiple times making exponentially growing delay between the calls\"\"\"\n    from .dochelpers import exc_str\n    for trial in range(1, ntrials+1):\n        try:\n            return f(*args, **kwargs)\n        except exception as exc:\n            if trial == ntrials:\n                raise  # just reraise on the last trial\n            t = base ** trial\n            lgr.warning(\"Caught %s on trial #%d. Sleeping %f and retrying\",\n                        exc_str(exc), trial, t)\n            sleep(t)\n\n\n@optional_args\ndef try_multiple_dec(f, ntrials=None, duration=0.1, exceptions=None, increment_type=None):\n    \"\"\"Decorator to try function multiple times.\n\n    Main purpose is to decorate functions dealing with removal of files/directories\n    and which might need a few seconds to work correctly on Windows which takes\n    its time to release files/directories.\n\n    Parameters\n    ----------\n    ntrials: int, optional\n    duration: float, optional\n      Seconds to sleep before retrying.\n    increment_type: {None, 'exponential'}\n      Note that if it is exponential, duration should typically be > 1.0\n      so it grows with higher power\n\n    \"\"\"\n    from .dochelpers import exc_str\n    if not exceptions:\n        exceptions = (OSError, WindowsError, PermissionError) \\\n            if on_windows else OSError\n    if not ntrials:\n        # Life goes fast on proper systems, no need to delay it much\n        ntrials = 50 if on_windows else 3\n\n    assert increment_type in {None, 'exponential'}\n\n    @wraps(f)\n    def wrapped(*args, **kwargs):\n        t = duration\n        for trial in range(ntrials):\n            try:\n                return f(*args, **kwargs)\n            except exceptions as exc:\n                if increment_type == 'exponential':\n                    t = duration ** (trial + 1)\n                lgr.log(\n                    5,\n                    \"Caught %s on trial #%d. Sleeping %f and retrying\",\n                    exc_str(exc), trial, t)\n                if trial < ntrials - 1:\n                    sleep(t)\n                else:\n                    raise\n\n    return wrapped\n\n\n@try_multiple_dec\ndef unlink(f):\n    \"\"\"'Robust' unlink.  Would try multiple times\n\n    On windows boxes there is evidence for a latency of more than a second\n    until a file is considered no longer \"in-use\".\n    WindowsError is not known on Linux, and if IOError or any other\n    exception\n    is thrown then if except statement has WindowsError in it -- NameError\n    also see gh-2533\n    \"\"\"\n    # Check for open files\n    assert_no_open_files(f)\n    return os.unlink(f)\n\n\n@try_multiple_dec\ndef _rmtree(*args, **kwargs):\n    \"\"\"Just a helper to decorate shutil.rmtree.\n\n    rmtree defined above does more and ideally should not itself be decorated\n    since a recursive definition and does checks for open files inside etc -\n    might be too runtime expensive\n    \"\"\"\n    return shutil.rmtree(*args, **kwargs)\n\n\ndef slash_join(base, extension):\n    \"\"\"Join two strings with a '/', avoiding duplicate slashes\n\n    If any of the strings is None the other is returned as is.\n    \"\"\"\n    if extension is None:\n        return base\n    if base is None:\n        return extension\n    return '/'.join(\n        (base.rstrip('/'),\n         extension.lstrip('/')))\n\n\ndef safe_print(s):\n    \"\"\"Print with protection against UTF-8 encoding errors\"\"\"\n    # A little bit of dance to be able to test this code\n    print_f = getattr(builtins, \"print\")\n    try:\n        print_f(s)\n    except UnicodeEncodeError:\n        # failed to encode so let's do encoding while ignoring errors\n        # to print at least something\n        # explicit `or ascii` since somehow on buildbot it seemed to return None\n        s = s.encode(getattr(sys.stdout, 'encoding', 'ascii') or 'ascii', errors='ignore') \\\n            if hasattr(s, 'encode') else s\n        print_f(s.decode())\n\n#\n# IO Helpers\n#\n\ndef open_r_encdetect(fname, readahead=1000):\n    \"\"\"Return a file object in read mode with auto-detected encoding\n\n    This is helpful when dealing with files of unknown encoding.\n\n    Parameters\n    ----------\n    readahead: int, optional\n      How many bytes to read for guessing the encoding type.  If\n      negative - full file will be read\n    \"\"\"\n    from chardet import detect\n    import io\n    # read some bytes from the file\n    with open(fname, 'rb') as f:\n        head = f.read(readahead)\n    enc = detect(head)\n    denc = enc.get('encoding', None)\n    lgr.debug(\"Auto-detected encoding %s for file %s (confidence: %s)\",\n              denc,\n              fname,\n              enc.get('confidence', 'unknown'))\n    return io.open(fname, encoding=denc)\n\n\ndef read_csv_lines(fname, dialect=None, readahead=16384, **kwargs):\n    \"\"\"A generator of dict records from a CSV/TSV\n\n    Automatically guesses the encoding for each record to convert to UTF-8\n\n    Parameters\n    ----------\n    fname: str\n      Filename\n    dialect: str, optional\n      Dialect to specify to csv.reader. If not specified -- guessed from\n      the file, if fails to guess, \"excel-tab\" is assumed\n    readahead: int, optional\n      How many bytes to read from the file to guess the type\n    **kwargs\n      Passed to `csv.reader`\n    \"\"\"\n    import csv\n    if dialect is None:\n        with open(fname) as tsvfile:\n            # add robustness, use a sniffer\n            try:\n                dialect = csv.Sniffer().sniff(tsvfile.read(readahead))\n            except Exception as exc:\n                from .dochelpers import exc_str\n                lgr.warning(\n                    'Could not determine file-format, assuming TSV: %s',\n                    exc_str(exc)\n                )\n                dialect = 'excel-tab'\n\n    kw = dict(encoding='utf-8')\n    with open(fname, 'r', **kw) as tsvfile:\n        # csv.py doesn't do Unicode; encode temporarily as UTF-8:\n        csv_reader = csv.reader(\n            tsvfile,\n            dialect=dialect,\n            **kwargs\n        )\n        header = None\n        for row in csv_reader:\n            # decode UTF-8 back to Unicode, cell by cell:\n            row_unicode = map(ensure_unicode, row)\n            if header is None:\n                header = list(row_unicode)\n            else:\n                yield dict(zip(header, row_unicode))\n\n\ndef import_modules(modnames, pkg, msg=\"Failed to import {module}\", log=lgr.debug):\n    \"\"\"Helper to import a list of modules without failing if N/A\n\n    Parameters\n    ----------\n    modnames: list of str\n      List of module names to import\n    pkg: str\n      Package under which to import\n    msg: str, optional\n      Message template for .format() to log at DEBUG level if import fails.\n      Keys {module} and {package} will be provided and ': {exception}' appended\n    log: callable, optional\n      Logger call to use for logging messages\n    \"\"\"\n    from importlib import import_module\n    _globals = globals()\n    mods_loaded = []\n    if pkg and not pkg in sys.modules:\n        # with python 3.5.1 (ok with 3.5.5) somehow kept running into\n        #  Failed to import dlsub1: Parent module 'dltestm1' not loaded\n        # while running the test. Preloading pkg resolved the issue\n        import_module(pkg)\n    for modname in modnames:\n        try:\n            _globals[modname] = mod = import_module(\n                '.{}'.format(modname),\n                pkg)\n            mods_loaded.append(mod)\n        except Exception as exc:\n            from datalad.dochelpers import exc_str\n            log((msg + ': {exception}').format(\n                module=modname, package=pkg, exception=exc_str(exc)))\n    return mods_loaded\n\n\ndef import_module_from_file(modpath, pkg=None, log=lgr.debug):\n    \"\"\"Import provided module given a path\n\n    TODO:\n    - RF/make use of it in pipeline.py which has similar logic\n    - join with import_modules above?\n\n    Parameters\n    ----------\n    pkg: module, optional\n       If provided, and modpath is under pkg.__path__, relative import will be\n       used\n    \"\"\"\n    assert(modpath.endswith('.py'))  # for now just for .py files\n\n    log(\"Importing %s\" % modpath)\n\n    modname = basename(modpath)[:-3]\n    relmodpath = None\n    if pkg:\n        for pkgpath in pkg.__path__:\n            if path_is_subpath(modpath, pkgpath):\n                # for now relying on having .py extension -- assertion above\n                relmodpath = '.' + relpath(modpath[:-3], pkgpath).replace(sep, '.')\n                break\n\n    try:\n        if relmodpath:\n            from importlib import import_module\n            mod = import_module(relmodpath, pkg.__name__)\n        else:\n            dirname_ = dirname(modpath)\n            try:\n                sys.path.insert(0, dirname_)\n                mod = __import__(modname, level=0)\n            finally:\n                if dirname_ in sys.path:\n                    sys.path.pop(sys.path.index(dirname_))\n                else:\n                    log(\"Expected path %s to be within sys.path, but it was gone!\" % dirname_)\n    except Exception as e:\n        from datalad.dochelpers import exc_str\n        raise RuntimeError(\n            \"Failed to import module from %s: %s\" % (modpath, exc_str(e)))\n\n    return mod\n\n\ndef get_encoding_info():\n    \"\"\"Return a dictionary with various encoding/locale information\"\"\"\n    import sys, locale\n    from collections import OrderedDict\n    return OrderedDict([\n        ('default', sys.getdefaultencoding()),\n        ('filesystem', sys.getfilesystemencoding()),\n        ('locale.prefered', locale.getpreferredencoding()),\n    ])\n\n\ndef get_envvars_info():\n    from collections import OrderedDict\n    envs = []\n    for var, val in os.environ.items():\n        if (\n                var.startswith('PYTHON') or\n                var.startswith('LC_') or\n                var.startswith('GIT_') or\n                var in ('LANG', 'LANGUAGE', 'PATH')\n        ):\n            envs.append((var, val))\n    return OrderedDict(envs)\n\n\n# This class is modified from Snakemake (v5.1.4)\nclass SequenceFormatter(string.Formatter):\n    \"\"\"string.Formatter subclass with special behavior for sequences.\n\n    This class delegates formatting of individual elements to another\n    formatter object. Non-list objects are formatted by calling the\n    delegate formatter's \"format_field\" method. List-like objects\n    (list, tuple, set, frozenset) are formatted by formatting each\n    element of the list according to the specified format spec using\n    the delegate formatter and then joining the resulting strings with\n    a separator (space by default).\n    \"\"\"\n\n    def __init__(self, separator=\" \", element_formatter=string.Formatter(),\n                 *args, **kwargs):\n        self.separator = separator\n        self.element_formatter = element_formatter\n\n    def format_element(self, elem, format_spec):\n        \"\"\"Format a single element\n\n        For sequences, this is called once for each element in a\n        sequence. For anything else, it is called on the entire\n        object. It is intended to be overridden in subclases.\n        \"\"\"\n        return self.element_formatter.format_field(elem, format_spec)\n\n    def format_field(self, value, format_spec):\n        if isinstance(value, (list, tuple, set, frozenset)):\n            return self.separator.join(self.format_element(v, format_spec)\n                                       for v in value)\n        else:\n            return self.format_element(value, format_spec)\n\n\n# TODO: eventually we might want to make use of attr module\nclass File(object):\n    \"\"\"Helper for a file entry in the create_tree/@with_tree\n\n    It allows to define additional settings for entries\n    \"\"\"\n    def __init__(self, name, executable=False):\n        \"\"\"\n\n        Parameters\n        ----------\n        name : str\n          Name of the file\n        executable: bool, optional\n          Make it executable\n        \"\"\"\n        self.name = name\n        self.executable = executable\n\n    def __str__(self):\n        return self.name\n\n\ndef create_tree_archive(path, name, load, overwrite=False, archives_leading_dir=True):\n    \"\"\"Given an archive `name`, create under `path` with specified `load` tree\n    \"\"\"\n    from datalad.support.archives import compress_files\n    dirname = file_basename(name)\n    full_dirname = op.join(path, dirname)\n    os.makedirs(full_dirname)\n    create_tree(full_dirname, load, archives_leading_dir=archives_leading_dir)\n    # create archive\n    if archives_leading_dir:\n        compress_files([dirname], name, path=path, overwrite=overwrite)\n    else:\n        compress_files(list(map(op.basename, glob.glob(opj(full_dirname, '*')))),\n                       opj(op.pardir, name),\n                       path=op.join(path, dirname),\n                       overwrite=overwrite)\n    # remove original tree\n    rmtree(full_dirname)\n\n\ndef create_tree(path, tree, archives_leading_dir=True, remove_existing=False):\n    \"\"\"Given a list of tuples (name, load) create such a tree\n\n    if load is a tuple itself -- that would create either a subtree or an archive\n    with that content and place it into the tree if name ends with .tar.gz\n    \"\"\"\n    lgr.log(5, \"Creating a tree under %s\", path)\n    if not op.exists(path):\n        os.makedirs(path)\n\n    if isinstance(tree, dict):\n        tree = tree.items()\n\n    for file_, load in tree:\n        if isinstance(file_, File):\n            executable = file_.executable\n            name = file_.name\n        else:\n            executable = False\n            name = file_\n        full_name = op.join(path, name)\n        if remove_existing and op.lexists(full_name):\n            rmtree(full_name, chmod_files=True)\n        if isinstance(load, (tuple, list, dict)):\n            if name.endswith('.tar.gz') or name.endswith('.tar') or name.endswith('.zip'):\n                create_tree_archive(\n                    path, name, load,\n                    archives_leading_dir=archives_leading_dir)\n            else:\n                create_tree(\n                    full_name, load,\n                    archives_leading_dir=archives_leading_dir,\n                    remove_existing=remove_existing)\n        else:\n            open_func = open\n            if full_name.endswith('.gz'):\n                open_func = gzip.open\n            with open_func(full_name, \"wb\") as f:\n                f.write(ensure_bytes(load, 'utf-8'))\n        if executable:\n            os.chmod(full_name, os.stat(full_name).st_mode | stat.S_IEXEC)\n\n\ndef get_suggestions_msg(values, known, sep=\"\\n        \"):\n    \"\"\"Return a formatted string with suggestions for values given the known ones\n    \"\"\"\n    import difflib\n    suggestions = []\n    for value in ensure_list(values):  # might not want to do it if we change presentation below\n        suggestions += difflib.get_close_matches(value, known)\n    suggestions = unique(suggestions)\n    msg = \"Did you mean any of these?\"\n    if suggestions:\n        if '\\n' in sep:\n            # if separator includes new line - we add entire separator right away\n            msg += sep\n        else:\n            msg += ' '\n        return msg + \"%s\\n\" % sep.join(suggestions)\n    return ''\n\n\ndef bytes2human(n, format='%(value).1f %(symbol)sB'):\n    \"\"\"\n    Convert n bytes into a human readable string based on format.\n    symbols can be either \"customary\", \"customary_ext\", \"iec\" or \"iec_ext\",\n    see: http://goo.gl/kTQMs\n\n      >>> from datalad.utils import bytes2human\n      >>> bytes2human(1)\n      '1.0 B'\n      >>> bytes2human(1024)\n      '1.0 KB'\n      >>> bytes2human(1048576)\n      '1.0 MB'\n      >>> bytes2human(1099511627776127398123789121)\n      '909.5 YB'\n\n      >>> bytes2human(10000, \"%(value).1f %(symbol)s/sec\")\n      '9.8 K/sec'\n\n      >>> # precision can be adjusted by playing with %f operator\n      >>> bytes2human(10000, format=\"%(value).5f %(symbol)s\")\n      '9.76562 K'\n\n    Taken from: http://goo.gl/kTQMs and subsequently simplified\n    Original Author: Giampaolo Rodola' <g.rodola [AT] gmail [DOT] com>\n    License: MIT\n    \"\"\"\n    n = int(n)\n    if n < 0:\n        raise ValueError(\"n < 0\")\n    symbols = ('', 'K', 'M', 'G', 'T', 'P', 'E', 'Z', 'Y')\n    prefix = {}\n    for i, s in enumerate(symbols[1:]):\n        prefix[s] = 1 << (i + 1) * 10\n    for symbol in reversed(symbols[1:]):\n        if n >= prefix[symbol]:\n            value = float(n) / prefix[symbol]\n            return format % locals()\n    return format % dict(symbol=symbols[0], value=n)\n\n\ndef quote_cmdlinearg(arg):\n    \"\"\"Perform platform-appropriate argument quoting\"\"\"\n    # https://stackoverflow.com/a/15262019\n    return '\"{}\"'.format(\n        arg.replace('\"', '\"\"')\n    ) if on_windows else shlex_quote(arg)\n\n\ndef split_cmdline(s):\n    \"\"\"Perform platform-appropriate command line splitting.\n\n    Identical to `shlex.split()` on non-windows platforms.\n\n    Modified from https://stackoverflow.com/a/35900070\n    \"\"\"\n    if not on_windows:\n        return shlex_split(s)\n\n    # the rest is for windows\n    RE_CMD_LEX = r'''\"((?:\"\"|\\\\[\"\\\\]|[^\"])*)\"?()|(\\\\\\\\(?=\\\\*\")|\\\\\")|(&&?|\\|\\|?|\\d?>|[<])|([^\\s\"&|<>]+)|(\\s+)|(.)'''\n\n    args = []\n    accu = None   # collects pieces of one arg\n    for qs, qss, esc, pipe, word, white, fail in re.findall(RE_CMD_LEX, s):\n        if word:\n            pass   # most frequent\n        elif esc:\n            word = esc[1]\n        elif white or pipe:\n            if accu is not None:\n                args.append(accu)\n            if pipe:\n                args.append(pipe)\n            accu = None\n            continue\n        elif fail:\n            raise ValueError(\"invalid or incomplete shell string\")\n        elif qs:\n            word = qs.replace('\\\\\"', '\"').replace('\\\\\\\\', '\\\\')\n            if platform == 0:\n                word = word.replace('\"\"', '\"')\n        else:\n            word = qss   # may be even empty; must be last\n\n        accu = (accu or '') + word\n\n    if accu is not None:\n        args.append(accu)\n\n    return args\n\n\ndef get_wrapped_class(wrapped):\n    \"\"\"Determine the command class a wrapped __call__ belongs to\"\"\"\n    mod = sys.modules[wrapped.__module__]\n    command_class_name = wrapped.__qualname__.split('.')[-2]\n    _func_class = mod.__dict__[command_class_name]\n    lgr.debug(\"Determined class of decorated function: %s\", _func_class)\n    return _func_class\n\n\n# TODO whenever we feel ready for English kill the compat block below\nassure_tuple_or_list = ensure_tuple_or_list\nassure_iter = ensure_iter\nassure_list = ensure_list\nassure_list_from_str = ensure_list_from_str\nassure_dict_from_str = ensure_dict_from_str\nassure_bytes = ensure_bytes\nassure_unicode = ensure_unicode\nassure_bool = ensure_bool\nassure_dir = ensure_dir\n\n\nlgr.log(5, \"Done importing datalad.utils\")\n",
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                            },
                            {
                                "content": "            value_repr = repr(value)",
                                "type": "context"
                            },
                            {
                                "content": "            if not value_repr.startswith('<') and len(value_repr) > l:",
                                "type": "context"
                            },
                            {
                                "content": "                value_repr = \"<<%s...>>\" % (value_repr[:l - 8])",
                                "type": "deleted"
                            },
                            {
                                "content": "                value_repr = \"<<%s++%d chars++%s>>\" % (",
                                "type": "added"
                            },
                            {
                                "content": "                    value_repr[:l - 16],",
                                "type": "added"
                            },
                            {
                                "content": "                    len(value_repr) - (l - 16 + 4),",
                                "type": "added"
                            },
                            {
                                "content": "                    value_repr[-4:]",
                                "type": "added"
                            },
                            {
                                "content": "                )",
                                "type": "added"
                            },
                            {
                                "content": "            elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':",
                                "type": "context"
                            },
                            {
                                "content": "                raise ValueError(\"I hate those useless long reprs\")",
                                "type": "context"
                            },
                            {
                                "content": "        else:",
                                "type": "context"
                            },
                            {
                                "content": "",
                                "type": "context"
                            }
                        ]
                    },
                    "modified_entities": [
                        {
                            "file_name": "datalad/utils.py",
                            "type": "function",
                            "name": "shortened_repr",
                            "content": "def shortened_repr(value, l=30):\n    try:\n        if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):\n            value_repr = repr(value)\n            if not value_repr.startswith('<') and len(value_repr) > l:\n                value_repr = \"<<%s...>>\" % (value_repr[:l - 8])\n            elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':\n                raise ValueError(\"I hate those useless long reprs\")\n        else:\n            raise ValueError(\"gimme class\")\n    except Exception as e:\n        value_repr = \"<%s>\" % value.__class__.__name__.split('.')[-1]\n    return value_repr",
                            "ast_type_str": "FunctionDef",
                            "start_lineno": 189,
                            "end_lineno": 201,
                            "parent": null
                        }
                    ],
                    "added_entities": [],
                    "deleted_entities": []
                }
            ]
        }
    ],
    "old_commit_hash": "a579fd373c58c2bcc9b68c36cb90c2042bc83a10^",
    "new_commit_hash": "a579fd373c58c2bcc9b68c36cb90c2042bc83a10",
    "commit_message": "RF(ENH): in shortened_repr inform how many characters are not shown\n\nalso changes the format from just adding ... at the end to using ++??? chars++ in\nthe middle, thus showing the trailer of original repr -- useful if it is a list\nor a tuple, so you could see the end of the structure annotation",
    "commit_date": "2020-03-27T19:28:45-04:00",
    "metadata": {}
}
{
    "repo_name": "datalad",
    "new_commit_hash": "a579fd373c58c2bcc9b68c36cb90c2042bc83a10",
    "test_file_codes": [
        "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# -*- coding: utf-8 -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\"\"\"Test testing utilities\n\n\"\"\"\n\nimport os, os.path as op\nimport shutil\nimport sys\nimport logging\nfrom unittest.mock import patch\nimport builtins\n\nfrom operator import itemgetter\nfrom os.path import dirname, normpath, pardir, basename\nfrom os.path import isabs, expandvars, expanduser\nfrom collections import OrderedDict\n\nfrom datalad.utils import updated\nfrom os.path import join as opj, abspath, exists\nfrom datalad.utils import (\n    rotree, swallow_outputs, swallow_logs, setup_exceptionhook, md5sum\n)\nfrom datalad.utils import getpwd, chpwd\nfrom datalad.utils import get_path_prefix\nfrom datalad.utils import auto_repr\nfrom datalad.utils import find_files\nfrom datalad.utils import is_interactive\nfrom datalad.utils import line_profile\nfrom datalad.utils import not_supported_on_windows\nfrom datalad.utils import file_basename\nfrom datalad.utils import expandpath, is_explicit_path\nfrom datalad.utils import assure_unicode\nfrom datalad.utils import knows_annex\nfrom datalad.utils import any_re_search\nfrom datalad.utils import unique\nfrom datalad.utils import all_same\nfrom datalad.utils import partition\nfrom datalad.utils import get_func_kwargs_doc\nfrom datalad.utils import make_tempfile\nfrom datalad.utils import on_windows\nfrom datalad.utils import _path_\nfrom datalad.utils import get_timestamp_suffix\nfrom datalad.utils import get_trace\nfrom datalad.utils import get_dataset_root\nfrom datalad.utils import better_wraps\nfrom datalad.utils import path_startswith\nfrom datalad.utils import path_is_subpath\nfrom datalad.utils import dlabspath\nfrom datalad.utils import safe_print\nfrom datalad.utils import generate_chunks\nfrom datalad.utils import disable_logger\nfrom datalad.utils import import_modules, import_module_from_file\nfrom datalad.utils import get_open_files\nfrom datalad.utils import map_items\nfrom datalad.utils import unlink\nfrom datalad.utils import CMD_MAX_ARG\nfrom datalad.utils import create_tree\nfrom datalad.utils import never_fail\nfrom datalad.utils import Path\n\nfrom datalad.support.annexrepo import AnnexRepo\n\nfrom nose.tools import (\n    assert_equal,\n    assert_false,\n    assert_greater,\n    assert_true,\n    eq_,\n    ok_,\n)\nfrom datalad.tests.utils import nok_, assert_re_in\n\nfrom datalad.tests.utils import with_tempfile, assert_in, with_tree\nfrom datalad.tests.utils import SkipTest\nfrom datalad.tests.utils import assert_cwd_unchanged, skip_if_on_windows\nfrom datalad.tests.utils import assure_dict_from_str, assure_list_from_str\nfrom datalad.tests.utils import assure_unicode\nfrom datalad.tests.utils import as_unicode\nfrom datalad.tests.utils import assure_bool\nfrom datalad.tests.utils import assure_iter\nfrom datalad.tests.utils import assure_list\nfrom datalad.tests.utils import ok_generator\nfrom datalad.tests.utils import assert_not_in\nfrom datalad.tests.utils import assert_raises\nfrom datalad.tests.utils import ok_startswith\nfrom datalad.tests.utils import skip_if_no_module\nfrom datalad.tests.utils import (\n    probe_known_failure, skip_known_failure, known_failure, known_failure_v6,\n    skip_if,\n    ok_file_has_content,\n    known_failure_windows,\n    has_symlink_capability,\n)\nfrom datalad.tests.utils import OBSCURE_FILENAME\n\n\ndef test_get_func_kwargs_doc():\n    def some_func(arg1, kwarg1=None, kwarg2=\"bu\"):\n        return\n    eq_(get_func_kwargs_doc(some_func), ['arg1', 'kwarg1', 'kwarg2'])\n\n\ndef test_better_wraps():\n    from functools import wraps\n    from datalad.utils import getargspec\n\n    def wraps_decorator(func):\n        @wraps(func)\n        def new_func(*args, **kwargs):\n            return func(*args, **kwargs)\n\n        return new_func\n\n    def better_decorator(func):\n        @better_wraps(func)\n        def new_func(*args, **kwargs):\n            return func(*args, **kwargs)\n\n        return new_func\n\n    @wraps_decorator\n    def function1(a, b, c):\n        return \"function1\"\n\n    @better_decorator\n    def function2(a, b, c):\n        return \"function2\"\n\n    eq_(\"function1\", function1(1, 2, 3))\n    eq_(getargspec(function1)[0], [])\n    eq_(\"function2\", function2(1, 2, 3))\n    eq_(getargspec(function2)[0], ['a', 'b', 'c'])\n\n\n@with_tempfile(mkdir=True)\ndef test_rotree(d):\n    d2 = opj(d, 'd1', 'd2')  # deep nested directory\n    f = opj(d2, 'f1')\n    os.makedirs(d2)\n    with open(f, 'w') as f_:\n        f_.write(\"LOAD\")\n    with swallow_logs():\n        ar = AnnexRepo(d2)\n    rotree(d)\n    # we shouldn't be able to delete anything UNLESS in \"crippled\" situation:\n    # root, or filesystem is FAT etc\n    # Theoretically annex should declare FS as crippled when ran as root, but\n    # see http://git-annex.branchable.com/bugs/decides_that_FS_is_crippled_\n    # under_cowbuilder___40__symlinks_supported_etc__41__/#comment-60c3cbe2710d6865fb9b7d6e247cd7aa\n    # so explicit 'or'\n    if not (ar.is_crippled_fs() or (os.getuid() == 0)):\n        assert_raises(OSError, os.unlink, f)          # OK to use os.unlink\n        assert_raises(OSError, unlink, f)   # and even with waiting and trying!\n        assert_raises(OSError, shutil.rmtree, d)\n        # but file should still be accessible\n        with open(f) as f_:\n            eq_(f_.read(), \"LOAD\")\n    # make it RW\n    rotree(d, False)\n    unlink(f)\n    shutil.rmtree(d)\n\n\ndef test_swallow_outputs():\n    with swallow_outputs() as cm:\n        eq_(cm.out, '')\n        sys.stdout.write(\"out normal\")\n        sys.stderr.write(\"out error\")\n        eq_(cm.out, 'out normal')\n        sys.stdout.write(\" and more\")\n        eq_(cm.out, 'out normal and more')  # incremental\n        eq_(cm.err, 'out error')\n        eq_(cm.err, 'out error')  # the same value if multiple times\n\n\n@with_tempfile\ndef test_swallow_logs(logfile):\n    lgr = logging.getLogger('datalad')\n    with swallow_logs(new_level=9) as cm:\n        eq_(cm.out, '')\n        lgr.log(8, \"very heavy debug\")\n        eq_(cm.out, '')  # not even visible at level 9\n        lgr.log(9, \"debug1\")\n        eq_(cm.out, '[Level 9] debug1\\n')  # not even visible at level 9\n        lgr.info(\"info\")\n        # not even visible at level 9\n        eq_(cm.out, '[Level 9] debug1\\n[INFO] info\\n')\n    with swallow_logs(new_level=9, file_=logfile) as cm:\n        eq_(cm.out, '')\n        lgr.info(\"next info\")\n    from datalad.tests.utils import ok_file_has_content\n    ok_file_has_content(logfile, \"[INFO] next info\", strip=True)\n\n\ndef test_swallow_logs_assert():\n    lgr = logging.getLogger('datalad.tests')\n    with swallow_logs(new_level=9) as cm:\n        # nothing was logged so should fail\n        assert_raises(AssertionError, cm.assert_logged)\n        lgr.info(\"something\")\n        cm.assert_logged(\"something\")\n        cm.assert_logged(level=\"INFO\")\n        cm.assert_logged(\"something\", level=\"INFO\")\n\n        # even with regex = False should match above\n        cm.assert_logged(\"something\", regex=False)\n        cm.assert_logged(level=\"INFO\", regex=False)\n        cm.assert_logged(\"something\", level=\"INFO\", regex=False)\n\n        # different level\n        assert_raises(AssertionError,\n                      cm.assert_logged, \"something\", level=\"DEBUG\")\n        assert_raises(AssertionError, cm.assert_logged, \"else\")\n\n        cm.assert_logged(\"some.hing\", level=\"INFO\")  # regex ;-)\n        # does match\n        assert_raises(AssertionError,\n                      cm.assert_logged, \"ome.hing\", level=\"INFO\")\n        # but we can change it\n        cm.assert_logged(\"some.hing\", level=\"INFO\", match=False)\n    # and we can continue doing checks after we left the cm block\n    cm.assert_logged(\"some.hing\", level=\"INFO\", match=False)\n    # and we indeed logged something\n    cm.assert_logged(match=False)\n\n\ndef test_disable_logger():\n\n    # get a logger hierarchy:\n    lgr_top = logging.getLogger('datalad')\n    lgr_middle = logging.getLogger('datalad.tests')\n    lgr_bottom = logging.getLogger('datalad.tests.utils')\n\n    with swallow_logs(new_level=logging.DEBUG) as cml:\n        with disable_logger():  # default: 'datalad':\n            lgr_top.debug(\"log sth at top level\")\n            lgr_middle.debug(\"log sth at mid level\")\n            lgr_bottom.debug(\"log sth at bottom level\")\n        # nothing logged:\n        assert_raises(AssertionError, cml.assert_logged)\n\n    # again, but pass in the logger at mid level:\n    with swallow_logs(new_level=logging.DEBUG) as cml:\n        with disable_logger(lgr_middle):\n            lgr_top.debug(\"log sth at top level\")\n            lgr_middle.debug(\"log sth at mid level\")\n            lgr_bottom.debug(\"log sth at bottom level\")\n        # top level unaffected:\n        cml.assert_logged(\"log sth at top level\", level=\"DEBUG\", regex=False)\n        # but both of the lower ones don't log anything:\n        assert_raises(AssertionError, cml.assert_logged, \"log sth at mid level\")\n        assert_raises(AssertionError, cml.assert_logged, \"log sth at bottom level\")\n\n\ndef _check_setup_exceptionhook(interactive):\n    old_exceptionhook = sys.excepthook\n\n    post_mortem_tb = []\n\n    def our_post_mortem(tb):\n        post_mortem_tb.append(tb)\n\n    with patch('sys.excepthook'), \\\n            patch('datalad.utils.is_interactive', lambda: interactive), \\\n            patch('pdb.post_mortem', our_post_mortem):\n        setup_exceptionhook()\n        our_exceptionhook = sys.excepthook\n        ok_(old_exceptionhook != our_exceptionhook)\n        with swallow_logs() as cml, swallow_outputs() as cmo:\n            # we need to call our_exceptionhook explicitly b/c nose\n            # swallows all Exceptions and hook never gets executed\n            try:\n                raise RuntimeError\n            except Exception as e:  # RuntimeError:\n                type_, value_, tb_ = sys.exc_info()\n            our_exceptionhook(type_, value_, tb_)\n            # Happens under tox environment but not in manually crafted\n            # ones -- not yet sure what it is about but --dbg does work\n            # with python3 so lettting it skip for now\n            raise SkipTest(\n                \"TODO: Not clear why in PY3 calls cleanup if we try to \"\n                \"access the beast\"\n            )\n            assert_in('Traceback (most recent call last)', cmo.err)\n            assert_in('in _check_setup_exceptionhook', cmo.err)\n            if interactive:\n                assert_equal(post_mortem_tb[0], tb_)\n            else:\n                assert_equal(post_mortem_tb, [])\n                # assert_in('We cannot setup exception hook', cml.out)\n\n    eq_(old_exceptionhook, sys.excepthook)\n\n\ndef test_setup_exceptionhook():\n    for tval in [True, False]:\n        yield _check_setup_exceptionhook, tval\n\n\ndef test_md5sum():\n    # just a smoke (encoding/decoding) test for md5sum\n    _ = md5sum(__file__)\n\n\n@with_tree([('1.tar.gz', (('1 f.txt', '1 f load'),))])\ndef test_md5sum_archive(d):\n    # just a smoke (encoding/decoding) test for md5sum\n    _ = md5sum(opj(d, '1.tar.gz'))\n\n\ndef test_updated():\n    d = {}\n    eq_(updated(d, {1: 2}), {1: 2})\n    eq_(d, {})\n\n    d = {'a': 'b'}\n    eq_(updated(d, ((0, 1), (2, 3))), {0: 1, 'a': 'b', 2: 3})\n    eq_(d, {'a': 'b'})\n\n    # and that it would maintain the type\n    d = OrderedDict(((99, 0), ('z', 0), ('a', 0)))\n    d_ = updated(d, {0: 1})\n    ok_(isinstance(d_, OrderedDict))\n    eq_(d_, OrderedDict(((99, 0), ('z', 0), ('a', 0), (0, 1))))\n\n\ndef test_get_local_file_url_windows():\n    raise SkipTest(\"TODO\")\n\n\n@assert_cwd_unchanged\ndef test_getpwd_basic():\n    pwd = getpwd()\n    ok_(isabs(pwd))\n    eq_(os.getcwd(), abspath(pwd))\n\n    # that we do not chdir anywhere if None provided\n    with patch('os.chdir') as oschdir:\n        with chpwd(None):\n            eq_(getpwd(), pwd)\n        assert_false(oschdir.called)\n\n\n@assert_cwd_unchanged(ok_to_chdir=True)\n@with_tempfile(mkdir=True)\ndef test_getpwd_change_mode(tdir):\n    from datalad import utils\n    if utils._pwd_mode != 'PWD':\n        raise SkipTest(\"Makes sense to be tested only in PWD mode, \"\n                       \"but we seems to be beyond that already\")\n    # The evil plain chdir call\n    os.chdir(tdir)\n    # Just testing the logic of switching to cwd mode and issuing a warning\n    with swallow_logs(new_level=logging.WARNING) as cml:\n        pwd = getpwd()\n        eq_(pwd, os.path.realpath(pwd))  # might have symlinks, thus realpath\n    assert_in(\"symlinks in the paths will be resolved\", cml.out)\n    eq_(utils._pwd_mode, 'cwd')\n\n\n@skip_if_on_windows\n@with_tempfile(mkdir=True)\n@assert_cwd_unchanged\ndef test_getpwd_symlink(tdir):\n    sdir = opj(tdir, 's1')\n    pwd_orig = getpwd()\n    os.symlink('.', sdir)\n    s1dir = opj(sdir, 's1')\n    s2dir = opj(sdir, 's2')\n    try:\n        chpwd(sdir)\n        pwd = getpwd()\n        eq_(pwd, sdir)\n        chpwd('s1')\n        eq_(getpwd(), s1dir)\n        chpwd('.')\n        eq_(getpwd(), s1dir)\n        chpwd('..')\n        eq_(getpwd(), sdir)\n    finally:\n        chpwd(pwd_orig)\n\n    # test context handler way of use\n    with chpwd(s1dir):\n        eq_(getpwd(), s1dir)\n    eq_(getpwd(), pwd_orig)\n\n    assert_false(exists(s2dir))\n    with assert_raises(OSError):\n        with chpwd(s2dir):\n            pass\n    with chpwd(s2dir, mkdir=True):\n        ok_(exists(s2dir))\n        eq_(getpwd(), s2dir)\n\n\n@with_tempfile(mkdir=True)\ndef test_chpwd_obscure_name(topdir):\n    path = op.join(topdir, OBSCURE_FILENAME)\n    os.mkdir(path)\n    # Just check that call doesn't fail.\n    with chpwd(path):\n        pass\n\n\ndef test_auto_repr():\n\n    class WithoutReprClass:\n        def __init__(self):\n            self.a = \"does not matter\"\n\n    @auto_repr\n    class buga:\n        def __init__(self):\n            self.a = 1\n            self.b = list(range(100))\n            self.c = WithoutReprClass()\n            self._c = \"protect me\"\n\n        def some(self):\n            return \"some\"\n\n    assert_equal(\n        repr(buga()),\n        \"buga(a=1, b=<<[0, 1, 2, 3, 4++372 chars++ 99]>>, c=<WithoutReprClass>)\"\n    )\n    assert_equal(buga().some(), \"some\")\n\n\ndef test_assure_iter():\n    s = {1}\n    assert assure_iter(None, set) == set()\n    assert assure_iter(1, set) == s\n    assert assure_iter(1, list) == [1]\n    assert assure_iter(s, set) is s\n    assert assure_iter(s, set, copy=True) is not s\n\n\ndef test_assure_list_copy():\n    l = [1]\n    assert assure_list(l) is l\n    assert assure_list(l, copy=True) is not l\n\n\ndef test_assure_list_from_str():\n    assert_equal(assure_list_from_str(''), None)\n    assert_equal(assure_list_from_str([]), None)\n    assert_equal(assure_list_from_str('somestring'), ['somestring'])\n    assert_equal(assure_list_from_str('some\\nmultiline\\nstring'), ['some', 'multiline', 'string'])\n    assert_equal(assure_list_from_str(['something']), ['something'])\n    assert_equal(assure_list_from_str(['a', 'listof', 'stuff']), ['a', 'listof', 'stuff'])\n\n\ndef test_assure_dict_from_str():\n    assert_equal(assure_dict_from_str(''), None)\n    assert_equal(assure_dict_from_str({}), None)\n    target_dict = dict(\n        __ac_name='{user}', __ac_password='{password}',\n        cookies_enabled='', submit='Log in'\n    )\n    string = '__ac_name={user}\\n__ac_password={password}\\nsubmit=Log ' \\\n               'in\\ncookies_enabled='\n    assert_equal(assure_dict_from_str(string), target_dict)\n    assert_equal(assure_dict_from_str(\n        target_dict),\n        target_dict)\n\n\ndef test_assure_bool():\n    for values, t in [\n        (['True', 1, '1', 'yes', 'on'], True),\n        (['False', 0, '0', 'no', 'off'], False)\n    ]:\n        for v in values:\n            eq_(assure_bool(v), t)\n    assert_raises(ValueError, assure_bool, \"unknown\")\n\n\ndef test_generate_chunks():\n    ok_generator(generate_chunks([1], 1))\n    eq_(list(generate_chunks([1], 1)), [[1]])\n    eq_(list(generate_chunks([1], 2)), [[1]])\n    eq_(list(generate_chunks([1, 2, 3], 2)), [[1, 2], [3]])\n    # type is preserved\n    eq_(list(generate_chunks((1, 2, 3), 2)), [(1, 2), (3,)])\n    # no hangers\n    eq_(list(generate_chunks((1, 2, 3, 4), 2)), [(1, 2), (3, 4)])\n    assert_raises(AssertionError, list, generate_chunks([1], 0))\n\n\ndef test_any_re_search():\n    assert_true(any_re_search('a', 'a'))\n    assert_true(any_re_search('a', 'bab'))\n    assert_false(any_re_search('^a', 'bab'))\n    assert_true(any_re_search(['b', '.ab'], 'bab'))\n    assert_false(any_re_search(['^b', 'bab'], 'ab'))\n\n\ndef test_find_files():\n    tests_dir = dirname(__file__)\n    proj_dir = normpath(opj(dirname(__file__), pardir))\n\n    ff = find_files('.*', proj_dir)\n    ok_generator(ff)\n    files = list(ff)\n    assert(len(files) > 10)  # we have more than 10 test files here\n    assert_in(opj(tests_dir, 'test_utils.py'), files)\n    # and no directories should be mentioned\n    assert_not_in(tests_dir, files)\n\n    ff2 = find_files('.*', proj_dir, dirs=True)\n    files2 = list(ff2)\n    assert_in(opj(tests_dir, 'test_utils.py'), files2)\n    assert_in(tests_dir, files2)\n\n    # now actually matching the path\n    ff3 = find_files(\n        r'.*\\\\test_.*\\.py$' if on_windows else r'.*/test_.*\\.py$',\n        proj_dir, dirs=True)\n    files3 = list(ff3)\n    assert_in(opj(tests_dir, 'test_utils.py'), files3)\n    assert_not_in(tests_dir, files3)\n    for f in files3:\n        ok_startswith(basename(f), 'test_')\n\n\n@with_tree(tree={\n    '.git': {\n        '1': '2'\n    },\n    'd1': {\n        '.git': 'possibly a link from submodule'\n    },\n    'git': 'just a file'\n})\ndef test_find_files_exclude_vcs(repo):\n    ff = find_files('.*', repo, dirs=True)\n    files = list(ff)\n    assert_equal({basename(f) for f in files}, {'d1', 'git'})\n    assert_not_in(opj(repo, '.git'), files)\n\n    ff = find_files('.*', repo, dirs=True, exclude_vcs=False)\n    files = list(ff)\n    assert_equal({basename(f) for f in files}, {'d1', 'git', '.git', '1'})\n    assert_in(opj(repo, '.git'), files)\n\n\ndef test_not_supported_on_windows():\n    with patch('datalad.utils.on_windows', True):\n        assert_raises(NotImplementedError, not_supported_on_windows)\n        assert_raises(NotImplementedError, not_supported_on_windows, \"msg\")\n\n    with patch('datalad.utils.on_windows', False):\n        assert_equal(not_supported_on_windows(), None)\n        assert_equal(not_supported_on_windows(\"msg\"), None)\n\n\ndef test_file_basename():\n    eq_(file_basename('1'), '1')\n    eq_(file_basename('d1/1'), '1')\n    eq_(file_basename('/d1/1'), '1')\n    eq_(file_basename('1.'), '1.')\n    eq_(file_basename('1.tar.gz'), '1')\n    eq_(file_basename('1.Tar.gz'), '1')\n    eq_(file_basename('1._bak.gz'), '1')\n    eq_(file_basename('1.tar.gz', return_ext=True), ('1', 'tar.gz'))\n    eq_(file_basename('/tmp/1.tar.gz'), '1')\n    eq_(file_basename('/tmp/1.longish.gz'), '1.longish')\n    eq_(file_basename('1_R1.1.1.tar.gz'), '1_R1.1.1')\n    eq_(file_basename('ds202_R1.1.1.tgz'), 'ds202_R1.1.1')\n\n\ndef test_expandpath():\n    eq_(expandpath(\"some\", False), expanduser('some'))\n    eq_(expandpath(\"some\", False), expandvars('some'))\n    assert_true(isabs(expandpath('some')))\n    # this may have to go because of platform issues\n    eq_(expandpath(\"$HOME\"), expanduser('~'))\n\n\ndef test_is_explicit_path():\n    # by default expanded paths are absolute, hence explicit\n    assert_true(is_explicit_path(expandpath('~')))\n    assert_false(is_explicit_path(\"here\"))\n\n\n@with_tempfile\n@with_tempfile\ndef test_knows_annex(here, there):\n    from datalad.support.gitrepo import GitRepo\n    from datalad.support.annexrepo import AnnexRepo\n    GitRepo(path=here, create=True)\n    assert_false(knows_annex(here))\n    AnnexRepo(path=here, create=True)\n    assert_true(knows_annex(here))\n    GitRepo.clone(path=there, url=here, create=True)\n    assert_true(knows_annex(there))\n\n\ndef test_make_tempfile():\n    # check if mkdir, content conflict caught\n    with assert_raises(ValueError):\n        with make_tempfile(content=\"blah\", mkdir=True):  # pragma: no cover\n            pass\n\n\ndef test_unique():\n    eq_(unique(range(3)), [0, 1, 2])\n    eq_(unique(range(3), reverse=True), [0, 1, 2])\n    eq_(unique((1, 0, 1, 3, 2, 0, 1)), [1, 0, 3, 2])\n    eq_(unique((1, 0, 1, 3, 2, 0, 1), reverse=True), [3, 2, 0, 1])\n    eq_(unique([]), [])\n    eq_(unique([], reverse=True), [])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)]), [(1, 2), (1,), (0, 3)])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)], reverse=True),\n        [(1,), (1, 2), (0, 3)])\n\n    # with a key now\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)],\n               key=itemgetter(0)), [(1, 2), (0, 3)])\n    eq_(unique([(1, 2), (1,), (1, 2), (0, 3)],\n               key=itemgetter(0), reverse=True), [(1, 2), (0, 3)])\n\n    eq_(unique([(1, 2), (1, 3), (1, 2), (0, 3)],\n               key=itemgetter(1)), [(1, 2), (1, 3)])\n    eq_(unique([(1, 2), (1, 3), (1, 2), (0, 3)],\n               key=itemgetter(1), reverse=True), [(1, 2), (0, 3)])\n\n\ndef test_all_same():\n    ok_(all_same([0, 0, 0]))\n    ok_(not all_same([0, 0, '0']))\n    ok_(not all_same([]))\n\n    def never_get_to_not_needed():\n        yield 'a'\n        yield 'a'\n        yield 'b'\n        raise ValueError(\"Should not get here since on b should return\")\n\n    ok_(not all_same(never_get_to_not_needed()))\n\n    def gen1(n):\n        for x in range(n):\n            yield 'a'\n    ok_(not all_same(gen1(0)))\n    ok_(all_same(gen1(1)))\n    ok_(all_same(gen1(2)))\n    ok_(all_same(gen1(10)))\n\n\ndef test_partition():\n    def fn(*args, **kwargs):\n        left, right = partition(*args, **kwargs)\n        return list(left), list(right)\n\n    eq_(fn([False, True, False]),\n        ([False, False], [True]))\n\n    eq_(fn([1, 5, 4, 10], lambda x: x > 4),\n        ([1, 4], [5, 10]))\n\n    eq_(fn([1, 5, 4, 10], lambda x: x < 0),\n        ([1, 5, 4, 10], []))\n\n\ndef test_path_():\n    eq_(_path_('a'), 'a')\n    if on_windows:\n        eq_(_path_('a/b'), r'a\\b')\n    else:\n        p = 'a/b/c'\n        assert(_path_(p) is p)  # nothing is done to it whatsoever\n        eq_(_path_(p, 'd'), 'a/b/c/d')\n\n\n@known_failure_windows\ndef test_get_timestamp_suffix():\n    # we need to patch temporarily TZ\n    import time\n    try:\n        with patch.dict('os.environ', {'TZ': 'GMT'}):\n            time.tzset()\n            # skynet DOB\n            assert_equal(get_timestamp_suffix(0), '-1970-01-01T00:00:00+0000')\n            assert_equal(get_timestamp_suffix(0, prefix=\"+\"),\n                         '+1970-01-01T00:00:00+0000')\n            # yoh found no way to mock things out and didn't want to provide\n            # explicit call to anything to get current time with the timezone,\n            # so disabling this test for now besides that it should return smth\n            # sensible ;)\n            #with patch.object(time, 'localtime', lambda: 1):\n            #    assert_equal(get_timestamp_suffix(),\n            #  '-1970-01-01T00:00:01+0000')  # skynet is 1 sec old\n            assert(get_timestamp_suffix().startswith('-'))\n    finally:\n        time.tzset()\n\n\ndef test_memoized_generator():\n    called = [0]\n\n    def g1(n):\n        \"\"\"a generator\"\"\"\n        called[0] += 1\n        for i in range(n):\n            yield i\n\n    from datalad.utils import saved_generator\n    ok_generator(g1(3))\n    g1_, g2_ = saved_generator(g1(3))\n    ok_generator(g1_)\n    ok_generator(g2_)\n    target = list(g1(3))\n    eq_(called[0], 1)\n    eq_(target, list(g1_))\n    eq_(called[0], 2)\n    eq_(target, list(g2_))\n    eq_(called[0], 2)  # no new call to make a generator\n    # but we can't (ab)use 2nd time\n    eq_([], list(g2_))\n\n\ndef test_assure_unicode():\n    ok_(isinstance(assure_unicode(\"m\"), str))\n    ok_(isinstance(assure_unicode('grandchild_äöü東'), str))\n    ok_(isinstance(assure_unicode(u'grandchild_äöü東'), str))\n    eq_(assure_unicode('grandchild_äöü東'), u'grandchild_äöü東')\n    # now, non-utf8\n    # Decoding could be deduced with high confidence when the string is\n    # really encoded in that codepage\n    mom_koi8r = u\"мама\".encode('koi8-r')\n    eq_(assure_unicode(mom_koi8r), u\"мама\")\n    eq_(assure_unicode(mom_koi8r, confidence=0.9), u\"мама\")\n    mom_iso8859 = u'mamá'.encode('iso-8859-1')\n    eq_(assure_unicode(mom_iso8859), u'mamá')\n    eq_(assure_unicode(mom_iso8859, confidence=0.5), u'mamá')\n    # but when we mix, it does still guess something allowing to decode:\n    mixedin = mom_koi8r + u'東'.encode('iso2022_jp') + u'東'.encode('utf-8')\n    ok_(isinstance(assure_unicode(mixedin), str))\n    # but should fail if we request high confidence result:\n    with assert_raises(ValueError):\n        assure_unicode(mixedin, confidence=0.9)\n    # For other, non string values, actually just returns original value\n    # TODO: RF to actually \"assure\" or fail??  For now hardcoding that assumption\n    assert assure_unicode(1) is 1\n\n\ndef test_pathlib_unicode():\n    eq_(str(Path(\"a\")), u\"a\")\n    eq_(str(Path(u\"β\")), u\"β\")\n\n\ndef test_as_unicode():\n    eq_(as_unicode('grandchild_äöü東'), u'grandchild_äöü東')\n    eq_(as_unicode(None), u\"\")\n    eq_(as_unicode(1), u\"1\")\n    # NOTE: u? is because result is different between PY2 (prefixes unicode repr\n    # while in PY3 is no longer needed!  So aggregation result would differ between\n    # PY2 and PY3\n    # Didn't manage to make it work in PY2\n    #TODO assert_re_in(u'\\[1, .s., u?.東.\\]', as_unicode([1, \"s\", u\"東\"]))\n    eq_(as_unicode(\"01\"), u\"01\")  # no some kind of conversion/stripping of numerals\n    with assert_raises(TypeError) as cme:\n        as_unicode(1, list)\n    assert_in(\"1 is not of any of known or provided\", str(cme.exception))\n\n\n@known_failure_windows\n@with_tempfile(mkdir=True)\ndef test_path_prefix(path):\n    eq_(get_path_prefix('/d1/d2', '/d1/d2'), '')\n    # so we are under /d1/d2 so path prefix is ..\n    eq_(get_path_prefix('/d1/d2', '/d1/d2/d3'), '..')\n    eq_(get_path_prefix('/d1/d2/d3', '/d1/d2'), 'd3')\n    # but if outside -- full path\n    eq_(get_path_prefix('/d1/d2', '/d1/d20/d3'), '/d1/d2')\n    with chpwd(path):\n        eq_(get_path_prefix('.'), '')\n        eq_(get_path_prefix('d1'), 'd1')\n        eq_(get_path_prefix('d1', 'd2'), opj(path, 'd1'))\n        eq_(get_path_prefix('..'), '..')\n\n\ndef test_get_trace():\n    assert_raises(ValueError, get_trace, [], 'boom', 'does_not_matter')\n    eq_(get_trace([('A', 'B')], 'A', 'A'), None)\n    eq_(get_trace([('A', 'B')], 'A', 'B'), [])\n    eq_(get_trace([('A', 'B')], 'A', 'C'), None)\n    eq_(get_trace([('A', 'B'),\n                   ('B', 'C')], 'A', 'C'), ['B'])\n    # order of edges doesn't matter\n    eq_(get_trace([\n        ('B', 'C'),\n        ('A', 'B')\n        ], 'A', 'C'), ['B'])\n    # mixed rubbish\n    eq_(get_trace([\n        (1, 3),\n        ('B', 'C'),\n        (None, ('schwak', 7)),\n        ('A', 'B'),\n        ], 'A', 'C'), ['B'])\n    # long\n    eq_(get_trace([\n        ('B', 'C'),\n        ('A', 'B'),\n        ('distract', 'me'),\n        ('C', 'D'),\n        ('D', 'E'),\n        ], 'A', 'E'), ['B', 'C', 'D'])\n\n\n@with_tempfile(mkdir=True)\ndef test_get_dataset_root(path):\n    eq_(get_dataset_root('/nonexistent'), None)\n    with chpwd(path):\n        repo = AnnexRepo(os.curdir, create=True)\n        subdir = opj('some', 'deep')\n        fname = opj(subdir, 'dummy')\n        os.makedirs(subdir)\n        with open(fname, 'w') as f:\n            f.write('some')\n        repo.add(fname)\n        # we can find this repo\n        eq_(get_dataset_root(os.curdir), os.curdir)\n        # and we get the type of path that we fed in\n        eq_(get_dataset_root(abspath(os.curdir)), abspath(os.curdir))\n        # subdirs are no issue\n        eq_(get_dataset_root(subdir), os.curdir)\n        # even more subdirs are no issue\n        eq_(get_dataset_root(opj(subdir, subdir)), os.curdir)\n        # non-dir paths are no issue\n        eq_(get_dataset_root(fname), os.curdir)\n\n\n@known_failure_windows\ndef test_path_startswith():\n    ok_(path_startswith('/a/b', '/a'))\n    ok_(path_startswith('/a/b', '/a/b'))\n    ok_(path_startswith('/a/b', '/a/b/'))\n    ok_(path_startswith('/a/b/', '/a/b'))\n    ok_(path_startswith('/a/b', '/'))\n    ok_(path_startswith('/aaa/b/c', '/aaa'))\n    nok_(path_startswith('/aaa/b/c', '/aa'))\n    nok_(path_startswith('/a/b', '/a/c'))\n    nok_(path_startswith('/a/b/c', '/a/c'))\n    # must not mix relative and abs\n    assert_raises(ValueError, path_startswith, 'a/b', '/a')\n    assert_raises(ValueError, path_startswith, '/a/b', 'a')\n\n\n@known_failure_windows\ndef test_path_is_subpath():\n    ok_(path_is_subpath('/a/b', '/a'))\n    ok_(path_is_subpath('/a/b/c', '/a'))\n    nok_(path_is_subpath('/a/b', '/a/b'))\n    nok_(path_is_subpath('/a/b', '/a/b/'))\n    nok_(path_is_subpath('/a/b/', '/a/b'))\n    ok_(path_is_subpath('/a/b', '/'))\n    ok_(path_is_subpath('/aaa/b/c', '/aaa'))\n    nok_(path_is_subpath('/aaa/b/c', '/aa'))\n    nok_(path_is_subpath('/a/b', '/a/c'))\n    nok_(path_is_subpath('/a/b/c', '/a/c'))\n    # must not mix relative and abs\n    assert_raises(ValueError, path_is_subpath, 'a/b', '/a')\n    assert_raises(ValueError, path_is_subpath, '/a/b', 'a')\n\n\ndef test_safe_print():\n    \"\"\"Just to test that we are getting two attempts to print\"\"\"\n\n    called = [0]\n\n    def _print(s):\n        assert_equal(s, \"bua\")\n        called[0] += 1\n        if called[0] == 1:\n            raise UnicodeEncodeError('crap', u\"\", 0, 1, 'whatever')\n\n    with patch.object(builtins, 'print', _print):\n        safe_print(\"bua\")\n    assert_equal(called[0], 2)\n\n\ndef test_probe_known_failure():\n\n    # Note: we can't test the switch \"datalad.tests.knownfailures.probe\"\n    # directly, since it was evaluated in the decorator already. So we need\n    # to have different assertions in this test based on config and have it\n    # tested across builds, which use different settings for that switch.\n\n    @probe_known_failure\n    def not_failing():\n        pass\n\n    @probe_known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n    switch = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if switch:\n        # if probing is enabled the failing is considered to be expected and\n        # therefore the decorated function doesn't actually fail:\n        failing()\n        # in opposition a function that doesn't fail raises an AssertionError:\n        assert_raises(AssertionError, not_failing)\n    else:\n        # if probing is disabled it should just fail/pass as is:\n        assert_raises(AssertionError, failing)\n        not_failing()\n\n\ndef test_skip_if():\n\n    def dummy():\n        raise AssertionError\n\n    assert_raises(AssertionError, dummy)\n    # if cond is False, call the decorated function:\n    assert_raises(AssertionError, skip_if(cond=False, method='raise')(dummy))\n    # raises SkipTest if cond is True\n    assert_raises(SkipTest, skip_if(cond=True, method='raise')(dummy))\n    # but with method 'pass', there is neither SkipTest nor AssertionError.\n    # Instead the function call is just skipped:\n    skip_if(cond=True, method='pass')(dummy)\n    # But if condition is False, the original function is still called:\n    assert_raises(AssertionError, skip_if(cond=False, method='pass')(dummy))\n\n\ndef test_skip_known_failure():\n\n    # Note: we can't test the switch \"datalad.tests.knownfailures.skip\"\n    # directly, since it was evaluated in the decorator already. So we need\n    # to have different assertions in this test based on config and have it\n    # tested across builds, which use different settings for that switch.\n\n    @skip_known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n    switch = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n\n    if switch:\n        # if skipping is enabled, we shouldn't see the exception:\n        failing()\n    else:\n        # if it's disabled, failing() is executed and therefore exception\n        # is raised:\n        assert_raises(AssertionError, failing)\n\n\ndef test_known_failure():\n\n    @known_failure\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n\n    skip = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n    probe = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if skip:\n        # skipping takes precedence over probing\n        failing()\n    elif probe:\n        # if we probe a known failure it's okay to fail:\n        failing()\n    else:\n        # not skipping and not probing results in the original failure:\n        assert_raises(AssertionError, failing)\n\n\ndef test_known_failure_v6():\n\n    @known_failure_v6\n    def failing():\n        raise AssertionError(\"Failed\")\n\n    from datalad import cfg\n\n    v6 = cfg.obtain(\"datalad.repo.version\") == 6\n    skip = cfg.obtain(\"datalad.tests.knownfailures.skip\")\n    probe = cfg.obtain(\"datalad.tests.knownfailures.probe\")\n\n    if v6:\n        if skip:\n            # skipping takes precedence over probing\n            failing()\n        elif probe:\n            # if we probe a known failure it's okay to fail:\n            failing()\n        else:\n            # not skipping and not probing results in the original failure:\n            assert_raises(AssertionError, failing)\n\n    else:\n        # behaves as if it wasn't decorated at all, no matter what\n        assert_raises(AssertionError, failing)\n\n\nfrom datalad.utils import read_csv_lines\n\n\ndef test_known_failure_direct_mode():\n    # Decorator is deprecated now and that is what we check\n    from datalad.tests.utils import known_failure_direct_mode\n\n    x = []\n    with swallow_logs(new_level=logging.WARNING) as cml:\n        @known_failure_direct_mode\n        def failing():\n            x.append('ok')\n            raise AssertionError(\"Failed\")\n\n        assert_raises(AssertionError, failing)  # nothing is swallowed\n        eq_(x, ['ok'])  # everything runs\n        assert_in(\"Direct mode support is deprecated\", cml.out)\n\n\n@with_tempfile(content=\"h1 h2\\nv1 2\\nv2 3\")\ndef test_read_csv_lines_basic(infile):\n    # Just a basic test, next one with unicode\n    gen = read_csv_lines(infile)\n    ok_generator(gen)\n    eq_(\n        list(gen),\n        [\n            {u'h1': u'v1', u'h2': u'2'},\n            {u'h1': u'v2', u'h2': u'3'},\n        ]\n    )\n\n\n@with_tempfile(content=u\"h1\\th2\\nv1\\tдата\".encode('utf-8'))\ndef test_read_csv_lines_tsv_unicode(infile):\n    # Just a basic test, next one with unicode\n    gen = read_csv_lines(infile)\n    ok_generator(gen)\n    eq_(\n        list(gen),\n        [\n            {u'h1': u'v1', u'h2': u'дата'},\n        ]\n    )\n\n\n@with_tempfile(content=u\"h1\\nv1\\nv2\")\ndef test_read_csv_lines_one_column(infile):\n    # Just a basic test, next one with unicode\n    eq_(\n        list(read_csv_lines(infile)),\n        [\n            {u'h1': u'v1'},\n            {u'h1': u'v2'},\n        ]\n    )\n\n\ndef _get_testm_tree(ind):\n    \"\"\"Generate a fake package with submodules\n\n    We need to increment index for different tests since otherwise e.g.\n    import_modules fails to import submodule if first import_module_from_file\n    imports that one\n    \"\"\"\n    return {\n        'dltestm%d' % ind: {\n            '__init__.py': '',\n            'dlsub1': {'__init__.py': 'var = 1'},\n            'dlsub2.py': 'var = 2'}\n    }\n\n@with_tree(tree=_get_testm_tree(1))\ndef test_import_modules(topdir):\n    try:\n        sys.path.append(topdir)\n        mods = import_modules(['dlsub1', 'bogus'], 'dltestm1')\n    finally:\n        sys.path.pop(sys.path.index(topdir))\n    eq_(len(mods), 1)\n    eq_(mods[0].__name__, 'dltestm1.dlsub1')\n\n\n@with_tree(tree=_get_testm_tree(2))\ndef test_import_module_from_file(topdir):\n    with assert_raises(AssertionError):\n        # we support only submodule files ending with .py ATM. TODO\n        import_module_from_file(op.join(topdir, 'dltestm2', 'dlsub1'))\n\n    dlsub2_path = op.join(topdir, 'dltestm2', 'dlsub2.py')\n    mod = import_module_from_file(dlsub2_path)\n    eq_(mod.__name__, 'dlsub2')  # we are not asking to import as submod of the dltestm1\n    assert_in('dlsub2', sys.modules)\n\n    try:\n        sys.path.append(topdir)\n        import dltestm2\n        mod = import_module_from_file(dlsub2_path, pkg=dltestm2)\n        eq_(mod.__name__, 'dltestm2.dlsub2')\n        assert_in('dltestm2.dlsub2', sys.modules)\n    finally:\n        sys.path.pop(sys.path.index(topdir))\n\n\ndef test_import_modules_fail():\n    # test that we log failures correctly\n    failures = []\n    import_modules(['bogus'], 'datalad', 'Fail {package}.{module}', failures.append)\n    eq_(len(failures), 1)\n    ok_startswith(failures[0], \"Fail datalad.bogus: No module\")\n\n\n# Should be the last one since as discovered in NICEMAN might screw up coverage\ndef test_line_profile():\n    skip_if_no_module('line_profiler')\n\n    @line_profile\n    def f(j):\n        i = j + 1  # xyz\n        return i\n\n    with swallow_outputs() as cmo:\n        assert_equal(f(3), 4)\n        assert_equal(cmo.err, '')\n        assert_in('i = j + 1  # xyz', cmo.out)\n\n\n@with_tempfile(mkdir=True)\ndef test_dlabspath(path):\n    if not has_symlink_capability():\n        raise SkipTest\n    # initially ran into on OSX https://github.com/datalad/datalad/issues/2406\n    opath = opj(path, \"origin\")\n    os.makedirs(opath)\n    lpath = opj(path, \"linked\")\n    os.symlink('origin', lpath)\n    for d in opath, lpath:\n        # regardless under which directory, all results should not resolve\n        # anything\n        eq_(d, dlabspath(d))\n        # in the root of ds\n        with chpwd(d):\n            eq_(dlabspath(\"bu\"), opj(d, \"bu\"))\n            eq_(dlabspath(\"./bu\"), opj(d, \"./bu\"))  # we do not normpath by default\n            eq_(dlabspath(\"./bu\", norm=True), opj(d, \"bu\"))\n\n\n@with_tree({'1': 'content', 'd': {'2': 'more'}})\ndef test_get_open_files(p):\n    skip_if_no_module('psutil')\n    eq_(get_open_files(p), {})\n    f1 = opj(p, '1')\n    subd = opj(p, 'd')\n    with open(f1) as f:\n        # since lsof does not care about PWD env var etc, paths\n        # will not contain symlinks, we better realpath them\n        # all before comparison\n        eq_(get_open_files(p, log_open=40)[op.realpath(f1)].pid,\n            os.getpid())\n\n    assert not get_open_files(subd)\n    # if we start a process within that directory, should get informed\n    from subprocess import Popen, PIPE\n    from time import time\n    t0 = time()\n    proc = Popen([sys.executable, '-c',\n                  r'import sys; sys.stdout.write(\"OK\\n\"); sys.stdout.flush();'\n                  r'import time; time.sleep(10)'],\n                 stdout=PIPE,\n                 cwd=subd)\n    # Assure that it started and we read the OK\n    eq_(assure_unicode(proc.stdout.readline().strip()), u\"OK\")\n    assert time() - t0 < 5 # that we were not stuck waiting for process to finish\n    eq_(get_open_files(p)[op.realpath(subd)].pid, proc.pid)\n    eq_(get_open_files(subd)[op.realpath(subd)].pid, proc.pid)\n    proc.terminate()\n    assert not get_open_files(subd)\n\n\ndef test_map_items():\n    def add10(x):\n        return x + 10\n    eq_(map_items(add10, {2: 3}), {12: 13})\n\n    class Custom(object):\n        \"\"\"For testing with custom items possibly of varying length etc\"\"\"\n        def __init__(self, items):\n            self._items = list(items)\n\n        def items(self):\n            return self._items\n\n    c = Custom([(1,), (2, 3), (4, 5, 6)])\n    c_mapped = map_items(add10, c)\n    assert type(c) is type(c_mapped)\n    eq_(c_mapped.items(), [(11,), (12, 13), (14, 15, 16)])\n\n\ndef test_CMD_MAX_ARG():\n    # 100 is arbitrarily large small integer ;)\n    # if fails -- we are unlikely to be able to work on this system\n    # and something went really wrong!\n    assert_greater(CMD_MAX_ARG, 100)\n\n\n@with_tempfile(mkdir=True)\ndef test_create_tree(path):\n    content = u\"мама мыла раму\"\n    create_tree(path, OrderedDict([\n        ('1', content),\n        ('sd', OrderedDict(\n            [\n            # right away an obscure case where we have both 1 and 1.gz\n                ('1', content*2),\n                ('1.gz', content*3),\n            ]\n        )),\n    ]))\n    ok_file_has_content(op.join(path, '1'), content)\n    ok_file_has_content(op.join(path, 'sd', '1'), content*2)\n    ok_file_has_content(op.join(path, 'sd', '1.gz'), content*3, decompress=True)\n\n\ndef test_never_fail():\n\n    @never_fail\n    def iamok(arg):\n        return arg\n    eq_(iamok(1), 1)\n\n    @never_fail\n    def ifail(arg):\n        raise ValueError\n    eq_(ifail(1), None)\n\n    with patch.dict('os.environ', {'DATALAD_ALLOW_FAIL': '1'}):\n        # decision to create failing or not failing function\n        # is done at the time of decoration\n        @never_fail\n        def ifail2(arg):\n            raise ValueError\n\n        assert_raises(ValueError, ifail2, 1)\n\n\n@with_tempfile\ndef test_is_interactive(fout):\n    # must not fail if one of the streams is no longer open:\n    # https://github.com/datalad/datalad/issues/3267\n    from datalad.cmd import Runner\n\n    bools = [\"False\", \"True\"]\n\n    def get_interactive(py_pre=\"\", **run_kwargs):\n        out, err = Runner().run(\n            [sys.executable,\n             \"-c\",\n             py_pre +\n             'from datalad.utils import is_interactive; '\n             'f = open(%r, \"w\"); '\n             'f.write(str(is_interactive())); '\n             'f.close()'\n             % fout\n             ],\n            **run_kwargs\n        )\n        with open(fout) as f:\n            out = f.read()\n        assert_in(out, bools)\n        return bool(bools.index(out))\n\n    # we never request for pty in our Runner, so can't be interactive\n    eq_(get_interactive(), False)\n    # and it must not crash if smth is closed\n    for o in ('stderr', 'stdin', 'stdout'):\n        eq_(get_interactive(\"import sys; sys.%s.close(); \" % o), False)\n\n",
        "import pytest\nimport tempfile\nimport os\n\n\n@pytest.fixture\ndef path():\n    with tempfile.TemporaryDirectory() as tmpdir:\n        yield tmpdir\n\n\n@pytest.fixture(autouse=True)\ndef setup_git_config():\n    with tempfile.TemporaryDirectory() as home:\n        old_home = os.environ.get(\"HOME\")\n        os.environ[\"HOME\"] = home\n        os.system('git config --global user.name \"DataLad Tester\"')\n        os.system('git config --global user.email \"test@example.com\"')\n        yield\n        if old_home:\n            os.environ[\"HOME\"] = old_home\n"
    ],
    "test_file_names": [
        "test_1.py",
        "conftest.py"
    ],
    "setup_res_code": 0,
    "setup_res_stdout": "Starting Datalad installation attempts...\nVerifying installation...\nDatalad version: 0.12.4.dev14\n✅ Installation successful!\nSuccessfully installed Datalad using Python 3.9\n",
    "setup_res_stderr": "Using CPython 3.9.21\nCreating virtual environment at: .venv\nActivate with: source .venv/bin/activate\nResolved 25 packages in 181ms\nInstalled 25 packages in 5.17s\n + coverage==7.6.10\n + docopt==0.6.2\n + exceptiongroup==1.2.2\n + grabbit==0.2.6\n + importlib-resources==6.4.5\n + iniconfig==2.0.0\n + nibabel==5.3.2\n + num2words==0.5.14\n + numpy==2.0.2\n + packaging==24.2\n + pandas==2.2.3\n + patsy==1.0.1\n + pluggy==1.5.0\n + pybids==0.6.5\n + pytest==8.3.4\n + pytest-cov==6.0.0\n + python-dateutil==2.9.0.post0\n + pytz==2024.2\n + scipy==1.13.1\n + setuptools==75.6.0\n + six==1.17.0\n + tomli==2.2.1\n + typing-extensions==4.12.2\n + tzdata==2024.2\n + zipp==3.21.0\nResolved 65 packages in 4.18s\nPrepared 1 package in 3.95s\nInstalled 59 packages in 299ms\n + appdirs==1.4.4\n + backports-tarfile==1.2.0\n + beautifulsoup4==4.12.3\n + boto==2.49.0\n + certifi==2024.12.14\n + cffi==1.17.1\n + chardet==5.2.0\n + charset-normalizer==3.4.1\n + citeproc-py==0.6.0\n + cryptography==44.0.0\n + datalad==0.12.4 (from file:///home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10)\n + deprecated==1.2.15\n + distro==1.9.0\n + duecredit==0.10.2\n + exifread==3.0.0\n + fasteners==0.19\n + gitdb==4.0.12\n + gitpython==3.1.44\n + httpretty==1.1.4\n + humanize==4.11.0\n + idna==3.10\n + importlib-metadata==8.5.0\n + iso8601==2.1.0\n + jaraco-classes==3.4.0\n + jaraco-context==6.0.1\n + jaraco-functools==4.1.0\n + jeepney==0.8.0\n + jsmin==3.0.1\n + keyring==25.6.0\n + keyrings-alt==5.0.2\n + looseversion==1.3.0\n + lxml==5.3.0\n + more-itertools==10.5.0\n + msgpack==1.1.0\n + multidict==6.1.0\n + mutagen==1.47.0\n + nose==1.3.7\n + patool==1.15.0\n + pillow==11.0.0\n + propcache==0.2.1\n + pycparser==2.22\n + pygithub==2.5.0\n + pyjwt==2.10.1\n + pynacl==1.5.0\n + pyperclip==1.9.0\n + python-xmp-toolkit==2.0.2\n + pyyaml==6.0.2\n + requests==2.32.3\n + requests-ftp==0.3.1\n + secretstorage==3.3.3\n + simplejson==3.19.3\n + smmap==5.0.2\n + soupsieve==2.6\n + tqdm==4.67.1\n + urllib3==1.26.20\n + vcrpy==7.0.0\n + whoosh==2.7.4\n + wrapt==1.17.0\n + yarl==1.18.3\nResolved 99 packages in 166ms\nInstalled 32 packages in 825ms\n + alabaster==0.7.16\n + asv==0.6.4\n + asv-runner==0.2.1\n + babel==2.16.0\n + build==1.2.2.post1\n + distlib==0.3.9\n + docutils==0.21.2\n + filelock==3.16.1\n + gprof2dot==2024.6.6\n + imagesize==1.4.1\n + jinja2==3.1.5\n + json5==0.10.0\n + markupsafe==3.0.2\n + nose-timer==1.0.1\n + platformdirs==4.3.6\n + psutil==6.1.1\n + pygments==2.18.0\n + pympler==1.1\n + pypandoc==1.14\n + pyproject-hooks==1.2.0\n + snowballstemmer==2.2.0\n + sphinx==7.4.7\n + sphinx-rtd-theme==3.0.2\n + sphinxcontrib-applehelp==2.0.0\n + sphinxcontrib-devhelp==2.0.0\n + sphinxcontrib-htmlhelp==2.1.0\n + sphinxcontrib-jquery==4.1\n + sphinxcontrib-jsmath==1.0.1\n + sphinxcontrib-qthelp==2.0.0\n + sphinxcontrib-serializinghtml==2.0.0\n + tabulate==0.9.0\n + virtualenv==20.28.0\n",
    "new_commit_res_code": 1,
    "new_commit_res_stdout": "============================= test session starts ==============================\nplatform linux -- Python 3.9.21, pytest-8.3.4, pluggy-1.5.0\nrootdir: /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10\nplugins: cov-6.0.0\ncollected 67 items\n\nr2e_tests/test_1.py ..E.E..x.E.s.EEE........FE....E..........F.F.....sss [ 77%]\n.EEEEE.sFE..F.E                                                          [100%]\n\n==================================== ERRORS ====================================\n________________________ ERROR at setup of test_rotree _________________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 143\n  @with_tempfile(mkdir=True)\n  def test_rotree(d):\nE       fixture 'd' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:143\n_____________________ ERROR at setup of test_swallow_logs ______________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 184\n  @with_tempfile\n  def test_swallow_logs(logfile):\nE       fixture 'logfile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:184\n____________________ ERROR at setup of test_md5sum_archive _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 313\n  @with_tree([('1.tar.gz', (('1 f.txt', '1 f load'),))])\n  def test_md5sum_archive(d):\nE       fixture 'd' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:313\n__________________ ERROR at setup of test_getpwd_change_mode ___________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 352\n  @assert_cwd_unchanged(ok_to_chdir=True)\n  @with_tempfile(mkdir=True)\n  def test_getpwd_change_mode(tdir):\nE       fixture 'tdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:352\n____________________ ERROR at setup of test_getpwd_symlink _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 369\n  @skip_if_on_windows\n  @with_tempfile(mkdir=True)\n  @assert_cwd_unchanged\n  def test_getpwd_symlink(tdir):\nE       fixture 'tdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:369\n__________________ ERROR at setup of test_chpwd_obscure_name ___________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 405\n  @with_tempfile(mkdir=True)\n  def test_chpwd_obscure_name(topdir):\nE       fixture 'topdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:405\n________________ ERROR at setup of test_find_files_exclude_vcs _________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 535\n  @with_tree(tree={\n      '.git': {\n          '1': '2'\n      },\n      'd1': {\n          '.git': 'possibly a link from submodule'\n      },\n      'git': 'just a file'\n  })\n  def test_find_files_exclude_vcs(repo):\nE       fixture 'repo' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:535\n______________________ ERROR at setup of test_knows_annex ______________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 595\n  @with_tempfile\n  @with_tempfile\n  def test_knows_annex(here, there):\nE       fixture 'here' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:595\n_________________ ERROR at setup of test_read_csv_lines_basic __________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1033\n  @with_tempfile(content=\"h1 h2\\nv1 2\\nv2 3\")\n  def test_read_csv_lines_basic(infile):\nE       fixture 'infile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1033\n______________ ERROR at setup of test_read_csv_lines_tsv_unicode _______________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1047\n  @with_tempfile(content=u\"h1\\th2\\nv1\\tдата\".encode('utf-8'))\n  def test_read_csv_lines_tsv_unicode(infile):\nE       fixture 'infile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1047\n_______________ ERROR at setup of test_read_csv_lines_one_column _______________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1060\n  @with_tempfile(content=u\"h1\\nv1\\nv2\")\n  def test_read_csv_lines_one_column(infile):\nE       fixture 'infile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1060\n____________________ ERROR at setup of test_import_modules _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1086\n  @with_tree(tree=_get_testm_tree(1))\n  def test_import_modules(topdir):\nE       fixture 'topdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1086\n________________ ERROR at setup of test_import_module_from_file ________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1097\n  @with_tree(tree=_get_testm_tree(2))\n  def test_import_module_from_file(topdir):\nE       fixture 'topdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1097\n____________________ ERROR at setup of test_get_open_files _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1161\n  @with_tree({'1': 'content', 'd': {'2': 'more'}})\n  def test_get_open_files(p):\nE       fixture 'p' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1161\n____________________ ERROR at setup of test_is_interactive _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1259\n  @with_tempfile\n  def test_is_interactive(fout):\nE       fixture 'fout' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1259\n=================================== FAILURES ===================================\n_______________________________ test_find_files ________________________________\n\n    def test_find_files():\n        tests_dir = dirname(__file__)\n        proj_dir = normpath(opj(dirname(__file__), pardir))\n    \n        ff = find_files('.*', proj_dir)\n        ok_generator(ff)\n        files = list(ff)\n        assert(len(files) > 10)  # we have more than 10 test files here\n>       assert_in(opj(tests_dir, 'test_utils.py'), files)\n\nr2e_tests/test_1.py:515: \n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \n../../../../.local/share/uv/python/cpython-3.9.21-linux-x86_64-gnu/lib/python3.9/unittest/case.py:1104: in assertIn\n    self.fail(self._formatMessage(msg, standardMsg))\n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \n\nself = <nose.tools.trivial.Dummy testMethod=nop>\nmsg = \"'/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_ut...ucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/bisect-git-annex.scripts/bisect-git-annex-lock.sh']\"\n\n    def fail(self, msg=None):\n        \"\"\"Fail immediately, with the given message.\"\"\"\n>       raise self.failureException(msg)\nE       AssertionError: '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_utils.py' not found in ['/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/run_tests.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/.mailmap', 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'/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/testing/bad_internals/_scrapy/scrapy.py', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/testing/conf/apache-ssh-supervisor.conf', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/testing/conf/etc/apt/apt.conf.d/99apt-cacher', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/benchmark-travis-pr.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/install-annex-snapshot.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/prep-travis-forssh-sudo.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/gpg-90F7E9EB.pub', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/prep-travis-forssh.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/install-latest-git.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/appveyor_ssh_config', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/ci/prep-travis-devel-annex.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/bisect-git-annex.scripts/bisect-git-annex-doublepasswd.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/bisect-git-annex.scripts/bisect-git-annex-lock.sh']\n\n../../../../.local/share/uv/python/cpython-3.9.21-linux-x86_64-gnu/lib/python3.9/unittest/case.py:676: AssertionError\n_______________________________ test_path_prefix _______________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annex6aiec3fd'}\nfilename = '/tmp/datalad_temp_test_path_prefix3f7a2tpw'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_path_prefix() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n____________________________ test_get_dataset_root _____________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annexrzr9govi'}\nfilename = '/tmp/datalad_temp_test_get_dataset_roote_cciw8m'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_get_dataset_root() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n________________________________ test_dlabspath ________________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annex4sh7s55i'}\nfilename = '/tmp/datalad_temp_test_dlabspath5szrq3z_'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_dlabspath() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n_______________________________ test_create_tree _______________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annexd3nubzyk'}\nfilename = '/tmp/datalad_temp_test_create_treeoiznaw6k'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_create_tree() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n==================================== PASSES ====================================\n___________________________ test_swallow_logs_assert ___________________________\n------------------------------ Captured log call -------------------------------\nINFO     datalad.tests:test_1.py:208 something\n_____________________________ test_disable_logger ______________________________\n------------------------------ Captured log call -------------------------------\nDEBUG    datalad:test_1.py:244 log sth at top level\nDEBUG    datalad.tests:test_1.py:245 log sth at mid level\nDEBUG    datalad.tests.utils:test_1.py:246 log sth at bottom level\nDEBUG    datalad:test_1.py:253 log sth at top level\nDEBUG    datalad.tests:test_1.py:254 log sth at mid level\nDEBUG    datalad.tests.utils:test_1.py:255 log sth at bottom level\n________________________ test_known_failure_direct_mode ________________________\n------------------------------ Captured log call -------------------------------\nWARNING  datalad.tests:utils.py:849 Direct mode support is deprecated, so no point in using @known_failure_direct_mode for 'failing' since glorious future DataLad 0.12\n_______________________________ test_never_fail ________________________________\n----------------------------- Captured stderr call -----------------------------\n[WARNING] DataLad internal failure while running <function test_never_fail.<locals>.ifail at 0x7b68195aa4c0>: ValueError(). Please report at https://github.com/datalad/datalad/issues \n------------------------------ Captured log call -------------------------------\nWARNING  datalad.utils:utils.py:1076 DataLad internal failure while running <function test_never_fail.<locals>.ifail at 0x7b68195aa4c0>: ValueError(). Please report at https://github.com/datalad/datalad/issues\n=========================== short test summary info ============================\nPASSED r2e_tests/test_1.py::test_get_func_kwargs_doc\nPASSED r2e_tests/test_1.py::test_better_wraps\nPASSED r2e_tests/test_1.py::test_swallow_outputs\nPASSED r2e_tests/test_1.py::test_swallow_logs_assert\nPASSED r2e_tests/test_1.py::test_disable_logger\nPASSED r2e_tests/test_1.py::test_md5sum\nPASSED r2e_tests/test_1.py::test_updated\nPASSED r2e_tests/test_1.py::test_getpwd_basic\nPASSED r2e_tests/test_1.py::test_auto_repr\nPASSED r2e_tests/test_1.py::test_assure_iter\nPASSED r2e_tests/test_1.py::test_assure_list_copy\nPASSED r2e_tests/test_1.py::test_assure_list_from_str\nPASSED r2e_tests/test_1.py::test_assure_dict_from_str\nPASSED r2e_tests/test_1.py::test_assure_bool\nPASSED r2e_tests/test_1.py::test_generate_chunks\nPASSED r2e_tests/test_1.py::test_any_re_search\nPASSED r2e_tests/test_1.py::test_not_supported_on_windows\nPASSED r2e_tests/test_1.py::test_file_basename\nPASSED r2e_tests/test_1.py::test_expandpath\nPASSED r2e_tests/test_1.py::test_is_explicit_path\nPASSED r2e_tests/test_1.py::test_make_tempfile\nPASSED r2e_tests/test_1.py::test_unique\nPASSED r2e_tests/test_1.py::test_all_same\nPASSED r2e_tests/test_1.py::test_partition\nPASSED r2e_tests/test_1.py::test_path_\nPASSED r2e_tests/test_1.py::test_get_timestamp_suffix\nPASSED r2e_tests/test_1.py::test_memoized_generator\nPASSED r2e_tests/test_1.py::test_assure_unicode\nPASSED r2e_tests/test_1.py::test_pathlib_unicode\nPASSED r2e_tests/test_1.py::test_as_unicode\nPASSED r2e_tests/test_1.py::test_get_trace\nPASSED r2e_tests/test_1.py::test_path_startswith\nPASSED r2e_tests/test_1.py::test_path_is_subpath\nPASSED r2e_tests/test_1.py::test_safe_print\nPASSED r2e_tests/test_1.py::test_probe_known_failure\nPASSED r2e_tests/test_1.py::test_skip_if\nPASSED r2e_tests/test_1.py::test_known_failure_direct_mode\nPASSED r2e_tests/test_1.py::test_import_modules_fail\nPASSED r2e_tests/test_1.py::test_map_items\nPASSED r2e_tests/test_1.py::test_CMD_MAX_ARG\nPASSED r2e_tests/test_1.py::test_never_fail\nSKIPPED [1] .venv/lib/python3.9/site-packages/_pytest/unittest.py:385: TODO\nSKIPPED [3] .venv/lib/python3.9/site-packages/_pytest/unittest.py:385: Skip test known to fail\nSKIPPED [1] .venv/lib/python3.9/site-packages/_pytest/unittest.py:385: Module line_profiler fails to load: No module named 'line_profiler' [utils.py:skip_if_no_module:87]\nXFAIL r2e_tests/test_1.py::test_setup_exceptionhook - reason: [NOTRUN] yield tests were removed in pytest 4.0 - test_setup_exceptionhook will be ignored\nERROR r2e_tests/test_1.py::test_rotree\nERROR r2e_tests/test_1.py::test_swallow_logs\nERROR r2e_tests/test_1.py::test_md5sum_archive\nERROR r2e_tests/test_1.py::test_getpwd_change_mode\nERROR r2e_tests/test_1.py::test_getpwd_symlink\nERROR r2e_tests/test_1.py::test_chpwd_obscure_name\nERROR r2e_tests/test_1.py::test_find_files_exclude_vcs\nERROR r2e_tests/test_1.py::test_knows_annex\nERROR r2e_tests/test_1.py::test_read_csv_lines_basic\nERROR r2e_tests/test_1.py::test_read_csv_lines_tsv_unicode\nERROR r2e_tests/test_1.py::test_read_csv_lines_one_column\nERROR r2e_tests/test_1.py::test_import_modules\nERROR r2e_tests/test_1.py::test_import_module_from_file\nERROR r2e_tests/test_1.py::test_get_open_files\nERROR r2e_tests/test_1.py::test_is_interactive\nFAILED r2e_tests/test_1.py::test_find_files - AssertionError: '/home/gcpuser/...\nFAILED r2e_tests/test_1.py::test_path_prefix - TypeError: test_path_prefix() ...\nFAILED r2e_tests/test_1.py::test_get_dataset_root - TypeError: test_get_datas...\nFAILED r2e_tests/test_1.py::test_dlabspath - TypeError: test_dlabspath() got ...\nFAILED r2e_tests/test_1.py::test_create_tree - TypeError: test_create_tree() ...\n======== 5 failed, 41 passed, 5 skipped, 1 xfailed, 15 errors in 3.78s =========\n",
    "new_commit_res_stderr": "",
    "old_commit_res_code": 1,
    "old_commit_res_stdout": "============================= test session starts ==============================\nplatform linux -- Python 3.9.21, pytest-8.3.4, pluggy-1.5.0\nrootdir: /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10\nplugins: cov-6.0.0\ncollected 67 items\n\nr2e_tests/test_1.py ..E.E..x.E.s.EEEF.......FE....E..........F.F.....sss [ 77%]\n.EEEEE.sFE..F.E                                                          [100%]\n\n==================================== ERRORS ====================================\n________________________ ERROR at setup of test_rotree _________________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 143\n  @with_tempfile(mkdir=True)\n  def test_rotree(d):\nE       fixture 'd' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:143\n_____________________ ERROR at setup of test_swallow_logs ______________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 184\n  @with_tempfile\n  def test_swallow_logs(logfile):\nE       fixture 'logfile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:184\n____________________ ERROR at setup of test_md5sum_archive _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 313\n  @with_tree([('1.tar.gz', (('1 f.txt', '1 f load'),))])\n  def test_md5sum_archive(d):\nE       fixture 'd' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:313\n__________________ ERROR at setup of test_getpwd_change_mode ___________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 352\n  @assert_cwd_unchanged(ok_to_chdir=True)\n  @with_tempfile(mkdir=True)\n  def test_getpwd_change_mode(tdir):\nE       fixture 'tdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:352\n____________________ ERROR at setup of test_getpwd_symlink _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 369\n  @skip_if_on_windows\n  @with_tempfile(mkdir=True)\n  @assert_cwd_unchanged\n  def test_getpwd_symlink(tdir):\nE       fixture 'tdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:369\n__________________ ERROR at setup of test_chpwd_obscure_name ___________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 405\n  @with_tempfile(mkdir=True)\n  def test_chpwd_obscure_name(topdir):\nE       fixture 'topdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:405\n________________ ERROR at setup of test_find_files_exclude_vcs _________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 535\n  @with_tree(tree={\n      '.git': {\n          '1': '2'\n      },\n      'd1': {\n          '.git': 'possibly a link from submodule'\n      },\n      'git': 'just a file'\n  })\n  def test_find_files_exclude_vcs(repo):\nE       fixture 'repo' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:535\n______________________ ERROR at setup of test_knows_annex ______________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 595\n  @with_tempfile\n  @with_tempfile\n  def test_knows_annex(here, there):\nE       fixture 'here' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:595\n_________________ ERROR at setup of test_read_csv_lines_basic __________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1033\n  @with_tempfile(content=\"h1 h2\\nv1 2\\nv2 3\")\n  def test_read_csv_lines_basic(infile):\nE       fixture 'infile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1033\n______________ ERROR at setup of test_read_csv_lines_tsv_unicode _______________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1047\n  @with_tempfile(content=u\"h1\\th2\\nv1\\tдата\".encode('utf-8'))\n  def test_read_csv_lines_tsv_unicode(infile):\nE       fixture 'infile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1047\n_______________ ERROR at setup of test_read_csv_lines_one_column _______________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1060\n  @with_tempfile(content=u\"h1\\nv1\\nv2\")\n  def test_read_csv_lines_one_column(infile):\nE       fixture 'infile' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1060\n____________________ ERROR at setup of test_import_modules _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1086\n  @with_tree(tree=_get_testm_tree(1))\n  def test_import_modules(topdir):\nE       fixture 'topdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1086\n________________ ERROR at setup of test_import_module_from_file ________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1097\n  @with_tree(tree=_get_testm_tree(2))\n  def test_import_module_from_file(topdir):\nE       fixture 'topdir' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1097\n____________________ ERROR at setup of test_get_open_files _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1161\n  @with_tree({'1': 'content', 'd': {'2': 'more'}})\n  def test_get_open_files(p):\nE       fixture 'p' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1161\n____________________ ERROR at setup of test_is_interactive _____________________\nfile /home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py, line 1259\n  @with_tempfile\n  def test_is_interactive(fout):\nE       fixture 'fout' not found\n>       available fixtures: cache, capfd, capfdbinary, caplog, capsys, capsysbinary, cov, doctest_namespace, monkeypatch, no_cover, path, pytestconfig, record_property, record_testsuite_property, record_xml_attribute, recwarn, setup_git_config, tmp_path, tmp_path_factory, tmpdir, tmpdir_factory\n>       use 'pytest --fixtures [testpath]' for help on them.\n\n/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_1.py:1259\n=================================== FAILURES ===================================\n________________________________ test_auto_repr ________________________________\n\n    def test_auto_repr():\n    \n        class WithoutReprClass:\n            def __init__(self):\n                self.a = \"does not matter\"\n    \n        @auto_repr\n        class buga:\n            def __init__(self):\n                self.a = 1\n                self.b = list(range(100))\n                self.c = WithoutReprClass()\n                self._c = \"protect me\"\n    \n            def some(self):\n                return \"some\"\n    \n>       assert_equal(\n            repr(buga()),\n            \"buga(a=1, b=<<[0, 1, 2, 3, 4++372 chars++ 99]>>, c=<WithoutReprClass>)\"\n        )\n\nr2e_tests/test_1.py:431: \n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \n../../../../.local/share/uv/python/cpython-3.9.21-linux-x86_64-gnu/lib/python3.9/unittest/case.py:837: in assertEqual\n    assertion_func(first, second, msg=msg)\n../../../../.local/share/uv/python/cpython-3.9.21-linux-x86_64-gnu/lib/python3.9/unittest/case.py:1217: in assertMultiLineEqual\n    self.fail(self._formatMessage(msg, standardMsg))\n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \n\nself = <nose.tools.trivial.Dummy testMethod=nop>\nmsg = \"'buga(a=1, b=<<[0, 1, 2, 3, 4, 5, 6, ...>>, c=<WithoutReprClass>)' != 'buga(a=1, b=<<[0, 1, 2, 3, 4++372 chars++ 99]>...a(a=1, b=<<[0, 1, 2, 3, 4++372 chars++ 99]>>, c=<WithoutReprClass>)\\n?                             ^^^^^^^^^^^^^^^^^\\n\"\n\n    def fail(self, msg=None):\n        \"\"\"Fail immediately, with the given message.\"\"\"\n>       raise self.failureException(msg)\nE       AssertionError: 'buga(a=1, b=<<[0, 1, 2, 3, 4, 5, 6, ...>>, c=<WithoutReprClass>)' != 'buga(a=1, b=<<[0, 1, 2, 3, 4++372 chars++ 99]>>, c=<WithoutReprClass>)'\nE       - buga(a=1, b=<<[0, 1, 2, 3, 4, 5, 6, ...>>, c=<WithoutReprClass>)\nE       ?                             ^^^^^^^^^^^\nE       + buga(a=1, b=<<[0, 1, 2, 3, 4++372 chars++ 99]>>, c=<WithoutReprClass>)\nE       ?                             ^^^^^^^^^^^^^^^^^\n\n../../../../.local/share/uv/python/cpython-3.9.21-linux-x86_64-gnu/lib/python3.9/unittest/case.py:676: AssertionError\n_______________________________ test_find_files ________________________________\n\n    def test_find_files():\n        tests_dir = dirname(__file__)\n        proj_dir = normpath(opj(dirname(__file__), pardir))\n    \n        ff = find_files('.*', proj_dir)\n        ok_generator(ff)\n        files = list(ff)\n        assert(len(files) > 10)  # we have more than 10 test files here\n>       assert_in(opj(tests_dir, 'test_utils.py'), files)\n\nr2e_tests/test_1.py:515: \n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \n../../../../.local/share/uv/python/cpython-3.9.21-linux-x86_64-gnu/lib/python3.9/unittest/case.py:1104: in assertIn\n    self.fail(self._formatMessage(msg, standardMsg))\n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \n\nself = <nose.tools.trivial.Dummy testMethod=nop>\nmsg = \"'/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_ut...ucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tools/bisect-git-annex.scripts/bisect-git-annex-lock.sh']\"\n\n    def fail(self, msg=None):\n        \"\"\"Fail immediately, with the given message.\"\"\"\n>       raise self.failureException(msg)\nE       AssertionError: '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/r2e_tests/test_utils.py' not found in ['/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/run_tests.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/.mailmap', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/CONTRIBUTING.md', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/CODE_OF_CONDUCT.md', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/CONTRIBUTORS', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/.gitmodules', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/tox.ini', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/.zenodo.json', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/appveyor.yml', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/.noannex', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/asv.conf.json', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/requirements.txt', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/.travis.yml', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/install.sh', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/COPYING', '/home/gcpuser/buckets/local_repoeval_bucket/repos/datalad_a579fd373c58c2bcc9b68c36cb90c2042bc83a10/Gruntfile.js', 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AssertionError\n_______________________________ test_path_prefix _______________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annex6kaeu1a2'}\nfilename = '/tmp/datalad_temp_test_path_prefixc75a8i66'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_path_prefix() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n____________________________ test_get_dataset_root _____________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annexod5z0b_g'}\nfilename = '/tmp/datalad_temp_test_get_dataset_rootmuqp50dk'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_get_dataset_root() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n________________________________ test_dlabspath ________________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annexam_wqqdo'}\nfilename = '/tmp/datalad_temp_test_dlabspath96469fgq'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_dlabspath() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n_______________________________ test_create_tree _______________________________\n\narg = (), kw = {'path': '/tmp/tmp-page2annex0nk7nqf1'}\nfilename = '/tmp/datalad_temp_test_create_treeyda1_59w'\n\n    @wraps(t)\n    def newfunc(*arg, **kw):\n        with make_tempfile(wrapped=t, **tkwargs) as filename:\n>           return t(*(arg + (filename,)), **kw)\nE           TypeError: test_create_tree() got multiple values for argument 'path'\n\ndatalad/tests/utils.py:732: TypeError\n==================================== PASSES ====================================\n___________________________ test_swallow_logs_assert ___________________________\n------------------------------ Captured log call -------------------------------\nINFO     datalad.tests:test_1.py:208 something\n_____________________________ test_disable_logger ______________________________\n------------------------------ Captured log call -------------------------------\nDEBUG    datalad:test_1.py:244 log sth at top level\nDEBUG    datalad.tests:test_1.py:245 log sth at mid level\nDEBUG    datalad.tests.utils:test_1.py:246 log sth at bottom level\nDEBUG    datalad:test_1.py:253 log sth at top level\nDEBUG    datalad.tests:test_1.py:254 log sth at mid level\nDEBUG    datalad.tests.utils:test_1.py:255 log sth at bottom level\n________________________ test_known_failure_direct_mode ________________________\n------------------------------ Captured log call -------------------------------\nWARNING  datalad.tests:utils.py:849 Direct mode support is deprecated, so no point in using @known_failure_direct_mode for 'failing' since glorious future DataLad 0.12\n_______________________________ test_never_fail ________________________________\n----------------------------- Captured stderr call -----------------------------\n[WARNING] DataLad internal failure while running <function test_never_fail.<locals>.ifail at 0x71d1a2249d30>: ValueError(). Please report at https://github.com/datalad/datalad/issues \n------------------------------ Captured log call -------------------------------\nWARNING  datalad.utils:utils.py:1072 DataLad internal failure while running <function test_never_fail.<locals>.ifail at 0x71d1a2249d30>: ValueError(). Please report at https://github.com/datalad/datalad/issues\n=========================== short test summary info ============================\nPASSED r2e_tests/test_1.py::test_get_func_kwargs_doc\nPASSED r2e_tests/test_1.py::test_better_wraps\nPASSED r2e_tests/test_1.py::test_swallow_outputs\nPASSED r2e_tests/test_1.py::test_swallow_logs_assert\nPASSED r2e_tests/test_1.py::test_disable_logger\nPASSED r2e_tests/test_1.py::test_md5sum\nPASSED r2e_tests/test_1.py::test_updated\nPASSED r2e_tests/test_1.py::test_getpwd_basic\nPASSED r2e_tests/test_1.py::test_assure_iter\nPASSED r2e_tests/test_1.py::test_assure_list_copy\nPASSED r2e_tests/test_1.py::test_assure_list_from_str\nPASSED r2e_tests/test_1.py::test_assure_dict_from_str\nPASSED r2e_tests/test_1.py::test_assure_bool\nPASSED r2e_tests/test_1.py::test_generate_chunks\nPASSED r2e_tests/test_1.py::test_any_re_search\nPASSED r2e_tests/test_1.py::test_not_supported_on_windows\nPASSED r2e_tests/test_1.py::test_file_basename\nPASSED r2e_tests/test_1.py::test_expandpath\nPASSED r2e_tests/test_1.py::test_is_explicit_path\nPASSED r2e_tests/test_1.py::test_make_tempfile\nPASSED r2e_tests/test_1.py::test_unique\nPASSED r2e_tests/test_1.py::test_all_same\nPASSED r2e_tests/test_1.py::test_partition\nPASSED r2e_tests/test_1.py::test_path_\nPASSED r2e_tests/test_1.py::test_get_timestamp_suffix\nPASSED r2e_tests/test_1.py::test_memoized_generator\nPASSED r2e_tests/test_1.py::test_assure_unicode\nPASSED r2e_tests/test_1.py::test_pathlib_unicode\nPASSED r2e_tests/test_1.py::test_as_unicode\nPASSED r2e_tests/test_1.py::test_get_trace\nPASSED r2e_tests/test_1.py::test_path_startswith\nPASSED r2e_tests/test_1.py::test_path_is_subpath\nPASSED r2e_tests/test_1.py::test_safe_print\nPASSED r2e_tests/test_1.py::test_probe_known_failure\nPASSED r2e_tests/test_1.py::test_skip_if\nPASSED r2e_tests/test_1.py::test_known_failure_direct_mode\nPASSED r2e_tests/test_1.py::test_import_modules_fail\nPASSED r2e_tests/test_1.py::test_map_items\nPASSED r2e_tests/test_1.py::test_CMD_MAX_ARG\nPASSED r2e_tests/test_1.py::test_never_fail\nSKIPPED [1] .venv/lib/python3.9/site-packages/_pytest/unittest.py:385: TODO\nSKIPPED [3] .venv/lib/python3.9/site-packages/_pytest/unittest.py:385: Skip test known to fail\nSKIPPED [1] .venv/lib/python3.9/site-packages/_pytest/unittest.py:385: Module line_profiler fails to load: No module named 'line_profiler' [utils.py:skip_if_no_module:87]\nXFAIL r2e_tests/test_1.py::test_setup_exceptionhook - reason: [NOTRUN] yield tests were removed in pytest 4.0 - test_setup_exceptionhook will be ignored\nERROR r2e_tests/test_1.py::test_rotree\nERROR r2e_tests/test_1.py::test_swallow_logs\nERROR r2e_tests/test_1.py::test_md5sum_archive\nERROR r2e_tests/test_1.py::test_getpwd_change_mode\nERROR r2e_tests/test_1.py::test_getpwd_symlink\nERROR r2e_tests/test_1.py::test_chpwd_obscure_name\nERROR r2e_tests/test_1.py::test_find_files_exclude_vcs\nERROR r2e_tests/test_1.py::test_knows_annex\nERROR r2e_tests/test_1.py::test_read_csv_lines_basic\nERROR r2e_tests/test_1.py::test_read_csv_lines_tsv_unicode\nERROR r2e_tests/test_1.py::test_read_csv_lines_one_column\nERROR r2e_tests/test_1.py::test_import_modules\nERROR r2e_tests/test_1.py::test_import_module_from_file\nERROR r2e_tests/test_1.py::test_get_open_files\nERROR r2e_tests/test_1.py::test_is_interactive\nFAILED r2e_tests/test_1.py::test_auto_repr - AssertionError: 'buga(a=1, b=<<[...\nFAILED r2e_tests/test_1.py::test_find_files - AssertionError: '/home/gcpuser/...\nFAILED r2e_tests/test_1.py::test_path_prefix - TypeError: test_path_prefix() ...\nFAILED r2e_tests/test_1.py::test_get_dataset_root - TypeError: test_get_datas...\nFAILED r2e_tests/test_1.py::test_dlabspath - TypeError: test_dlabspath() got ...\nFAILED r2e_tests/test_1.py::test_create_tree - TypeError: test_create_tree() ...\n======== 6 failed, 40 passed, 5 skipped, 1 xfailed, 15 errors in 2.28s =========\n",
    "old_commit_res_stderr": ""
}
datalad/tests/test_utils.py datalad/utils.py
We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
**Analysis:**

- **Key Parts from Commit Details:**
  - **Commit Message:** Enhances `shortened_repr` to inform how many characters are not shown.
  - **Changes:** Replaces `...` with `++??? chars++` in the middle of the representation, showing the trailer of the original `repr`.
  - **Test Change:** The `test_auto_repr` was failing due to the old representation format and now passes with the new format.

- **Main Problem Highlighted by Test Results:**
  - Before the commit, the `shortened_repr` function did not indicate the number of truncated characters, leading to failing tests that expected the new format.

- **Expected Behavior:**
  - The `shortened_repr` should display the number of characters omitted and include a snippet from the end of the original representation, especially useful for complex structures like lists or tuples.

- **Actual Behavior or Error Message:**
  - The function only appends `...` at the end, without indicating the number of hidden characters, causing discrepancies in representations and test failures.

- **Issue Description:**
  - The `shortened_repr` function lacks clarity in representing truncated strings or data structures by not indicating the number of omitted characters. This leads to confusion when inspecting complex objects and causes related tests to fail due to unexpected representation formats.

---

[ISSUE]
**Title:** `shortened_repr` Does Not Indicate Number of Truncated Characters

**Description:**
When using the `shortened_repr` function on lengthy representations of objects, it simply appends `...` to indicate truncation. This makes it unclear how many characters are omitted, which is particularly problematic for complex data structures like lists or tuples where understanding the end of the structure is important.

**Example Code:**
```python
def shortened_repr(value, l=30):
    if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):
        value_repr = repr(value)
        if not value_repr.startswith('<') and len(value_repr) > l:
            value_repr = f"<<{value_repr[:l - 8]}...>>"
    return value_repr

class WithoutReprClass:
    def __init__(self):
        self.a = 'does not matter'

@auto_repr
class Buga:
    def __init__(self):
        self.a = 1
        self.b = list(range(100))
        self.c = WithoutReprClass()
        self._c = 'protect me'

def example():
    print(repr(Buga()))
```

**Expected Behavior:**
The `shortened_repr` function should display the number of characters that have been truncated and include a snippet from the end of the original representation. For example, a list should show the beginning elements, indicate how many characters are hidden, and then show the last few elements to provide better context.

**Actual Behavior:**
The function only appends `...` without indicating the number of hidden characters, resulting in representations like:
```
buga(a=1, b=<<[0, 1, 2, 3, 4, 5, 6, ...>>, c=<WithoutReprClass>)
```
This makes it difficult to understand the extent of the truncation and the structure of the represented object.

[/ISSUE]
--- END ISSUE ---

Below are some code segments, each from a relevant file. One or more of these files may contain bugs.

--- BEGIN FILE ---
```
### datalad/utils.py
# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-
# ex: set sts=4 ts=4 sw=4 noet:
# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
#
#   See COPYING file distributed along with the datalad package for the
#   copyright and license terms.
#
# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##

import collections
import hashlib
import re
import builtins
import time

try:
    from collections.abc import Callable
except ImportError:  # Python <= 3.3
    from collections import Callable

import logging
import shutil
import os
import sys
import tempfile
import platform
import gc
import glob
import gzip
import string
import warnings
import wrapt

from copy import copy as shallow_copy
from contextlib import contextmanager
from functools import wraps
from time import sleep
import inspect
from itertools import tee

import os.path as op
from os.path import sep as dirsep
from os.path import commonprefix
from os.path import curdir, basename, exists, realpath, islink, join as opj
from os.path import isabs, normpath, expandvars, expanduser, abspath, sep
from os.path import isdir
from os.path import relpath
from os.path import stat
from os.path import dirname
from os.path import split as psplit
import posixpath

from shlex import (
    quote as shlex_quote,
    split as shlex_split,
)

# from datalad.dochelpers import get_docstring_split
from datalad.consts import TIMESTAMP_FMT


unicode_srctypes = str, bytes


lgr = logging.getLogger("datalad.utils")

lgr.log(5, "Importing datalad.utils")
#
# Some useful variables
#
platform_system = platform.system().lower()
on_windows = platform_system == 'windows'
on_osx = platform_system == 'darwin'
on_linux = platform_system == 'linux'
on_msys_tainted_paths = on_windows \
                        and 'MSYS_NO_PATHCONV' not in os.environ \
                        and os.environ.get('MSYSTEM', '')[:4] in ('MSYS', 'MING')


def get_linux_distribution():
    """Compatibility wrapper for {platform,distro}.linux_distribution().
    """
    if hasattr(platform, "linux_distribution"):
        # Use deprecated (but faster) method if it's available.
        with warnings.catch_warnings():
            warnings.filterwarnings("ignore", category=DeprecationWarning)
            result = platform.linux_distribution()
    else:
        import distro  # We require this for Python 3.8 and above.
        result = distro.linux_distribution(full_distribution_name=False)
    return result


try:
    linux_distribution_name, linux_distribution_release \
        = get_linux_distribution()[:2]
    on_debian_wheezy = on_linux \
                       and linux_distribution_name == 'debian' \
                       and linux_distribution_release.startswith('7.')
except:  # pragma: no cover
    # MIH: IndexError?
    on_debian_wheezy = False
    linux_distribution_name = linux_distribution_release = None

# Maximal length of cmdline string
# Query the system and use hardcoded "knowledge" if None
# probably   getconf ARG_MAX   might not be available
# The last one would be the most conservative/Windows
CMD_MAX_ARG_HARDCODED = 2097152 if on_linux else 262144 if on_osx else 32767
try:
    CMD_MAX_ARG = os.sysconf('SC_ARG_MAX')
    assert CMD_MAX_ARG > 0
    if sys.version_info[:2] == (3, 4):
        # workaround for some kind of a bug which comes up with python 3.4
        # see https://github.com/datalad/datalad/issues/3150
        CMD_MAX_ARG = min(CMD_MAX_ARG, CMD_MAX_ARG_HARDCODED)
except Exception as exc:
    # ATM (20181005) SC_ARG_MAX available only on POSIX systems
    # so exception would be thrown e.g. on Windows, or
    # somehow during Debian build for nd14.04 it is coming up with -1:
    # https://github.com/datalad/datalad/issues/3015
    CMD_MAX_ARG = CMD_MAX_ARG_HARDCODED
    lgr.debug(
        "Failed to query or got useless SC_ARG_MAX sysconf, "
        "will use hardcoded value: %s", exc)
# Even with all careful computations we do, due to necessity to account for
# environment and what not, we still could not figure out "exact" way to
# estimate it, but it was shown that 300k safety margin on linux was sufficient.
# https://github.com/datalad/datalad/pull/2977#issuecomment-436264710
# 300k is ~15%, so to be safe, and for paranoid us we will just use up to 50%
# of the length for "safety margin".  We might probably still blow due to
# env vars, unicode, etc...  so any hard limit imho is not a proper solution
CMD_MAX_ARG = int(0.5 * CMD_MAX_ARG)
lgr.debug(
    "Maximal length of cmdline string (adjusted for safety margin): %d",
    CMD_MAX_ARG)

#
# Little helpers
#

# `getargspec` has been deprecated in Python 3.
if hasattr(inspect, "getfullargspec"):
    ArgSpecFake = collections.namedtuple(
        "ArgSpecFake", ["args", "varargs", "keywords", "defaults"])

    def getargspec(func):
        return ArgSpecFake(*inspect.getfullargspec(func)[:4])
else:
    getargspec = inspect.getargspec


def get_func_kwargs_doc(func):
    """ Provides args for a function

    Parameters
    ----------
    func: str
      name of the function from which args are being requested

    Returns
    -------
    list
      of the args that a function takes in
    """
    return getargspec(func)[0]

    # TODO: format error message with descriptions of args
    # return [repr(dict(get_docstring_split(func)[1]).get(x)) for x in getargspec(func)[0]]


def any_re_search(regexes, value):
    """Return if any of regexes (list or str) searches succesfully for value"""
    for regex in ensure_tuple_or_list(regexes):
        if re.search(regex, value):
            return True
    return False


def not_supported_on_windows(msg=None):
    """A little helper to be invoked to consistently fail whenever functionality is
    not supported (yet) on Windows
    """
    if on_windows:
        raise NotImplementedError("This functionality is not yet implemented for Windows OS"
                                  + (": %s" % msg if msg else ""))


def shortened_repr(value, l=30):
    try:
        if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):
            value_repr = repr(value)
            if not value_repr.startswith('<') and len(value_repr) > l:
                value_repr = "<<%s...>>" % (value_repr[:l - 8])
            elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':
                raise ValueError("I hate those useless long reprs")
        else:
            raise ValueError("gimme class")
    except Exception as e:
        value_repr = "<%s>" % value.__class__.__name__.split('.')[-1]
    return value_repr


def __auto_repr__(obj):
    attr_names = tuple()
    if hasattr(obj, '__dict__'):
        attr_names += tuple(obj.__dict__.keys())
    if hasattr(obj, '__slots__'):
        attr_names += tuple(obj.__slots__)

    items = []
    for attr in sorted(set(attr_names)):
        if attr.startswith('_'):
            continue
        value = getattr(obj, attr)
        # TODO:  should we add this feature to minimize some talktative reprs
        # such as of URL?
        #if value is None:
        #    continue
        items.append("%s=%s" % (attr, shortened_repr(value)))

    return "%s(%s)" % (obj.__class__.__name__, ', '.join(items))


def auto_repr(cls):
    """Decorator for a class to assign it an automagic quick and dirty __repr__

    It uses public class attributes to prepare repr of a class

    Original idea: http://stackoverflow.com/a/27799004/1265472
    """

    cls.__repr__ = __auto_repr__
    return cls


def _is_stream_tty(stream):
    try:
        # TODO: check on windows if hasattr check would work correctly and
        # add value:
        return stream.isatty()
    except ValueError as exc:
        # Who knows why it is a ValueError, but let's try to be specific
        # If there is a problem with I/O - non-interactive, otherwise reraise
        if "I/O" in str(exc):
            return False
        raise


def is_interactive():
    """Return True if all in/outs are open and tty.

    Note that in a somewhat abnormal case where e.g. stdin is explicitly
    closed, and any operation on it would raise a
    `ValueError("I/O operation on closed file")` exception, this function
    would just return False, since the session cannot be used interactively.
    """
    return all(_is_stream_tty(s) for s in (sys.stdin, sys.stdout, sys.stderr))


def get_ipython_shell():
    """Detect if running within IPython and returns its `ip` (shell) object

    Returns None if not under ipython (no `get_ipython` function)
    """
    try:
        return get_ipython()
    except NameError:
        return None


def md5sum(filename):
    """Compute an MD5 sum for the given file
    """
    from datalad.support.digests import Digester
    return Digester(digests=['md5'])(filename)['md5']


def sorted_files(dout):
    """Return a (sorted) list of files under dout
    """
    return sorted(sum([[opj(r, f)[len(dout) + 1:] for f in files]
                       for r, d, files in os.walk(dout)
                       if not '.git' in r], []))

_encoded_dirsep = r'\\'  if on_windows else r'/'
_VCS_REGEX = r'%s\.(?:git|gitattributes|svn|bzr|hg)(?:%s|$)' % (
    _encoded_dirsep, _encoded_dirsep)
_DATALAD_REGEX = r'%s\.(?:datalad)(?:%s|$)' % (
    _encoded_dirsep, _encoded_dirsep)


def find_files(regex, topdir=curdir, exclude=None, exclude_vcs=True, exclude_datalad=False, dirs=False):
    """Generator to find files matching regex

    Parameters
    ----------
    regex: basestring
    exclude: basestring, optional
      Matches to exclude
    exclude_vcs:
      If True, excludes commonly known VCS subdirectories.  If string, used
      as regex to exclude those files (regex: `%r`)
    exclude_datalad:
      If True, excludes files known to be datalad meta-data files (e.g. under
      .datalad/ subdirectory) (regex: `%r`)
    topdir: basestring, optional
      Directory where to search
    dirs: bool, optional
      Whether to match directories as well as files
    """
    for dirpath, dirnames, filenames in os.walk(topdir):
        names = (dirnames + filenames) if dirs else filenames
        # TODO: might want to uniformize on windows to use '/'
        paths = (opj(dirpath, name) for name in names)
        for path in filter(re.compile(regex).search, paths):
            path = path.rstrip(dirsep)
            if exclude and re.search(exclude, path):
                continue
            if exclude_vcs and re.search(_VCS_REGEX, path):
                continue
            if exclude_datalad and re.search(_DATALAD_REGEX, path):
                continue
            yield path
find_files.__doc__ %= (_VCS_REGEX, _DATALAD_REGEX)


def expandpath(path, force_absolute=True):
    """Expand all variables and user handles in a path.

    By default return an absolute path
    """
    path = expandvars(expanduser(path))
    if force_absolute:
        path = abspath(path)
    return path


def posix_relpath(path, start=None):
    """Behave like os.path.relpath, but always return POSIX paths...

    on any platform."""
    # join POSIX style
    return posixpath.join(
        # split and relpath native style
        # python2.7 ntpath implementation of relpath cannot handle start=None
        *psplit(
            relpath(path, start=start if start is not None else '')))


def is_explicit_path(path):
    """Return whether a path explicitly points to a location

    Any absolute path, or relative path starting with either '../' or
    './' is assumed to indicate a location on the filesystem. Any other
    path format is not considered explicit."""
    path = expandpath(path, force_absolute=False)
    return isabs(path) \
        or path.startswith(os.curdir + os.sep) \
        or path.startswith(os.pardir + os.sep)


# handle this dance once, and import pathlib from here
# in all other places

from pathlib import (
    Path,
    PurePath,
    PurePosixPath,
)


def rotree(path, ro=True, chmod_files=True):
    """To make tree read-only or writable

    Parameters
    ----------
    path : string
      Path to the tree/directory to chmod
    ro : bool, optional
      Whether to make it R/O (default) or RW
    chmod_files : bool, optional
      Whether to operate also on files (not just directories)
    """
    if ro:
        chmod = lambda f: os.chmod(f, os.stat(f).st_mode & ~stat.S_IWRITE)
    else:
        chmod = lambda f: os.chmod(f, os.stat(f).st_mode | stat.S_IWRITE | stat.S_IREAD)

    for root, dirs, files in os.walk(path, followlinks=False):
        if chmod_files:
            for f in files:
                fullf = opj(root, f)
                # might be the "broken" symlink which would fail to stat etc
                if exists(fullf):
                    chmod(fullf)
        chmod(root)


def rmtree(path, chmod_files='auto', children_only=False, *args, **kwargs):
    """To remove git-annex .git it is needed to make all files and directories writable again first

    Parameters
    ----------
    chmod_files : string or bool, optional
       Whether to make files writable also before removal.  Usually it is just
       a matter of directories to have write permissions.
       If 'auto' it would chmod files on windows by default
    children_only : bool, optional
       If set, all files and subdirectories would be removed while the path
       itself (must be a directory) would be preserved
    `*args` :
    `**kwargs` :
       Passed into shutil.rmtree call
    """
    # Give W permissions back only to directories, no need to bother with files
    if chmod_files == 'auto':
        chmod_files = on_windows
    # TODO:  yoh thinks that if we could quickly check our Flyweight for
    #        repos if any of them is under the path, and could call .precommit
    #        on those to possibly stop batched processes etc, we did not have
    #        to do it on case by case
    # Check for open files
    assert_no_open_files(path)

    if children_only:
        if not os.path.isdir(path):
            raise ValueError("Can remove children only of directories")
        for p in os.listdir(path):
            rmtree(op.join(path, p))
        return
    if not (os.path.islink(path) or not os.path.isdir(path)):
        rotree(path, ro=False, chmod_files=chmod_files)
        _rmtree(path, *args, **kwargs)
    else:
        # just remove the symlink
        unlink(path)


def rmdir(path, *args, **kwargs):
    """os.rmdir with our optional checking for open files"""
    assert_no_open_files(path)
    os.rmdir(path)


def get_open_files(path, log_open=False):
    """Get open files under a path

    Parameters
    ----------
    path : str
      File or directory to check for open files under
    log_open : bool or int
      If set - logger level to use

    Returns
    -------
    dict
      path : pid

    """
    # Original idea: https://stackoverflow.com/a/11115521/1265472
    import psutil
    files = {}
    # since the ones returned by psutil would not be aware of symlinks in the
    # path we should also get realpath for path
    path = realpath(path)
    for proc in psutil.process_iter():
        try:
            open_paths = [p.path for p in proc.open_files()] + [proc.cwd()]
            for p in open_paths:
                # note: could be done more efficiently so we do not
                # renormalize path over and over again etc
                if path_startswith(p, path):
                    files[p] = proc
        # Catch a race condition where a process ends
        # before we can examine its files
        except psutil.NoSuchProcess:
            pass
        except psutil.AccessDenied:
            pass

    if files and log_open:
        lgr.log(log_open, "Open files under %s: %s", path, files)
    return files


_assert_no_open_files_cfg = os.environ.get('DATALAD_ASSERT_NO_OPEN_FILES')
if _assert_no_open_files_cfg:
    def assert_no_open_files(path):
        files = get_open_files(path, log_open=40)
        if _assert_no_open_files_cfg == 'assert':
            assert not files
        elif files:
            if _assert_no_open_files_cfg == 'pdb':
                import pdb
                pdb.set_trace()
            elif _assert_no_open_files_cfg == 'epdb':
                import epdb
                epdb.serve()
            pass
        # otherwise we would just issue that error message in the log
else:
    def assert_no_open_files(*args, **kwargs):
        pass


def rmtemp(f, *args, **kwargs):
    """Wrapper to centralize removing of temp files so we could keep them around

    It will not remove the temporary file/directory if DATALAD_TESTS_TEMP_KEEP
    environment variable is defined
    """
    if not os.environ.get('DATALAD_TESTS_TEMP_KEEP'):
        if not os.path.lexists(f):
            lgr.debug("Path %s does not exist, so can't be removed" % f)
            return
        lgr.log(5, "Removing temp file: %s" % f)
        # Can also be a directory
        if os.path.isdir(f):
            rmtree(f, *args, **kwargs)
        else:
            unlink(f)
    else:
        lgr.info("Keeping temp file: %s" % f)


def file_basename(name, return_ext=False):
    """
    Strips up to 2 extensions of length up to 4 characters and starting with alpha
    not a digit, so we could get rid of .tar.gz etc
    """
    bname = basename(name)
    fbname = re.sub(r'(\.[a-zA-Z_]\S{1,4}){0,2}$', '', bname)
    if return_ext:
        return fbname, bname[len(fbname) + 1:]
    else:
        return fbname


def escape_filename(filename):
    """Surround filename in "" and escape " in the filename
    """
    filename = filename.replace('"', r'\"').replace('`', r'\`')
    filename = '"%s"' % filename
    return filename


def encode_filename(filename):
    """Encode unicode filename
    """
    if isinstance(filename, str):
        return filename.encode(sys.getfilesystemencoding())
    else:
        return filename


def decode_input(s):
    """Given input string/bytes, decode according to stdin codepage (or UTF-8)
    if not defined

    If fails -- issue warning and decode allowing for errors
    being replaced
    """
    if isinstance(s, str):
        return s
    else:
        encoding = sys.stdin.encoding or 'UTF-8'
        try:
            return s.decode(encoding)
        except UnicodeDecodeError as exc:
            lgr.warning(
                "Failed to decode input string using %s encoding. "
                "Decoding allowing for errors", encoding)
            return s.decode(encoding, errors='replace')


if on_windows:
    def lmtime(filepath, mtime):
        """Set mtime for files.  On Windows a merely adapter to os.utime
        """
        os.utime(filepath, (time.time(), mtime))
else:
    def lmtime(filepath, mtime):
        """Set mtime for files, while not de-referencing symlinks.

        To overcome absence of os.lutime

        Works only on linux and OSX ATM
        """
        from .cmd import Runner
        # convert mtime to format touch understands [[CC]YY]MMDDhhmm[.SS]
        smtime = time.strftime("%Y%m%d%H%M.%S", time.localtime(mtime))
        lgr.log(3, "Setting mtime for %s to %s == %s", filepath, mtime, smtime)
        Runner().run(['touch', '-h', '-t', '%s' % smtime, filepath])
        rfilepath = realpath(filepath)
        if islink(filepath) and exists(rfilepath):
            # trust noone - adjust also of the target file
            # since it seemed like downloading under OSX (was it using curl?)
            # didn't bother with timestamps
            lgr.log(3, "File is a symlink to %s Setting mtime for it to %s",
                    rfilepath, mtime)
            os.utime(rfilepath, (time.time(), mtime))
        # doesn't work on OSX
        # Runner().run(['touch', '-h', '-d', '@%s' % mtime, filepath])


def ensure_tuple_or_list(obj):
    """Given an object, wrap into a tuple if not list or tuple
    """
    if isinstance(obj, (list, tuple)):
        return obj
    return (obj,)


def ensure_iter(s, cls, copy=False, iterate=True):
    """Given not a list, would place it into a list. If None - empty list is returned

    Parameters
    ----------
    s: list or anything
    cls: class
      Which iterable class to ensure
    copy: bool, optional
      If correct iterable is passed, it would generate its shallow copy
    iterate: bool, optional
      If it is not a list, but something iterable (but not a str)
      iterate over it.
    """

    if isinstance(s, cls):
        return s if not copy else shallow_copy(s)
    elif isinstance(s, str):
        return cls((s,))
    elif iterate and hasattr(s, '__iter__'):
        return cls(s)
    elif s is None:
        return cls()
    else:
        return cls((s,))


def ensure_list(s, copy=False, iterate=True):
    """Given not a list, would place it into a list. If None - empty list is returned

    Parameters
    ----------
    s: list or anything
    copy: bool, optional
      If list is passed, it would generate a shallow copy of the list
    iterate: bool, optional
      If it is not a list, but something iterable (but not a str)
      iterate over it.
    """
    return ensure_iter(s, list, copy=copy, iterate=iterate)


def ensure_list_from_str(s, sep='\n'):
    """Given a multiline string convert it to a list of return None if empty

    Parameters
    ----------
    s: str or list
    """

    if not s:
        return None

    if isinstance(s, list):
        return s
    return s.split(sep)


def ensure_dict_from_str(s, **kwargs):
    """Given a multiline string with key=value items convert it to a dictionary

    Parameters
    ----------
    s: str or dict

    Returns None if input s is empty
    """

    if not s:
        return None

    if isinstance(s, dict):
        return s

    out = {}
    for value_str in ensure_list_from_str(s, **kwargs):
        if '=' not in value_str:
            raise ValueError("{} is not in key=value format".format(repr(value_str)))
        k, v = value_str.split('=', 1)
        if k in out:
            err = "key {} was already defined in {}, but new value {} was provided".format(k, out, v)
            raise ValueError(err)
        out[k] = v
    return out


def ensure_bytes(s, encoding='utf-8'):
    """Convert/encode unicode string to bytes.

    If `s` isn't a string, return it as is.

    Parameters
    ----------
    encoding: str, optional
      Encoding to use.  "utf-8" is the default
    """
    if not isinstance(s, str):
        return s
    return s.encode(encoding)


def ensure_unicode(s, encoding=None, confidence=None):
    """Convert/decode bytestring to unicode.

    If `s` isn't a bytestring, return it as is.

    Parameters
    ----------
    encoding: str, optional
      Encoding to use.  If None, "utf-8" is tried, and then if not a valid
      UTF-8, encoding will be guessed
    confidence: float, optional
      A value between 0 and 1, so if guessing of encoding is of lower than
      specified confidence, ValueError is raised
    """
    if not isinstance(s, bytes):
        return s
    if encoding is None:
        # Figure out encoding, defaulting to 'utf-8' which is our common
        # target in contemporary digital society
        try:
            return s.decode('utf-8')
        except UnicodeDecodeError as exc:
            from .dochelpers import exc_str
            lgr.debug("Failed to decode a string as utf-8: %s", exc_str(exc))
        # And now we could try to guess
        from chardet import detect
        enc = detect(s)
        denc = enc.get('encoding', None)
        if denc:
            denc_confidence = enc.get('confidence', 0)
            if confidence is not None and  denc_confidence < confidence:
                raise ValueError(
                    "Failed to auto-detect encoding with high enough "
                    "confidence. Highest confidence was %s for %s"
                    % (denc_confidence, denc)
                )
            return s.decode(denc)
        else:
            raise ValueError(
                "Could not decode value as utf-8, or to guess its encoding: %s"
                % repr(s)
            )
    else:
        return s.decode(encoding)


def ensure_bool(s):
    """Convert value into boolean following convention for strings

    to recognize on,True,yes as True, off,False,no as False
    """
    if isinstance(s, str):
        if s.isdigit():
            return bool(int(s))
        sl = s.lower()
        if sl in {'y', 'yes', 'true', 'on'}:
            return True
        elif sl in {'n', 'no', 'false', 'off'}:
            return False
        else:
            raise ValueError("Do not know how to treat %r as a boolean" % s)
    return bool(s)


def as_unicode(val, cast_types=object):
    """Given an arbitrary value, would try to obtain unicode value of it
    
    For unicode it would return original value, for python2 str or python3
    bytes it would use ensure_unicode, for None - an empty (unicode) string,
    and for any other type (see `cast_types`) - would apply the unicode 
    constructor.  If value is not an instance of `cast_types`, TypeError
    is thrown
    
    Parameters
    ----------
    cast_types: type
      Which types to cast to unicode by providing to constructor
    """
    if val is None:
        return u''
    elif isinstance(val, str):
        return val
    elif isinstance(val, unicode_srctypes):
        return ensure_unicode(val)
    elif isinstance(val, cast_types):
        return str(val)
    else:
        raise TypeError(
            "Value %r is not of any of known or provided %s types"
            % (val, cast_types))


def unique(seq, key=None, reverse=False):
    """Given a sequence return a list only with unique elements while maintaining order

    This is the fastest solution.  See
    https://www.peterbe.com/plog/uniqifiers-benchmark
    and
    http://stackoverflow.com/a/480227/1265472
    for more information.
    Enhancement -- added ability to compare for uniqueness using a key function

    Parameters
    ----------
    seq:
      Sequence to analyze
    key: callable, optional
      Function to call on each element so we could decide not on a full
      element, but on its member etc
    reverse: bool, optional
      If True, uniqueness checked in the reverse order, so that the later ones
      will take the order
    """
    seen = set()
    seen_add = seen.add

    trans = reversed if reverse else lambda x: x

    if not key:
        out = [x for x in trans(seq) if not (x in seen or seen_add(x))]
    else:
        # OPT: could be optimized, since key is called twice, but for our cases
        # should be just as fine
        out = [x for x in trans(seq) if not (key(x) in seen or seen_add(key(x)))]

    return out[::-1] if reverse else out


def all_same(items):
    """Quick check if all items are the same.

    Identical to a check like len(set(items)) == 1 but
    should be more efficient while working on generators, since would
    return False as soon as any difference detected thus possibly avoiding
    unnecessary evaluations
    """
    first = True
    first_item = None
    for item in items:
        if first:
            first = False
            first_item = item
        else:
            if item != first_item:
                return False
    # So we return False if was empty
    return not first


def map_items(func, v):
    """A helper to apply `func` to all elements (keys and values) within dict

    No type checking of values passed to func is done, so `func`
    should be resilient to values which it should not handle

    Initial usecase - apply_recursive(url_fragment, ensure_unicode)
    """
    # map all elements within item
    return v.__class__(
        item.__class__(map(func, item))
        for item in v.items()
    )


def partition(items, predicate=bool):
    """Partition `items` by `predicate`.

    Parameters
    ----------
    items : iterable
    predicate : callable
        A function that will be mapped over each element in `items`. The
        elements will partitioned based on whether the return value is false or
        true.

    Returns
    -------
    A tuple with two generators, the first for 'false' items and the second for
    'true' ones.

    Notes
    -----
    Taken from Peter Otten's snippet posted at
    https://nedbatchelder.com/blog/201306/filter_a_list_into_two_parts.html
    """
    a, b = tee((predicate(item), item) for item in items)
    return ((item for pred, item in a if not pred),
            (item for pred, item in b if pred))


def generate_chunks(container, size):
    """Given a container, generate chunks from it with size up to `size`
    """
    # There could be a "smarter" solution but I think this would suffice
    assert size > 0,  "Size should be non-0 positive"
    while container:
        yield container[:size]
        container = container[size:]


def generate_file_chunks(files, cmd=None):
    """Given a list of files, generate chunks of them to avoid exceding cmdline length

    Parameters
    ----------
    files: list of str
    cmd: str or list of str, optional
      Command to account for as well
    """
    files = ensure_list(files)
    cmd = ensure_list(cmd)

    maxl = max(map(len, files)) if files else 0
    chunk_size = max(
        1,  # should at least be 1. If blows then - not our fault
        (CMD_MAX_ARG
         - sum((len(x) + 3) for x in cmd)
         - 4  # for '--' below
         ) // (maxl + 3)  # +3 for possible quotes and a space
    )
    # TODO: additional treatment for "too many arguments"? although
    # as https://github.com/datalad/datalad/issues/1883#issuecomment
    # -436272758
    # shows there seems to be no hardcoded limit on # of arguments,
    # but may be we decide to go for smth like follow to be on safe side
    # chunk_size = min(10240 - len(cmd), chunk_size)
    file_chunks = generate_chunks(files, chunk_size)
    return file_chunks


#
# Generators helpers
#

def saved_generator(gen):
    """Given a generator returns two generators, where 2nd one just replays

    So the first one would be going through the generated items and 2nd one
    would be yielding saved items
    """
    saved = []

    def gen1():
        for x in gen:  # iterating over original generator
            saved.append(x)
            yield x

    def gen2():
        for x in saved:  # yielding saved entries
            yield x

    return gen1(), gen2()


#
# Decorators
#
def better_wraps(to_be_wrapped):
    """Decorator to replace `functools.wraps`

    This is based on `wrapt` instead of `functools` and in opposition to `wraps`
    preserves the correct signature of the decorated function.
    It is written with the intention to replace the use of `wraps` without any
    need to rewrite the actual decorators.
    """

    @wrapt.decorator(adapter=to_be_wrapped)
    def intermediator(to_be_wrapper, instance, args, kwargs):
        return to_be_wrapper(*args, **kwargs)

    return intermediator


# Borrowed from pandas
# Copyright: 2011-2014, Lambda Foundry, Inc. and PyData Development Team
# License: BSD-3
def optional_args(decorator):
    """allows a decorator to take optional positional and keyword arguments.
        Assumes that taking a single, callable, positional argument means that
        it is decorating a function, i.e. something like this::

            @my_decorator
            def function(): pass

        Calls decorator with decorator(f, `*args`, `**kwargs`)"""

    @better_wraps(decorator)
    def wrapper(*args, **kwargs):
        def dec(f):
            return decorator(f, *args, **kwargs)

        is_decorating = not kwargs and len(args) == 1 and isinstance(args[0], Callable)
        if is_decorating:
            f = args[0]
            args = []
            return dec(f)
        else:
            return dec

    return wrapper


# TODO: just provide decorators for tempfile.mk* functions. This is ugly!
def get_tempfile_kwargs(tkwargs=None, prefix="", wrapped=None):
    """Updates kwargs to be passed to tempfile. calls depending on env vars
    """
    if tkwargs is None:
        tkwargs_ = {}
    else:
        # operate on a copy of tkwargs to avoid any side-effects
        tkwargs_ = tkwargs.copy()

    # TODO: don't remember why I had this one originally
    # if len(targs)<2 and \
    if 'prefix' not in tkwargs_:
        tkwargs_['prefix'] = '_'.join(
            ['datalad_temp'] +
            ([prefix] if prefix else []) +
            ([''] if (on_windows or not wrapped) else [wrapped.__name__]))

    directory = os.environ.get('DATALAD_TESTS_TEMP_DIR')
    if directory and 'dir' not in tkwargs_:
        tkwargs_['dir'] = directory

    return tkwargs_


@optional_args
def line_profile(func):
    """Q&D helper to line profile the function and spit out stats
    """
    import line_profiler
    prof = line_profiler.LineProfiler()

    @wraps(func)
    def newfunc(*args, **kwargs):
        try:
            pfunc = prof(func)
            return pfunc(*args, **kwargs)
        finally:
            prof.print_stats()
    return newfunc


# Borrowed from duecredit to wrap duecredit-handling to guarantee failsafe
def never_fail(f):
    """Assure that function never fails -- all exceptions are caught

    Returns `None` if function fails internally.
    """
    @wraps(f)
    def wrapped_func(*args, **kwargs):
        try:
            return f(*args, **kwargs)
        except Exception as e:
            lgr.warning(
                "DataLad internal failure while running %s: %r. "
                "Please report at https://github.com/datalad/datalad/issues"
                % (f, e)
            )

    if os.environ.get('DATALAD_ALLOW_FAIL', False):
        return f
    else:
        return wrapped_func


#
# Context Managers
#


@contextmanager
def nothing_cm():
    """Just a dummy cm to programmically switch context managers"""
    yield


@contextmanager
def swallow_outputs():
    """Context manager to help consuming both stdout and stderr, and print()

    stdout is available as cm.out and stderr as cm.err whenever cm is the
    yielded context manager.
    Internally uses temporary files to guarantee absent side-effects of swallowing
    into StringIO which lacks .fileno.

    print mocking is necessary for some uses where sys.stdout was already bound
    to original sys.stdout, thus mocking it later had no effect. Overriding
    print function had desired effect
    """

    class StringIOAdapter(object):
        """Little adapter to help getting out/err values
        """
        def __init__(self):
            kw = get_tempfile_kwargs({}, prefix="outputs")

            self._out = open(tempfile.mktemp(**kw), 'w')
            self._err = open(tempfile.mktemp(**kw), 'w')

        def _read(self, h):
            with open(h.name) as f:
                return f.read()

        @property
        def out(self):
            if not self._out.closed:
                self._out.flush()
            return self._read(self._out)

        @property
        def err(self):
            if not self._err.closed:
                self._err.flush()
            return self._read(self._err)

        @property
        def handles(self):
            return self._out, self._err

        def cleanup(self):
            self._out.close()
            self._err.close()
            out_name = self._out.name
            err_name = self._err.name
            del self._out
            del self._err
            gc.collect()
            rmtemp(out_name)
            rmtemp(err_name)

    def fake_print(*args, **kwargs):
        sep = kwargs.pop('sep', ' ')
        end = kwargs.pop('end', '\n')
        file = kwargs.pop('file', sys.stdout)

        if file in (oldout, olderr, sys.stdout, sys.stderr):
            # we mock
            try:
                sys.stdout.write(sep.join(args) + end)
            except UnicodeEncodeError as exc:
                lgr.error(
                    "Failed to write to mocked stdout, got %s, continue as it "
                    "didn't happen",  exc)
        else:
            # must be some other file one -- leave it alone
            oldprint(*args, sep=sep, end=end, file=file)

    from .ui import ui
    # preserve -- they could have been mocked already
    oldprint = getattr(builtins, 'print')
    oldout, olderr = sys.stdout, sys.stderr
    olduiout = ui.out
    adapter = StringIOAdapter()

    try:
        sys.stdout, sys.stderr = adapter.handles
        ui.out = adapter.handles[0]
        setattr(builtins, 'print', fake_print)

        yield adapter
    finally:
        sys.stdout, sys.stderr, ui.out = oldout, olderr, olduiout
        setattr(builtins, 'print',  oldprint)
        adapter.cleanup()


@contextmanager
def swallow_logs(new_level=None, file_=None, name='datalad'):
    """Context manager to consume all logs.

    """
    lgr = logging.getLogger(name)

    # Keep old settings
    old_level = lgr.level
    old_handlers = lgr.handlers

    # Let's log everything into a string
    # TODO: generalize with the one for swallow_outputs
    class StringIOAdapter(object):
        """Little adapter to help getting out values

        And to stay consistent with how swallow_outputs behaves
        """
        def __init__(self):
            if file_ is None:
                kw = get_tempfile_kwargs({}, prefix="logs")
                out_file = tempfile.mktemp(**kw)
            else:
                out_file = file_
            # PY3 requires clearly one or another.  race condition possible
            self._out = open(out_file, 'a')
            self._final_out = None

        def _read(self, h):
            with open(h.name) as f:
                return f.read()

        @property
        def out(self):
            if self._final_out is not None:
                # we closed and cleaned up already
                return self._final_out
            else:
                self._out.flush()
                return self._read(self._out)

        @property
        def lines(self):
            return self.out.split('\n')

        @property
        def handle(self):
            return self._out

        def cleanup(self):
            # store for access while object exists
            self._final_out = self.out
            self._out.close()
            out_name = self._out.name
            del self._out
            gc.collect()
            if not file_:
                rmtemp(out_name)

        def assert_logged(self, msg=None, level=None, regex=True, **kwargs):
            """Provide assertion on whether a msg was logged at a given level

            If neither `msg` nor `level` provided, checks if anything was logged
            at all.

            Parameters
            ----------
            msg: str, optional
              Message (as a regular expression, if `regex`) to be searched.
              If no msg provided, checks if anything was logged at a given level.
            level: str, optional
              String representing the level to be logged
            regex: bool, optional
              If False, regular `assert_in` is used
            **kwargs: str, optional
              Passed to `assert_re_in` or `assert_in`
            """
            from datalad.tests.utils import assert_re_in
            from datalad.tests.utils import assert_in

            if regex:
                match = r'\[%s\] ' % level if level else r"\[\S+\] "
            else:
                match = '[%s] ' % level if level else ''

            if msg:
                match += msg

            if match:
                (assert_re_in if regex else assert_in)(match, self.out, **kwargs)
            else:
                assert not kwargs, "no kwargs to be passed anywhere"
                assert self.out, "Nothing was logged!?"

    adapter = StringIOAdapter()
    # TODO: it does store messages but without any formatting, i.e. even without
    # date/time prefix etc.  IMHO it should preserve formatting in case if file_ is
    # set
    swallow_handler = logging.StreamHandler(adapter.handle)
    # we want to log levelname so we could test against it
    swallow_handler.setFormatter(
        logging.Formatter('[%(levelname)s] %(message)s'))
    # Inherit filters
    from datalad.log import ProgressHandler
    swallow_handler.filters = sum([h.filters for h in old_handlers
                                   if not isinstance(h, ProgressHandler)],
                                  [])
    lgr.handlers = [swallow_handler]
    if old_level < logging.DEBUG:  # so if HEAVYDEBUG etc -- show them!
        lgr.handlers += old_handlers

    if isinstance(new_level, str):
        new_level = getattr(logging, new_level)

    if new_level is not None:
        lgr.setLevel(new_level)

    try:
        yield adapter
        # TODO: if file_ and there was an exception -- most probably worth logging it?
        # although ideally it should be the next log outside added to that file_ ... oh well
    finally:
        lgr.handlers = old_handlers
        lgr.setLevel(old_level)
        adapter.cleanup()


# TODO: May be melt in with swallow_logs at some point:
@contextmanager
def disable_logger(logger=None):
    """context manager to temporarily disable logging

    This is to provide one of swallow_logs' purposes without unnecessarily
    creating temp files (see gh-1865)

    Parameters
    ----------
    logger: Logger
        Logger whose handlers will be ordered to not log anything.
        Default: datalad's topmost Logger ('datalad')
    """

    class NullFilter(logging.Filter):
        """Filter class to reject all records
        """
        def filter(self, record):
            return 0

    if logger is None:
        # default: all of datalad's logging:
        logger = logging.getLogger('datalad')

    filter_ = NullFilter(logger.name)
    [h.addFilter(filter_) for h in logger.handlers]

    try:
        yield logger
    finally:
        [h.removeFilter(filter_) for h in logger.handlers]


#
# Additional handlers
#
_sys_excepthook = sys.excepthook  # Just in case we ever need original one


def setup_exceptionhook(ipython=False):
    """Overloads default sys.excepthook with our exceptionhook handler.

       If interactive, our exceptionhook handler will invoke
       pdb.post_mortem; if not interactive, then invokes default handler.
    """

    def _datalad_pdb_excepthook(type, value, tb):
        import traceback
        traceback.print_exception(type, value, tb)
        print()
        if is_interactive():
            import pdb
            pdb.post_mortem(tb)

    if ipython:
        from IPython.core import ultratb
        sys.excepthook = ultratb.FormattedTB(mode='Verbose',
                                             # color_scheme='Linux',
                                             call_pdb=is_interactive())
    else:
        sys.excepthook = _datalad_pdb_excepthook


def ensure_dir(*args):
    """Make sure directory exists.

    Joins the list of arguments to an os-specific path to the desired
    directory and creates it, if it not exists yet.
    """
    dirname = opj(*args)
    if not exists(dirname):
        os.makedirs(dirname)
    return dirname


def updated(d, update):
    """Return a copy of the input with the 'update'

    Primarily for updating dictionaries
    """
    d = d.copy()
    d.update(update)
    return d


_pwd_mode = None


def _switch_to_getcwd(msg, *args):
    global _pwd_mode
    _pwd_mode = 'cwd'
    lgr.warning(
        msg + ". From now on will be returning os.getcwd(). Directory"
               " symlinks in the paths will be resolved",
        *args
    )
    # TODO:  we might want to mitigate by going through all flywheighted
    # repos and tuning up their .paths to be resolved?


def getpwd():
    """Try to return a CWD without dereferencing possible symlinks

    This function will try to use PWD environment variable to provide a current
    working directory, possibly with some directories along the path being
    symlinks to other directories.  Unfortunately, PWD is used/set only by the
    shell and such functions as `os.chdir` and `os.getcwd` nohow use or modify
    it, thus `os.getcwd()` returns path with links dereferenced.

    While returning current working directory based on PWD env variable we
    verify that the directory is the same as `os.getcwd()` after resolving all
    symlinks.  If that verification fails, we fall back to always use
    `os.getcwd()`.

    Initial decision to either use PWD env variable or os.getcwd() is done upon
    the first call of this function.
    """
    global _pwd_mode
    if _pwd_mode is None:
        # we need to decide!
        try:
            pwd = os.environ['PWD']
            if on_windows and pwd and pwd.startswith('/'):
                # It should be a path from MSYS.
                # - it might start with a drive letter or not
                # - it seems to be "illegal" to have a single letter directories
                #   under / path, i.e. if created - they aren't found
                # - 'ln -s' does not fail to create a "symlink" but it just
                # copies!
                #   so we are not likely to need original PWD purpose on
                # those systems
                # Verdict:
                _pwd_mode = 'cwd'
            else:
                _pwd_mode = 'PWD'
        except KeyError:
            _pwd_mode = 'cwd'

    if _pwd_mode == 'cwd':
        return os.getcwd()
    elif _pwd_mode == 'PWD':
        try:
            cwd = os.getcwd()
        except OSError as exc:
            if "o such file" in str(exc):
                # directory was removed but we promised to be robust and
                # still report the path we might know since we are still in PWD
                # mode
                cwd = None
            else:
                raise
        try:
            pwd = os.environ['PWD']
            pwd_real = op.realpath(pwd)
            # This logic would fail to catch the case where chdir did happen
            # to the directory where current PWD is pointing to, e.g.
            # $> ls -ld $PWD
            # lrwxrwxrwx 1 yoh yoh 5 Oct 11 13:27 /home/yoh/.tmp/tmp -> /tmp//
            # hopa:~/.tmp/tmp
            # $> python -c 'import os; os.chdir("/tmp"); from datalad.utils import getpwd; print(getpwd(), os.getcwd())'
            # ('/home/yoh/.tmp/tmp', '/tmp')
            # but I guess that should not be too harmful
            if cwd is not None and pwd_real != cwd:
                _switch_to_getcwd(
                    "realpath of PWD=%s is %s whenever os.getcwd()=%s",
                    pwd, pwd_real, cwd
                )
                return cwd
            return pwd
        except KeyError:
            _switch_to_getcwd("PWD env variable is no longer available")
            return cwd  # Must not happen, but may be someone
                        # evil purges PWD from environ?
    else:
        raise RuntimeError(
            "Must have not got here. "
            "pwd_mode must be either cwd or PWD. And it is now %r" % (_pwd_mode,)
        )


class chpwd(object):
    """Wrapper around os.chdir which also adjusts environ['PWD']

    The reason is that otherwise PWD is simply inherited from the shell
    and we have no ability to assess directory path without dereferencing
    symlinks.

    If used as a context manager it allows to temporarily change directory
    to the given path
    """
    def __init__(self, path, mkdir=False, logsuffix=''):

        if path:
            # PY35 has no auto-conversion of Path to str
            path = str(path)
            pwd = getpwd()
            self._prev_pwd = pwd
        else:
            self._prev_pwd = None
            return

        if not isabs(path):
            path = normpath(opj(pwd, path))
        if not os.path.exists(path) and mkdir:
            self._mkdir = True
            os.mkdir(path)
        else:
            self._mkdir = False
        lgr.debug("chdir %r -> %r %s", self._prev_pwd, path, logsuffix)
        os.chdir(path)  # for grep people -- ok, to chdir here!
        os.environ['PWD'] = path

    def __enter__(self):
        # nothing more to do really, chdir was in the constructor
        pass

    def __exit__(self, exc_type, exc_val, exc_tb):
        if self._prev_pwd:
            # Need to use self.__class__ so this instance, if the entire
            # thing mocked during the test, still would use correct chpwd
            self.__class__(self._prev_pwd, logsuffix="(coming back)")


def dlabspath(path, norm=False):
    """Symlinks-in-the-cwd aware abspath

    os.path.abspath relies on os.getcwd() which would not know about symlinks
    in the path

    TODO: we might want to norm=True by default to match behavior of
    os .path.abspath?
    """
    if not isabs(path):
        # if not absolute -- relative to pwd
        path = opj(getpwd(), path)
    return normpath(path) if norm else path


def with_pathsep(path):
    """Little helper to guarantee that path ends with /"""
    return path + sep if not path.endswith(sep) else path


def get_path_prefix(path, pwd=None):
    """Get path prefix (for current directory)

    Returns relative path to the topdir, if we are under topdir, and if not
    absolute path to topdir.  If `pwd` is not specified - current directory
    assumed
    """
    pwd = pwd or getpwd()
    path = dlabspath(path)
    path_ = with_pathsep(path)
    pwd_ = with_pathsep(pwd)
    common = commonprefix((path_, pwd_))
    if common.endswith(sep) and common in {path_, pwd_}:
        # we are in subdir or above the path = use relative path
        location_prefix = relpath(path, pwd)
        # if benign "here" - cut off
        if location_prefix in (curdir, curdir + sep):
            location_prefix = ''
        return location_prefix
    else:
        # just return absolute path
        return path


def _get_normalized_paths(path, prefix):
    if isabs(path) != isabs(prefix):
        raise ValueError("Both paths must either be absolute or relative. "
                         "Got %r and %r" % (path, prefix))
    path = with_pathsep(path)
    prefix = with_pathsep(prefix)
    return path, prefix


def path_startswith(path, prefix):
    """Return True if path starts with prefix path

    Parameters
    ----------
    path: str
    prefix: str
    """
    path, prefix = _get_normalized_paths(path, prefix)
    return path.startswith(prefix)


def path_is_subpath(path, prefix):
    """Return True if path is a subpath of prefix

    It will return False if path == prefix.

    Parameters
    ----------
    path: str
    prefix: str
    """
    path, prefix = _get_normalized_paths(path, prefix)
    return (len(prefix) < len(path)) and path.startswith(prefix)


def knows_annex(path):
    """Returns whether at a given path there is information about an annex

    It is just a thin wrapper around GitRepo.is_with_annex() classmethod
    which also checks for `path` to exist first.

    This includes actually present annexes, but also uninitialized ones, or
    even the presence of a remote annex branch.
    """
    from os.path import exists
    if not exists(path):
        lgr.debug("No annex: test path {0} doesn't exist".format(path))
        return False
    from datalad.support.gitrepo import GitRepo
    return GitRepo(path, init=False, create=False).is_with_annex()


@contextmanager
def make_tempfile(content=None, wrapped=None, **tkwargs):
    """Helper class to provide a temporary file name and remove it at the end (context manager)

    Parameters
    ----------
    mkdir : bool, optional (default: False)
        If True, temporary directory created using tempfile.mkdtemp()
    content : str or bytes, optional
        Content to be stored in the file created
    wrapped : function, optional
        If set, function name used to prefix temporary file name
    `**tkwargs`:
        All other arguments are passed into the call to tempfile.mk{,d}temp(),
        and resultant temporary filename is passed as the first argument into
        the function t.  If no 'prefix' argument is provided, it will be
        constructed using module and function names ('.' replaced with
        '_').

    To change the used directory without providing keyword argument 'dir' set
    DATALAD_TESTS_TEMP_DIR.

    Examples
    --------
        >>> from os.path import exists
        >>> from datalad.utils import make_tempfile
        >>> with make_tempfile() as fname:
        ...    k = open(fname, 'w').write('silly test')
        >>> assert not exists(fname)  # was removed

        >>> with make_tempfile(content="blah") as fname:
        ...    assert open(fname).read() == "blah"
    """

    if tkwargs.get('mkdir', None) and content is not None:
        raise ValueError("mkdir=True while providing content makes no sense")

    tkwargs_ = get_tempfile_kwargs(tkwargs, wrapped=wrapped)

    # if DATALAD_TESTS_TEMP_DIR is set, use that as directory,
    # let mktemp handle it otherwise. However, an explicitly provided
    # dir=... will override this.
    mkdir = tkwargs_.pop('mkdir', False)

    filename = {False: tempfile.mktemp,
                True: tempfile.mkdtemp}[mkdir](**tkwargs_)
    filename = realpath(filename)

    if content:
        with open(filename, 'w' + ('b' if isinstance(content, bytes) else '')) as f:
            f.write(content)

    if __debug__:
        # TODO mkdir
        lgr.debug('Created temporary thing named %s"' % filename)
    try:
        yield filename
    finally:
        # glob here for all files with the same name (-suffix)
        # would be useful whenever we requested .img filename,
        # and function creates .hdr as well
        lsuffix = len(tkwargs_.get('suffix', ''))
        filename_ = lsuffix and filename[:-lsuffix] or filename
        filenames = glob.glob(filename_ + '*')
        if len(filename_) < 3 or len(filenames) > 5:
            # For paranoid yoh who stepped into this already ones ;-)
            lgr.warning("It is unlikely that it was intended to remove all"
                        " files matching %r. Skipping" % filename_)
            return
        for f in filenames:
            try:
                rmtemp(f)
            except OSError:  # pragma: no cover
                pass


def _path_(*p):
    """Given a path in POSIX" notation, regenerate one in native to the env one"""
    if on_windows:
        return opj(*map(lambda x: opj(*x.split('/')), p))
    else:
        # Assume that all others as POSIX compliant so nothing to be done
        return opj(*p)


def get_timestamp_suffix(time_=None, prefix='-'):
    """Return a time stamp (full date and time up to second)

    primarily to be used for generation of log files names
    """
    args = []
    if time_ is not None:
        if isinstance(time_, int):
            time_ = time.gmtime(time_)
        args.append(time_)
    return time.strftime(prefix + TIMESTAMP_FMT, *args)


def get_logfilename(dspath, cmd='datalad'):
    """Return a filename to use for logging under a dataset/repository

    directory would be created if doesn't exist, but dspath must exist
    and be a directory
    """
    assert(exists(dspath))
    assert(isdir(dspath))
    ds_logdir = ensure_dir(dspath, '.git', 'datalad', 'logs')  # TODO: use WEB_META_LOG whenever #789 merged
    return opj(ds_logdir, 'crawl-%s.log' % get_timestamp_suffix())


def get_trace(edges, start, end, trace=None):
    """Return the trace/path to reach a node in a tree.

    Parameters
    ----------
    edges : sequence(2-tuple)
      The tree given by a sequence of edges (parent, child) tuples. The
      nodes can be identified by any value and data type that supports
      the '==' operation.
    start :
      Identifier of the start node. Must be present as a value in the parent
      location of an edge tuple in order to be found.
    end :
      Identifier of the target/end node. Must be present as a value in the child
      location of an edge tuple in order to be found.
    trace : list
      Mostly useful for recursive calls, and used internally.

    Returns
    -------
    None or list
      Returns a list with the trace to the target (the starts and the target
      are not included in the trace, hence if start and end are directly connected
      an empty list is returned), or None when no trace to the target can be found,
      or start and end are identical.
    """
    # the term trace is used to avoid confusion with a path in the sense
    # of a filesystem path, but the analogy fits and nodes can be paths
    if trace is None:
        trace = []
    if not edges:
        raise ValueError("no edges given")
    for cand in edges:
        cand_super, cand_sub = cand
        if cand_sub in trace:
            # only DAGs, skip any cyclic traces
            continue
        if trace and cand_super != trace[-1]:
            # only consider edges that lead off the end of the trace
            continue
        if not trace and cand_super != start:
            # we got nothing yet, and this edges is not matching the start
            continue
        if cand_sub == end:
            return trace
        # dive into potential subnodes
        cand_trace = get_trace(
            edges,
            start,
            end,
            trace + [cand_sub])
        if cand_trace:
            return cand_trace
    return None


def get_dataset_root(path):
    """Return the root of an existent dataset containing a given path

    The root path is returned in the same absolute or relative form
    as the input argument. If no associated dataset exists, or the
    input path doesn't exist, None is returned.

    If `path` is a symlink or something other than a directory, its
    the root dataset containing its parent directory will be reported.
    If none can be found, at a symlink at `path` is pointing to a
    dataset, `path` itself will be reported as the root.
    """
    suffix = '.git'
    altered = None
    if op.islink(path) or not op.isdir(path):
        altered = path
        path = op.dirname(path)
    apath = op.abspath(path)
    # while we can still go up
    while op.split(apath)[1]:
        if op.exists(op.join(path, suffix)):
            return path
        # new test path in the format we got it
        path = op.normpath(op.join(path, os.pardir))
        # no luck, next round
        apath = op.abspath(path)
    # if we applied dirname() at the top, we give it another go with
    # the actual path, if it was itself a symlink, it could be the
    # top-level dataset itself
    if altered and op.exists(op.join(altered, suffix)):
        return altered

    return None


# ATM used in datalad_crawler extension, so do not remove yet
def try_multiple(ntrials, exception, base, f, *args, **kwargs):
    """Call f multiple times making exponentially growing delay between the calls"""
    from .dochelpers import exc_str
    for trial in range(1, ntrials+1):
        try:
            return f(*args, **kwargs)
        except exception as exc:
            if trial == ntrials:
                raise  # just reraise on the last trial
            t = base ** trial
            lgr.warning("Caught %s on trial #%d. Sleeping %f and retrying",
                        exc_str(exc), trial, t)
            sleep(t)


@optional_args
def try_multiple_dec(f, ntrials=None, duration=0.1, exceptions=None, increment_type=None):
    """Decorator to try function multiple times.

    Main purpose is to decorate functions dealing with removal of files/directories
    and which might need a few seconds to work correctly on Windows which takes
    its time to release files/directories.

    Parameters
    ----------
    ntrials: int, optional
    duration: float, optional
      Seconds to sleep before retrying.
    increment_type: {None, 'exponential'}
      Note that if it is exponential, duration should typically be > 1.0
      so it grows with higher power

    """
    from .dochelpers import exc_str
    if not exceptions:
        exceptions = (OSError, WindowsError, PermissionError) \
            if on_windows else OSError
    if not ntrials:
        # Life goes fast on proper systems, no need to delay it much
        ntrials = 50 if on_windows else 3

    assert increment_type in {None, 'exponential'}

    @wraps(f)
    def wrapped(*args, **kwargs):
        t = duration
        for trial in range(ntrials):
            try:
                return f(*args, **kwargs)
            except exceptions as exc:
                if increment_type == 'exponential':
                    t = duration ** (trial + 1)
                lgr.log(
                    5,
                    "Caught %s on trial #%d. Sleeping %f and retrying",
                    exc_str(exc), trial, t)
                if trial < ntrials - 1:
                    sleep(t)
                else:
                    raise

    return wrapped


@try_multiple_dec
def unlink(f):
    """'Robust' unlink.  Would try multiple times

    On windows boxes there is evidence for a latency of more than a second
    until a file is considered no longer "in-use".
    WindowsError is not known on Linux, and if IOError or any other
    exception
    is thrown then if except statement has WindowsError in it -- NameError
    also see gh-2533
    """
    # Check for open files
    assert_no_open_files(f)
    return os.unlink(f)


@try_multiple_dec
def _rmtree(*args, **kwargs):
    """Just a helper to decorate shutil.rmtree.

    rmtree defined above does more and ideally should not itself be decorated
    since a recursive definition and does checks for open files inside etc -
    might be too runtime expensive
    """
    return shutil.rmtree(*args, **kwargs)


def slash_join(base, extension):
    """Join two strings with a '/', avoiding duplicate slashes

    If any of the strings is None the other is returned as is.
    """
    if extension is None:
        return base
    if base is None:
        return extension
    return '/'.join(
        (base.rstrip('/'),
         extension.lstrip('/')))


def safe_print(s):
    """Print with protection against UTF-8 encoding errors"""
    # A little bit of dance to be able to test this code
    print_f = getattr(builtins, "print")
    try:
        print_f(s)
    except UnicodeEncodeError:
        # failed to encode so let's do encoding while ignoring errors
        # to print at least something
        # explicit `or ascii` since somehow on buildbot it seemed to return None
        s = s.encode(getattr(sys.stdout, 'encoding', 'ascii') or 'ascii', errors='ignore') \
            if hasattr(s, 'encode') else s
        print_f(s.decode())

#
# IO Helpers
#

def open_r_encdetect(fname, readahead=1000):
    """Return a file object in read mode with auto-detected encoding

    This is helpful when dealing with files of unknown encoding.

    Parameters
    ----------
    readahead: int, optional
      How many bytes to read for guessing the encoding type.  If
      negative - full file will be read
    """
    from chardet import detect
    import io
    # read some bytes from the file
    with open(fname, 'rb') as f:
        head = f.read(readahead)
    enc = detect(head)
    denc = enc.get('encoding', None)
    lgr.debug("Auto-detected encoding %s for file %s (confidence: %s)",
              denc,
              fname,
              enc.get('confidence', 'unknown'))
    return io.open(fname, encoding=denc)


def read_csv_lines(fname, dialect=None, readahead=16384, **kwargs):
    """A generator of dict records from a CSV/TSV

    Automatically guesses the encoding for each record to convert to UTF-8

    Parameters
    ----------
    fname: str
      Filename
    dialect: str, optional
      Dialect to specify to csv.reader. If not specified -- guessed from
      the file, if fails to guess, "excel-tab" is assumed
    readahead: int, optional
      How many bytes to read from the file to guess the type
    **kwargs
      Passed to `csv.reader`
    """
    import csv
    if dialect is None:
        with open(fname) as tsvfile:
            # add robustness, use a sniffer
            try:
                dialect = csv.Sniffer().sniff(tsvfile.read(readahead))
            except Exception as exc:
                from .dochelpers import exc_str
                lgr.warning(
                    'Could not determine file-format, assuming TSV: %s',
                    exc_str(exc)
                )
                dialect = 'excel-tab'

    kw = dict(encoding='utf-8')
    with open(fname, 'r', **kw) as tsvfile:
        # csv.py doesn't do Unicode; encode temporarily as UTF-8:
        csv_reader = csv.reader(
            tsvfile,
            dialect=dialect,
            **kwargs
        )
        header = None
        for row in csv_reader:
            # decode UTF-8 back to Unicode, cell by cell:
            row_unicode = map(ensure_unicode, row)
            if header is None:
                header = list(row_unicode)
            else:
                yield dict(zip(header, row_unicode))


def import_modules(modnames, pkg, msg="Failed to import {module}", log=lgr.debug):
    """Helper to import a list of modules without failing if N/A

    Parameters
    ----------
    modnames: list of str
      List of module names to import
    pkg: str
      Package under which to import
    msg: str, optional
      Message template for .format() to log at DEBUG level if import fails.
      Keys {module} and {package} will be provided and ': {exception}' appended
    log: callable, optional
      Logger call to use for logging messages
    """
    from importlib import import_module
    _globals = globals()
    mods_loaded = []
    if pkg and not pkg in sys.modules:
        # with python 3.5.1 (ok with 3.5.5) somehow kept running into
        #  Failed to import dlsub1: Parent module 'dltestm1' not loaded
        # while running the test. Preloading pkg resolved the issue
        import_module(pkg)
    for modname in modnames:
        try:
            _globals[modname] = mod = import_module(
                '.{}'.format(modname),
                pkg)
            mods_loaded.append(mod)
        except Exception as exc:
            from datalad.dochelpers import exc_str
            log((msg + ': {exception}').format(
                module=modname, package=pkg, exception=exc_str(exc)))
    return mods_loaded


def import_module_from_file(modpath, pkg=None, log=lgr.debug):
    """Import provided module given a path

    TODO:
    - RF/make use of it in pipeline.py which has similar logic
    - join with import_modules above?

    Parameters
    ----------
    pkg: module, optional
       If provided, and modpath is under pkg.__path__, relative import will be
       used
    """
    assert(modpath.endswith('.py'))  # for now just for .py files

    log("Importing %s" % modpath)

    modname = basename(modpath)[:-3]
    relmodpath = None
    if pkg:
        for pkgpath in pkg.__path__:
            if path_is_subpath(modpath, pkgpath):
                # for now relying on having .py extension -- assertion above
                relmodpath = '.' + relpath(modpath[:-3], pkgpath).replace(sep, '.')
                break

    try:
        if relmodpath:
            from importlib import import_module
            mod = import_module(relmodpath, pkg.__name__)
        else:
            dirname_ = dirname(modpath)
            try:
                sys.path.insert(0, dirname_)
                mod = __import__(modname, level=0)
            finally:
                if dirname_ in sys.path:
                    sys.path.pop(sys.path.index(dirname_))
                else:
                    log("Expected path %s to be within sys.path, but it was gone!" % dirname_)
    except Exception as e:
        from datalad.dochelpers import exc_str
        raise RuntimeError(
            "Failed to import module from %s: %s" % (modpath, exc_str(e)))

    return mod


def get_encoding_info():
    """Return a dictionary with various encoding/locale information"""
    import sys, locale
    from collections import OrderedDict
    return OrderedDict([
        ('default', sys.getdefaultencoding()),
        ('filesystem', sys.getfilesystemencoding()),
        ('locale.prefered', locale.getpreferredencoding()),
    ])


def get_envvars_info():
    from collections import OrderedDict
    envs = []
    for var, val in os.environ.items():
        if (
                var.startswith('PYTHON') or
                var.startswith('LC_') or
                var.startswith('GIT_') or
                var in ('LANG', 'LANGUAGE', 'PATH')
        ):
            envs.append((var, val))
    return OrderedDict(envs)


# This class is modified from Snakemake (v5.1.4)
class SequenceFormatter(string.Formatter):
    """string.Formatter subclass with special behavior for sequences.

    This class delegates formatting of individual elements to another
    formatter object. Non-list objects are formatted by calling the
    delegate formatter's "format_field" method. List-like objects
    (list, tuple, set, frozenset) are formatted by formatting each
    element of the list according to the specified format spec using
    the delegate formatter and then joining the resulting strings with
    a separator (space by default).
    """

    def __init__(self, separator=" ", element_formatter=string.Formatter(),
                 *args, **kwargs):
        self.separator = separator
        self.element_formatter = element_formatter

    def format_element(self, elem, format_spec):
        """Format a single element

        For sequences, this is called once for each element in a
        sequence. For anything else, it is called on the entire
        object. It is intended to be overridden in subclases.
        """
        return self.element_formatter.format_field(elem, format_spec)

    def format_field(self, value, format_spec):
        if isinstance(value, (list, tuple, set, frozenset)):
            return self.separator.join(self.format_element(v, format_spec)
                                       for v in value)
        else:
            return self.format_element(value, format_spec)


# TODO: eventually we might want to make use of attr module
class File(object):
    """Helper for a file entry in the create_tree/@with_tree

    It allows to define additional settings for entries
    """
    def __init__(self, name, executable=False):
        """

        Parameters
        ----------
        name : str
          Name of the file
        executable: bool, optional
          Make it executable
        """
        self.name = name
        self.executable = executable

    def __str__(self):
        return self.name


def create_tree_archive(path, name, load, overwrite=False, archives_leading_dir=True):
    """Given an archive `name`, create under `path` with specified `load` tree
    """
    from datalad.support.archives import compress_files
    dirname = file_basename(name)
    full_dirname = op.join(path, dirname)
    os.makedirs(full_dirname)
    create_tree(full_dirname, load, archives_leading_dir=archives_leading_dir)
    # create archive
    if archives_leading_dir:
        compress_files([dirname], name, path=path, overwrite=overwrite)
    else:
        compress_files(list(map(op.basename, glob.glob(opj(full_dirname, '*')))),
                       opj(op.pardir, name),
                       path=op.join(path, dirname),
                       overwrite=overwrite)
    # remove original tree
    rmtree(full_dirname)


def create_tree(path, tree, archives_leading_dir=True, remove_existing=False):
    """Given a list of tuples (name, load) create such a tree

    if load is a tuple itself -- that would create either a subtree or an archive
    with that content and place it into the tree if name ends with .tar.gz
    """
    lgr.log(5, "Creating a tree under %s", path)
    if not op.exists(path):
        os.makedirs(path)

    if isinstance(tree, dict):
        tree = tree.items()

    for file_, load in tree:
        if isinstance(file_, File):
            executable = file_.executable
            name = file_.name
        else:
            executable = False
            name = file_
        full_name = op.join(path, name)
        if remove_existing and op.lexists(full_name):
            rmtree(full_name, chmod_files=True)
        if isinstance(load, (tuple, list, dict)):
            if name.endswith('.tar.gz') or name.endswith('.tar') or name.endswith('.zip'):
                create_tree_archive(
                    path, name, load,
                    archives_leading_dir=archives_leading_dir)
            else:
                create_tree(
                    full_name, load,
                    archives_leading_dir=archives_leading_dir,
                    remove_existing=remove_existing)
        else:
            open_func = open
            if full_name.endswith('.gz'):
                open_func = gzip.open
            with open_func(full_name, "wb") as f:
                f.write(ensure_bytes(load, 'utf-8'))
        if executable:
            os.chmod(full_name, os.stat(full_name).st_mode | stat.S_IEXEC)


def get_suggestions_msg(values, known, sep="\n        "):
    """Return a formatted string with suggestions for values given the known ones
    """
    import difflib
    suggestions = []
    for value in ensure_list(values):  # might not want to do it if we change presentation below
        suggestions += difflib.get_close_matches(value, known)
    suggestions = unique(suggestions)
    msg = "Did you mean any of these?"
    if suggestions:
        if '\n' in sep:
            # if separator includes new line - we add entire separator right away
            msg += sep
        else:
            msg += ' '
        return msg + "%s\n" % sep.join(suggestions)
    return ''


def bytes2human(n, format='%(value).1f %(symbol)sB'):
    """
    Convert n bytes into a human readable string based on format.
    symbols can be either "customary", "customary_ext", "iec" or "iec_ext",
    see: http://goo.gl/kTQMs

      >>> from datalad.utils import bytes2human
      >>> bytes2human(1)
      '1.0 B'
      >>> bytes2human(1024)
      '1.0 KB'
      >>> bytes2human(1048576)
      '1.0 MB'
      >>> bytes2human(1099511627776127398123789121)
      '909.5 YB'

      >>> bytes2human(10000, "%(value).1f %(symbol)s/sec")
      '9.8 K/sec'

      >>> # precision can be adjusted by playing with %f operator
      >>> bytes2human(10000, format="%(value).5f %(symbol)s")
      '9.76562 K'

    Taken from: http://goo.gl/kTQMs and subsequently simplified
    Original Author: Giampaolo Rodola' <g.rodola [AT] gmail [DOT] com>
    License: MIT
    """
    n = int(n)
    if n < 0:
        raise ValueError("n < 0")
    symbols = ('', 'K', 'M', 'G', 'T', 'P', 'E', 'Z', 'Y')
    prefix = {}
    for i, s in enumerate(symbols[1:]):
        prefix[s] = 1 << (i + 1) * 10
    for symbol in reversed(symbols[1:]):
        if n >= prefix[symbol]:
            value = float(n) / prefix[symbol]
            return format % locals()
    return format % dict(symbol=symbols[0], value=n)


def quote_cmdlinearg(arg):
    """Perform platform-appropriate argument quoting"""
    # https://stackoverflow.com/a/15262019
    return '"{}"'.format(
        arg.replace('"', '""')
    ) if on_windows else shlex_quote(arg)


def split_cmdline(s):
    """Perform platform-appropriate command line splitting.

    Identical to `shlex.split()` on non-windows platforms.

    Modified from https://stackoverflow.com/a/35900070
    """
    if not on_windows:
        return shlex_split(s)

    # the rest is for windows
    RE_CMD_LEX = r'''"((?:""|\\["\\]|[^"])*)"?()|(\\\\(?=\\*")|\\")|(&&?|\|\|?|\d?>|[<])|([^\s"&|<>]+)|(\s+)|(.)'''

    args = []
    accu = None   # collects pieces of one arg
    for qs, qss, esc, pipe, word, white, fail in re.findall(RE_CMD_LEX, s):
        if word:
            pass   # most frequent
        elif esc:
            word = esc[1]
        elif white or pipe:
            if accu is not None:
                args.append(accu)
            if pipe:
                args.append(pipe)
            accu = None
            continue
        elif fail:
            raise ValueError("invalid or incomplete shell string")
        elif qs:
            word = qs.replace('\\"', '"').replace('\\\\', '\\')
            if platform == 0:
                word = word.replace('""', '"')
        else:
            word = qss   # may be even empty; must be last

        accu = (accu or '') + word

    if accu is not None:
        args.append(accu)

    return args


def get_wrapped_class(wrapped):
    """Determine the command class a wrapped __call__ belongs to"""
    mod = sys.modules[wrapped.__module__]
    command_class_name = wrapped.__qualname__.split('.')[-2]
    _func_class = mod.__dict__[command_class_name]
    lgr.debug("Determined class of decorated function: %s", _func_class)
    return _func_class


# TODO whenever we feel ready for English kill the compat block below
assure_tuple_or_list = ensure_tuple_or_list
assure_iter = ensure_iter
assure_list = ensure_list
assure_list_from_str = ensure_list_from_str
assure_dict_from_str = ensure_dict_from_str
assure_bytes = ensure_bytes
assure_unicode = ensure_unicode
assure_bool = ensure_bool
assure_dir = ensure_dir


lgr.log(5, "Done importing datalad.utils")

```
--- END FILE ---

Please first localize the bug based on the issue statement, and then generate *SEARCH/REPLACE* edits to fix the issue.

Every *SEARCH/REPLACE* edit must use this format:
1. The file path
2. The start of search block: <<<<<<< SEARCH
3. A contiguous chunk of lines to search for in the existing source code
4. The dividing line: =======
5. The lines to replace into the source code
6. The end of the replace block: >>>>>>> REPLACE

Here is an example:

```python
### mathweb/flask/app.py
<<<<<<< SEARCH
from flask import Flask
=======
import math
from flask import Flask
>>>>>>> REPLACE
```
</solution>

Please note that the *SEARCH/REPLACE* edit REQUIRES PROPER INDENTATION. If you would like to add the line '        print(x)', you must fully write that out, with all those spaces before the code!
Wrap each *SEARCH/REPLACE* edit in a code block as shown in the example above. If you have multiple *SEARCH/REPLACE* edits, use a separate code block for each one.
**Analysis:**

- **Key Parts from Commit Details:**
  - **Commit Message:** Enhances `shortened_repr` to inform how many characters are not shown.
  - **Changes:** Replaces `...` with `++??? chars++` in the middle of the representation, showing the trailer of the original `repr`.
  - **Test Change:** The `test_auto_repr` was failing due to the old representation format and now passes with the new format.

- **Main Problem Highlighted by Test Results:**
  - Before the commit, the `shortened_repr` function did not indicate the number of truncated characters, leading to failing tests that expected the new format.

- **Expected Behavior:**
  - The `shortened_repr` should display the number of characters omitted and include a snippet from the end of the original representation, especially useful for complex structures like lists or tuples.

- **Actual Behavior or Error Message:**
  - The function only appends `...` at the end, without indicating the number of hidden characters, causing discrepancies in representations and test failures.

- **Issue Description:**
  - The `shortened_repr` function lacks clarity in representing truncated strings or data structures by not indicating the number of omitted characters. This leads to confusion when inspecting complex objects and causes related tests to fail due to unexpected representation formats.

---

[ISSUE]
**Title:** `shortened_repr` Does Not Indicate Number of Truncated Characters

**Description:**
When using the `shortened_repr` function on lengthy representations of objects, it simply appends `...` to indicate truncation. This makes it unclear how many characters are omitted, which is particularly problematic for complex data structures like lists or tuples where understanding the end of the structure is important.

**Example Code:**
```python
def shortened_repr(value, l=30):
    if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):
        value_repr = repr(value)
        if not value_repr.startswith('<') and len(value_repr) > l:
            value_repr = f"<<{value_repr[:l - 8]}...>>"
    return value_repr

class WithoutReprClass:
    def __init__(self):
        self.a = 'does not matter'

@auto_repr
class Buga:
    def __init__(self):
        self.a = 1
        self.b = list(range(100))
        self.c = WithoutReprClass()
        self._c = 'protect me'

def example():
    print(repr(Buga()))
```

**Expected Behavior:**
The `shortened_repr` function should display the number of characters that have been truncated and include a snippet from the end of the original representation. For example, a list should show the beginning elements, indicate how many characters are hidden, and then show the last few elements to provide better context.

**Actual Behavior:**
The function only appends `...` without indicating the number of hidden characters, resulting in representations like:
```
buga(a=1, b=<<[0, 1, 2, 3, 4, 5, 6, ...>>, c=<WithoutReprClass>)
```
This makes it difficult to understand the extent of the truncation and the structure of the represented object.

[/ISSUE]
{
    "test_get_func_kwargs_doc": "PASSED",
    "test_better_wraps": "PASSED",
    "test_swallow_outputs": "PASSED",
    "test_swallow_logs_assert": "PASSED",
    "test_disable_logger": "PASSED",
    "test_md5sum": "PASSED",
    "test_updated": "PASSED",
    "test_getpwd_basic": "PASSED",
    "test_auto_repr": "PASSED",
    "test_assure_iter": "PASSED",
    "test_assure_list_copy": "PASSED",
    "test_assure_list_from_str": "PASSED",
    "test_assure_dict_from_str": "PASSED",
    "test_assure_bool": "PASSED",
    "test_generate_chunks": "PASSED",
    "test_any_re_search": "PASSED",
    "test_not_supported_on_windows": "PASSED",
    "test_file_basename": "PASSED",
    "test_expandpath": "PASSED",
    "test_is_explicit_path": "PASSED",
    "test_make_tempfile": "PASSED",
    "test_unique": "PASSED",
    "test_all_same": "PASSED",
    "test_partition": "PASSED",
    "test_path_": "PASSED",
    "test_get_timestamp_suffix": "PASSED",
    "test_memoized_generator": "PASSED",
    "test_assure_unicode": "PASSED",
    "test_pathlib_unicode": "PASSED",
    "test_as_unicode": "PASSED",
    "test_get_trace": "PASSED",
    "test_path_startswith": "PASSED",
    "test_path_is_subpath": "PASSED",
    "test_safe_print": "PASSED",
    "test_probe_known_failure": "PASSED",
    "test_skip_if": "PASSED",
    "test_known_failure_direct_mode": "PASSED",
    "test_import_modules_fail": "PASSED",
    "test_map_items": "PASSED",
    "test_CMD_MAX_ARG": "PASSED",
    "test_never_fail": "PASSED",
    "test_rotree": "ERROR",
    "test_swallow_logs": "ERROR",
    "test_md5sum_archive": "ERROR",
    "test_getpwd_change_mode": "ERROR",
    "test_getpwd_symlink": "ERROR",
    "test_chpwd_obscure_name": "ERROR",
    "test_find_files_exclude_vcs": "ERROR",
    "test_knows_annex": "ERROR",
    "test_read_csv_lines_basic": "ERROR",
    "test_read_csv_lines_tsv_unicode": "ERROR",
    "test_read_csv_lines_one_column": "ERROR",
    "test_import_modules": "ERROR",
    "test_import_module_from_file": "ERROR",
    "test_get_open_files": "ERROR",
    "test_is_interactive": "ERROR",
    "test_find_files": "FAILED",
    "test_path_prefix": "FAILED",
    "test_get_dataset_root": "FAILED",
    "test_dlabspath": "FAILED",
    "test_create_tree": "FAILED"
}
diff --git a/datalad/utils.py b/datalad/utils.py
index cd5ec55ef..1b542ba3d 100644
--- a/datalad/utils.py
+++ b/datalad/utils.py
@@ -191,7 +191,11 @@ def shortened_repr(value, l=30):
         if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):
             value_repr = repr(value)
             if not value_repr.startswith('<') and len(value_repr) > l:
-                value_repr = "<<%s...>>" % (value_repr[:l - 8])
+                value_repr = "<<%s++%d chars++%s>>" % (
+                    value_repr[:l - 16],
+                    len(value_repr) - (l - 16 + 4),
+                    value_repr[-4:]
+                )
             elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':
                 raise ValueError("I hate those useless long reprs")
         else:
 

{"datalad/utils.py": "# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-\n# ex: set sts=4 ts=4 sw=4 noet:\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n#\n#   See COPYING file distributed along with the datalad package for the\n#   copyright and license terms.\n#\n# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##\n\nimport collections\nimport hashlib\nimport re\nimport builtins\nimport time\n\ntry:\n    from collections.abc import Callable\nexcept ImportError:  # Python <= 3.3\n    from collections import Callable\n\nimport logging\nimport shutil\nimport os\nimport sys\nimport tempfile\nimport platform\nimport gc\nimport glob\nimport gzip\nimport string\nimport warnings\nimport wrapt\n\nfrom copy import copy as shallow_copy\nfrom contextlib import contextmanager\nfrom functools import wraps\nfrom time import sleep\nimport inspect\nfrom itertools import tee\n\nimport os.path as op\nfrom os.path import sep as dirsep\nfrom os.path import commonprefix\nfrom os.path import curdir, basename, exists, realpath, islink, join as opj\nfrom os.path import isabs, normpath, expandvars, expanduser, abspath, sep\nfrom os.path import isdir\nfrom os.path import relpath\nfrom os.path import stat\nfrom os.path import dirname\nfrom os.path import split as psplit\nimport posixpath\n\nfrom shlex import (\n    quote as shlex_quote,\n    split as shlex_split,\n)\n\n# from datalad.dochelpers import get_docstring_split\nfrom datalad.consts import TIMESTAMP_FMT\n\n\nunicode_srctypes = str, bytes\n\n\nlgr = logging.getLogger(\"datalad.utils\")\n\nlgr.log(5, \"Importing datalad.utils\")\n#\n# Some useful variables\n#\nplatform_system = platform.system().lower()\non_windows = platform_system == 'windows'\non_osx = platform_system == 'darwin'\non_linux = platform_system == 'linux'\non_msys_tainted_paths = on_windows \\\n                        and 'MSYS_NO_PATHCONV' not in os.environ \\\n                        and os.environ.get('MSYSTEM', '')[:4] in ('MSYS', 'MING')\n\n\ndef get_linux_distribution():\n    \"\"\"Compatibility wrapper for {platform,distro}.linux_distribution().\n    \"\"\"\n    if hasattr(platform, \"linux_distribution\"):\n        # Use deprecated (but faster) method if it's available.\n        with warnings.catch_warnings():\n            warnings.filterwarnings(\"ignore\", category=DeprecationWarning)\n            result = platform.linux_distribution()\n    else:\n        import distro  # We require this for Python 3.8 and above.\n        result = distro.linux_distribution(full_distribution_name=False)\n    return result\n\n\ntry:\n    linux_distribution_name, linux_distribution_release \\\n        = get_linux_distribution()[:2]\n    on_debian_wheezy = on_linux \\\n                       and linux_distribution_name == 'debian' \\\n                       and linux_distribution_release.startswith('7.')\nexcept:  # pragma: no cover\n    # MIH: IndexError?\n    on_debian_wheezy = False\n    linux_distribution_name = linux_distribution_release = None\n\n# Maximal length of cmdline string\n# Query the system and use hardcoded \"knowledge\" if None\n# probably   getconf ARG_MAX   might not be available\n# The last one would be the most conservative/Windows\nCMD_MAX_ARG_HARDCODED = 2097152 if on_linux else 262144 if on_osx else 32767\ntry:\n    CMD_MAX_ARG = os.sysconf('SC_ARG_MAX')\n    assert CMD_MAX_ARG > 0\n    if sys.version_info[:2] == (3, 4):\n        # workaround for some kind of a bug which comes up with python 3.4\n        # see https://github.com/datalad/datalad/issues/3150\n        CMD_MAX_ARG = min(CMD_MAX_ARG, CMD_MAX_ARG_HARDCODED)\nexcept Exception as exc:\n    # ATM (20181005) SC_ARG_MAX available only on POSIX systems\n    # so exception would be thrown e.g. on Windows, or\n    # somehow during Debian build for nd14.04 it is coming up with -1:\n    # https://github.com/datalad/datalad/issues/3015\n    CMD_MAX_ARG = CMD_MAX_ARG_HARDCODED\n    lgr.debug(\n        \"Failed to query or got useless SC_ARG_MAX sysconf, \"\n        \"will use hardcoded value: %s\", exc)\n# Even with all careful computations we do, due to necessity to account for\n# environment and what not, we still could not figure out \"exact\" way to\n# estimate it, but it was shown that 300k safety margin on linux was sufficient.\n# https://github.com/datalad/datalad/pull/2977#issuecomment-436264710\n# 300k is ~15%, so to be safe, and for paranoid us we will just use up to 50%\n# of the length for \"safety margin\".  We might probably still blow due to\n# env vars, unicode, etc...  so any hard limit imho is not a proper solution\nCMD_MAX_ARG = int(0.5 * CMD_MAX_ARG)\nlgr.debug(\n    \"Maximal length of cmdline string (adjusted for safety margin): %d\",\n    CMD_MAX_ARG)\n\n#\n# Little helpers\n#\n\n# `getargspec` has been deprecated in Python 3.\nif hasattr(inspect, \"getfullargspec\"):\n    ArgSpecFake = collections.namedtuple(\n        \"ArgSpecFake\", [\"args\", \"varargs\", \"keywords\", \"defaults\"])\n\n    def getargspec(func):\n        return ArgSpecFake(*inspect.getfullargspec(func)[:4])\nelse:\n    getargspec = inspect.getargspec\n\n\ndef get_func_kwargs_doc(func):\n    \"\"\" Provides args for a function\n\n    Parameters\n    ----------\n    func: str\n      name of the function from which args are being requested\n\n    Returns\n    -------\n    list\n      of the args that a function takes in\n    \"\"\"\n    return getargspec(func)[0]\n\n    # TODO: format error message with descriptions of args\n    # return [repr(dict(get_docstring_split(func)[1]).get(x)) for x in getargspec(func)[0]]\n\n\ndef any_re_search(regexes, value):\n    \"\"\"Return if any of regexes (list or str) searches succesfully for value\"\"\"\n    for regex in ensure_tuple_or_list(regexes):\n        if re.search(regex, value):\n            return True\n    return False\n\n\ndef not_supported_on_windows(msg=None):\n    \"\"\"A little helper to be invoked to consistently fail whenever functionality is\n    not supported (yet) on Windows\n    \"\"\"\n    if on_windows:\n        raise NotImplementedError(\"This functionality is not yet implemented for Windows OS\"\n                                  + (\": %s\" % msg if msg else \"\"))\n\n\ndef shortened_repr(value, l=30):\n    try:\n        if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):\n            value_repr = repr(value)\n            if not value_repr.startswith('<') and len(value_repr) > l:\n                value_repr = \"<<%s...>>\" % (value_repr[:l - 8])\n            elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':\n                raise ValueError(\"I hate those useless long reprs\")\n        else:\n            raise ValueError(\"gimme class\")\n    except Exception as e:\n        value_repr = \"<%s>\" % value.__class__.__name__.split('.')[-1]\n    return value_repr\n\n\ndef __auto_repr__(obj):\n    attr_names = tuple()\n    if hasattr(obj, '__dict__'):\n        attr_names += tuple(obj.__dict__.keys())\n    if hasattr(obj, '__slots__'):\n        attr_names += tuple(obj.__slots__)\n\n    items = []\n    for attr in sorted(set(attr_names)):\n        if attr.startswith('_'):\n            continue\n        value = getattr(obj, attr)\n        # TODO:  should we add this feature to minimize some talktative reprs\n        # such as of URL?\n        #if value is None:\n        #    continue\n        items.append(\"%s=%s\" % (attr, shortened_repr(value)))\n\n    return \"%s(%s)\" % (obj.__class__.__name__, ', '.join(items))\n\n\ndef auto_repr(cls):\n    \"\"\"Decorator for a class to assign it an automagic quick and dirty __repr__\n\n    It uses public class attributes to prepare repr of a class\n\n    Original idea: http://stackoverflow.com/a/27799004/1265472\n    \"\"\"\n\n    cls.__repr__ = __auto_repr__\n    return cls\n\n\ndef _is_stream_tty(stream):\n    try:\n        # TODO: check on windows if hasattr check would work correctly and\n        # add value:\n        return stream.isatty()\n    except ValueError as exc:\n        # Who knows why it is a ValueError, but let's try to be specific\n        # If there is a problem with I/O - non-interactive, otherwise reraise\n        if \"I/O\" in str(exc):\n            return False\n        raise\n\n\ndef is_interactive():\n    \"\"\"Return True if all in/outs are open and tty.\n\n    Note that in a somewhat abnormal case where e.g. stdin is explicitly\n    closed, and any operation on it would raise a\n    `ValueError(\"I/O operation on closed file\")` exception, this function\n    would just return False, since the session cannot be used interactively.\n    \"\"\"\n    return all(_is_stream_tty(s) for s in (sys.stdin, sys.stdout, sys.stderr))\n\n\ndef get_ipython_shell():\n    \"\"\"Detect if running within IPython and returns its `ip` (shell) object\n\n    Returns None if not under ipython (no `get_ipython` function)\n    \"\"\"\n    try:\n        return get_ipython()\n    except NameError:\n        return None\n\n\ndef md5sum(filename):\n    \"\"\"Compute an MD5 sum for the given file\n    \"\"\"\n    from datalad.support.digests import Digester\n    return Digester(digests=['md5'])(filename)['md5']\n\n\ndef sorted_files(dout):\n    \"\"\"Return a (sorted) list of files under dout\n    \"\"\"\n    return sorted(sum([[opj(r, f)[len(dout) + 1:] for f in files]\n                       for r, d, files in os.walk(dout)\n                       if not '.git' in r], []))\n\n_encoded_dirsep = r'\\\\'  if on_windows else r'/'\n_VCS_REGEX = r'%s\\.(?:git|gitattributes|svn|bzr|hg)(?:%s|$)' % (\n    _encoded_dirsep, _encoded_dirsep)\n_DATALAD_REGEX = r'%s\\.(?:datalad)(?:%s|$)' % (\n    _encoded_dirsep, _encoded_dirsep)\n\n\ndef find_files(regex, topdir=curdir, exclude=None, exclude_vcs=True, exclude_datalad=False, dirs=False):\n    \"\"\"Generator to find files matching regex\n\n    Parameters\n    ----------\n    regex: basestring\n    exclude: basestring, optional\n      Matches to exclude\n    exclude_vcs:\n      If True, excludes commonly known VCS subdirectories.  If string, used\n      as regex to exclude those files (regex: `%r`)\n    exclude_datalad:\n      If True, excludes files known to be datalad meta-data files (e.g. under\n      .datalad/ subdirectory) (regex: `%r`)\n    topdir: basestring, optional\n      Directory where to search\n    dirs: bool, optional\n      Whether to match directories as well as files\n    \"\"\"\n    for dirpath, dirnames, filenames in os.walk(topdir):\n        names = (dirnames + filenames) if dirs else filenames\n        # TODO: might want to uniformize on windows to use '/'\n        paths = (opj(dirpath, name) for name in names)\n        for path in filter(re.compile(regex).search, paths):\n            path = path.rstrip(dirsep)\n            if exclude and re.search(exclude, path):\n                continue\n            if exclude_vcs and re.search(_VCS_REGEX, path):\n                continue\n            if exclude_datalad and re.search(_DATALAD_REGEX, path):\n                continue\n            yield path\nfind_files.__doc__ %= (_VCS_REGEX, _DATALAD_REGEX)\n\n\ndef expandpath(path, force_absolute=True):\n    \"\"\"Expand all variables and user handles in a path.\n\n    By default return an absolute path\n    \"\"\"\n    path = expandvars(expanduser(path))\n    if force_absolute:\n        path = abspath(path)\n    return path\n\n\ndef posix_relpath(path, start=None):\n    \"\"\"Behave like os.path.relpath, but always return POSIX paths...\n\n    on any platform.\"\"\"\n    # join POSIX style\n    return posixpath.join(\n        # split and relpath native style\n        # python2.7 ntpath implementation of relpath cannot handle start=None\n        *psplit(\n            relpath(path, start=start if start is not None else '')))\n\n\ndef is_explicit_path(path):\n    \"\"\"Return whether a path explicitly points to a location\n\n    Any absolute path, or relative path starting with either '../' or\n    './' is assumed to indicate a location on the filesystem. Any other\n    path format is not considered explicit.\"\"\"\n    path = expandpath(path, force_absolute=False)\n    return isabs(path) \\\n        or path.startswith(os.curdir + os.sep) \\\n        or path.startswith(os.pardir + os.sep)\n\n\n# handle this dance once, and import pathlib from here\n# in all other places\n\nfrom pathlib import (\n    Path,\n    PurePath,\n    PurePosixPath,\n)\n\n\ndef rotree(path, ro=True, chmod_files=True):\n    \"\"\"To make tree read-only or writable\n\n    Parameters\n    ----------\n    path : string\n      Path to the tree/directory to chmod\n    ro : bool, optional\n      Whether to make it R/O (default) or RW\n    chmod_files : bool, optional\n      Whether to operate also on files (not just directories)\n    \"\"\"\n    if ro:\n        chmod = lambda f: os.chmod(f, os.stat(f).st_mode & ~stat.S_IWRITE)\n    else:\n        chmod = lambda f: os.chmod(f, os.stat(f).st_mode | stat.S_IWRITE | stat.S_IREAD)\n\n    for root, dirs, files in os.walk(path, followlinks=False):\n        if chmod_files:\n            for f in files:\n                fullf = opj(root, f)\n                # might be the \"broken\" symlink which would fail to stat etc\n                if exists(fullf):\n                    chmod(fullf)\n        chmod(root)\n\n\ndef rmtree(path, chmod_files='auto', children_only=False, *args, **kwargs):\n    \"\"\"To remove git-annex .git it is needed to make all files and directories writable again first\n\n    Parameters\n    ----------\n    chmod_files : string or bool, optional\n       Whether to make files writable also before removal.  Usually it is just\n       a matter of directories to have write permissions.\n       If 'auto' it would chmod files on windows by default\n    children_only : bool, optional\n       If set, all files and subdirectories would be removed while the path\n       itself (must be a directory) would be preserved\n    `*args` :\n    `**kwargs` :\n       Passed into shutil.rmtree call\n    \"\"\"\n    # Give W permissions back only to directories, no need to bother with files\n    if chmod_files == 'auto':\n        chmod_files = on_windows\n    # TODO:  yoh thinks that if we could quickly check our Flyweight for\n    #        repos if any of them is under the path, and could call .precommit\n    #        on those to possibly stop batched processes etc, we did not have\n    #        to do it on case by case\n    # Check for open files\n    assert_no_open_files(path)\n\n    if children_only:\n        if not os.path.isdir(path):\n            raise ValueError(\"Can remove children only of directories\")\n        for p in os.listdir(path):\n            rmtree(op.join(path, p))\n        return\n    if not (os.path.islink(path) or not os.path.isdir(path)):\n        rotree(path, ro=False, chmod_files=chmod_files)\n        _rmtree(path, *args, **kwargs)\n    else:\n        # just remove the symlink\n        unlink(path)\n\n\ndef rmdir(path, *args, **kwargs):\n    \"\"\"os.rmdir with our optional checking for open files\"\"\"\n    assert_no_open_files(path)\n    os.rmdir(path)\n\n\ndef get_open_files(path, log_open=False):\n    \"\"\"Get open files under a path\n\n    Parameters\n    ----------\n    path : str\n      File or directory to check for open files under\n    log_open : bool or int\n      If set - logger level to use\n\n    Returns\n    -------\n    dict\n      path : pid\n\n    \"\"\"\n    # Original idea: https://stackoverflow.com/a/11115521/1265472\n    import psutil\n    files = {}\n    # since the ones returned by psutil would not be aware of symlinks in the\n    # path we should also get realpath for path\n    path = realpath(path)\n    for proc in psutil.process_iter():\n        try:\n            open_paths = [p.path for p in proc.open_files()] + [proc.cwd()]\n            for p in open_paths:\n                # note: could be done more efficiently so we do not\n                # renormalize path over and over again etc\n                if path_startswith(p, path):\n                    files[p] = proc\n        # Catch a race condition where a process ends\n        # before we can examine its files\n        except psutil.NoSuchProcess:\n            pass\n        except psutil.AccessDenied:\n            pass\n\n    if files and log_open:\n        lgr.log(log_open, \"Open files under %s: %s\", path, files)\n    return files\n\n\n_assert_no_open_files_cfg = os.environ.get('DATALAD_ASSERT_NO_OPEN_FILES')\nif _assert_no_open_files_cfg:\n    def assert_no_open_files(path):\n        files = get_open_files(path, log_open=40)\n        if _assert_no_open_files_cfg == 'assert':\n            assert not files\n        elif files:\n            if _assert_no_open_files_cfg == 'pdb':\n                import pdb\n                pdb.set_trace()\n            elif _assert_no_open_files_cfg == 'epdb':\n                import epdb\n                epdb.serve()\n            pass\n        # otherwise we would just issue that error message in the log\nelse:\n    def assert_no_open_files(*args, **kwargs):\n        pass\n\n\ndef rmtemp(f, *args, **kwargs):\n    \"\"\"Wrapper to centralize removing of temp files so we could keep them around\n\n    It will not remove the temporary file/directory if DATALAD_TESTS_TEMP_KEEP\n    environment variable is defined\n    \"\"\"\n    if not os.environ.get('DATALAD_TESTS_TEMP_KEEP'):\n        if not os.path.lexists(f):\n            lgr.debug(\"Path %s does not exist, so can't be removed\" % f)\n            return\n        lgr.log(5, \"Removing temp file: %s\" % f)\n        # Can also be a directory\n        if os.path.isdir(f):\n            rmtree(f, *args, **kwargs)\n        else:\n            unlink(f)\n    else:\n        lgr.info(\"Keeping temp file: %s\" % f)\n\n\ndef file_basename(name, return_ext=False):\n    \"\"\"\n    Strips up to 2 extensions of length up to 4 characters and starting with alpha\n    not a digit, so we could get rid of .tar.gz etc\n    \"\"\"\n    bname = basename(name)\n    fbname = re.sub(r'(\\.[a-zA-Z_]\\S{1,4}){0,2}$', '', bname)\n    if return_ext:\n        return fbname, bname[len(fbname) + 1:]\n    else:\n        return fbname\n\n\ndef escape_filename(filename):\n    \"\"\"Surround filename in \"\" and escape \" in the filename\n    \"\"\"\n    filename = filename.replace('\"', r'\\\"').replace('`', r'\\`')\n    filename = '\"%s\"' % filename\n    return filename\n\n\ndef encode_filename(filename):\n    \"\"\"Encode unicode filename\n    \"\"\"\n    if isinstance(filename, str):\n        return filename.encode(sys.getfilesystemencoding())\n    else:\n        return filename\n\n\ndef decode_input(s):\n    \"\"\"Given input string/bytes, decode according to stdin codepage (or UTF-8)\n    if not defined\n\n    If fails -- issue warning and decode allowing for errors\n    being replaced\n    \"\"\"\n    if isinstance(s, str):\n        return s\n    else:\n        encoding = sys.stdin.encoding or 'UTF-8'\n        try:\n            return s.decode(encoding)\n        except UnicodeDecodeError as exc:\n            lgr.warning(\n                \"Failed to decode input string using %s encoding. \"\n                \"Decoding allowing for errors\", encoding)\n            return s.decode(encoding, errors='replace')\n\n\nif on_windows:\n    def lmtime(filepath, mtime):\n        \"\"\"Set mtime for files.  On Windows a merely adapter to os.utime\n        \"\"\"\n        os.utime(filepath, (time.time(), mtime))\nelse:\n    def lmtime(filepath, mtime):\n        \"\"\"Set mtime for files, while not de-referencing symlinks.\n\n        To overcome absence of os.lutime\n\n        Works only on linux and OSX ATM\n        \"\"\"\n        from .cmd import Runner\n        # convert mtime to format touch understands [[CC]YY]MMDDhhmm[.SS]\n        smtime = time.strftime(\"%Y%m%d%H%M.%S\", time.localtime(mtime))\n        lgr.log(3, \"Setting mtime for %s to %s == %s\", filepath, mtime, smtime)\n        Runner().run(['touch', '-h', '-t', '%s' % smtime, filepath])\n        rfilepath = realpath(filepath)\n        if islink(filepath) and exists(rfilepath):\n            # trust noone - adjust also of the target file\n            # since it seemed like downloading under OSX (was it using curl?)\n            # didn't bother with timestamps\n            lgr.log(3, \"File is a symlink to %s Setting mtime for it to %s\",\n                    rfilepath, mtime)\n            os.utime(rfilepath, (time.time(), mtime))\n        # doesn't work on OSX\n        # Runner().run(['touch', '-h', '-d', '@%s' % mtime, filepath])\n\n\ndef ensure_tuple_or_list(obj):\n    \"\"\"Given an object, wrap into a tuple if not list or tuple\n    \"\"\"\n    if isinstance(obj, (list, tuple)):\n        return obj\n    return (obj,)\n\n\ndef ensure_iter(s, cls, copy=False, iterate=True):\n    \"\"\"Given not a list, would place it into a list. If None - empty list is returned\n\n    Parameters\n    ----------\n    s: list or anything\n    cls: class\n      Which iterable class to ensure\n    copy: bool, optional\n      If correct iterable is passed, it would generate its shallow copy\n    iterate: bool, optional\n      If it is not a list, but something iterable (but not a str)\n      iterate over it.\n    \"\"\"\n\n    if isinstance(s, cls):\n        return s if not copy else shallow_copy(s)\n    elif isinstance(s, str):\n        return cls((s,))\n    elif iterate and hasattr(s, '__iter__'):\n        return cls(s)\n    elif s is None:\n        return cls()\n    else:\n        return cls((s,))\n\n\ndef ensure_list(s, copy=False, iterate=True):\n    \"\"\"Given not a list, would place it into a list. If None - empty list is returned\n\n    Parameters\n    ----------\n    s: list or anything\n    copy: bool, optional\n      If list is passed, it would generate a shallow copy of the list\n    iterate: bool, optional\n      If it is not a list, but something iterable (but not a str)\n      iterate over it.\n    \"\"\"\n    return ensure_iter(s, list, copy=copy, iterate=iterate)\n\n\ndef ensure_list_from_str(s, sep='\\n'):\n    \"\"\"Given a multiline string convert it to a list of return None if empty\n\n    Parameters\n    ----------\n    s: str or list\n    \"\"\"\n\n    if not s:\n        return None\n\n    if isinstance(s, list):\n        return s\n    return s.split(sep)\n\n\ndef ensure_dict_from_str(s, **kwargs):\n    \"\"\"Given a multiline string with key=value items convert it to a dictionary\n\n    Parameters\n    ----------\n    s: str or dict\n\n    Returns None if input s is empty\n    \"\"\"\n\n    if not s:\n        return None\n\n    if isinstance(s, dict):\n        return s\n\n    out = {}\n    for value_str in ensure_list_from_str(s, **kwargs):\n        if '=' not in value_str:\n            raise ValueError(\"{} is not in key=value format\".format(repr(value_str)))\n        k, v = value_str.split('=', 1)\n        if k in out:\n            err = \"key {} was already defined in {}, but new value {} was provided\".format(k, out, v)\n            raise ValueError(err)\n        out[k] = v\n    return out\n\n\ndef ensure_bytes(s, encoding='utf-8'):\n    \"\"\"Convert/encode unicode string to bytes.\n\n    If `s` isn't a string, return it as is.\n\n    Parameters\n    ----------\n    encoding: str, optional\n      Encoding to use.  \"utf-8\" is the default\n    \"\"\"\n    if not isinstance(s, str):\n        return s\n    return s.encode(encoding)\n\n\ndef ensure_unicode(s, encoding=None, confidence=None):\n    \"\"\"Convert/decode bytestring to unicode.\n\n    If `s` isn't a bytestring, return it as is.\n\n    Parameters\n    ----------\n    encoding: str, optional\n      Encoding to use.  If None, \"utf-8\" is tried, and then if not a valid\n      UTF-8, encoding will be guessed\n    confidence: float, optional\n      A value between 0 and 1, so if guessing of encoding is of lower than\n      specified confidence, ValueError is raised\n    \"\"\"\n    if not isinstance(s, bytes):\n        return s\n    if encoding is None:\n        # Figure out encoding, defaulting to 'utf-8' which is our common\n        # target in contemporary digital society\n        try:\n            return s.decode('utf-8')\n        except UnicodeDecodeError as exc:\n            from .dochelpers import exc_str\n            lgr.debug(\"Failed to decode a string as utf-8: %s\", exc_str(exc))\n        # And now we could try to guess\n        from chardet import detect\n        enc = detect(s)\n        denc = enc.get('encoding', None)\n        if denc:\n            denc_confidence = enc.get('confidence', 0)\n            if confidence is not None and  denc_confidence < confidence:\n                raise ValueError(\n                    \"Failed to auto-detect encoding with high enough \"\n                    \"confidence. Highest confidence was %s for %s\"\n                    % (denc_confidence, denc)\n                )\n            return s.decode(denc)\n        else:\n            raise ValueError(\n                \"Could not decode value as utf-8, or to guess its encoding: %s\"\n                % repr(s)\n            )\n    else:\n        return s.decode(encoding)\n\n\ndef ensure_bool(s):\n    \"\"\"Convert value into boolean following convention for strings\n\n    to recognize on,True,yes as True, off,False,no as False\n    \"\"\"\n    if isinstance(s, str):\n        if s.isdigit():\n            return bool(int(s))\n        sl = s.lower()\n        if sl in {'y', 'yes', 'true', 'on'}:\n            return True\n        elif sl in {'n', 'no', 'false', 'off'}:\n            return False\n        else:\n            raise ValueError(\"Do not know how to treat %r as a boolean\" % s)\n    return bool(s)\n\n\ndef as_unicode(val, cast_types=object):\n    \"\"\"Given an arbitrary value, would try to obtain unicode value of it\n    \n    For unicode it would return original value, for python2 str or python3\n    bytes it would use ensure_unicode, for None - an empty (unicode) string,\n    and for any other type (see `cast_types`) - would apply the unicode \n    constructor.  If value is not an instance of `cast_types`, TypeError\n    is thrown\n    \n    Parameters\n    ----------\n    cast_types: type\n      Which types to cast to unicode by providing to constructor\n    \"\"\"\n    if val is None:\n        return u''\n    elif isinstance(val, str):\n        return val\n    elif isinstance(val, unicode_srctypes):\n        return ensure_unicode(val)\n    elif isinstance(val, cast_types):\n        return str(val)\n    else:\n        raise TypeError(\n            \"Value %r is not of any of known or provided %s types\"\n            % (val, cast_types))\n\n\ndef unique(seq, key=None, reverse=False):\n    \"\"\"Given a sequence return a list only with unique elements while maintaining order\n\n    This is the fastest solution.  See\n    https://www.peterbe.com/plog/uniqifiers-benchmark\n    and\n    http://stackoverflow.com/a/480227/1265472\n    for more information.\n    Enhancement -- added ability to compare for uniqueness using a key function\n\n    Parameters\n    ----------\n    seq:\n      Sequence to analyze\n    key: callable, optional\n      Function to call on each element so we could decide not on a full\n      element, but on its member etc\n    reverse: bool, optional\n      If True, uniqueness checked in the reverse order, so that the later ones\n      will take the order\n    \"\"\"\n    seen = set()\n    seen_add = seen.add\n\n    trans = reversed if reverse else lambda x: x\n\n    if not key:\n        out = [x for x in trans(seq) if not (x in seen or seen_add(x))]\n    else:\n        # OPT: could be optimized, since key is called twice, but for our cases\n        # should be just as fine\n        out = [x for x in trans(seq) if not (key(x) in seen or seen_add(key(x)))]\n\n    return out[::-1] if reverse else out\n\n\ndef all_same(items):\n    \"\"\"Quick check if all items are the same.\n\n    Identical to a check like len(set(items)) == 1 but\n    should be more efficient while working on generators, since would\n    return False as soon as any difference detected thus possibly avoiding\n    unnecessary evaluations\n    \"\"\"\n    first = True\n    first_item = None\n    for item in items:\n        if first:\n            first = False\n            first_item = item\n        else:\n            if item != first_item:\n                return False\n    # So we return False if was empty\n    return not first\n\n\ndef map_items(func, v):\n    \"\"\"A helper to apply `func` to all elements (keys and values) within dict\n\n    No type checking of values passed to func is done, so `func`\n    should be resilient to values which it should not handle\n\n    Initial usecase - apply_recursive(url_fragment, ensure_unicode)\n    \"\"\"\n    # map all elements within item\n    return v.__class__(\n        item.__class__(map(func, item))\n        for item in v.items()\n    )\n\n\ndef partition(items, predicate=bool):\n    \"\"\"Partition `items` by `predicate`.\n\n    Parameters\n    ----------\n    items : iterable\n    predicate : callable\n        A function that will be mapped over each element in `items`. The\n        elements will partitioned based on whether the return value is false or\n        true.\n\n    Returns\n    -------\n    A tuple with two generators, the first for 'false' items and the second for\n    'true' ones.\n\n    Notes\n    -----\n    Taken from Peter Otten's snippet posted at\n    https://nedbatchelder.com/blog/201306/filter_a_list_into_two_parts.html\n    \"\"\"\n    a, b = tee((predicate(item), item) for item in items)\n    return ((item for pred, item in a if not pred),\n            (item for pred, item in b if pred))\n\n\ndef generate_chunks(container, size):\n    \"\"\"Given a container, generate chunks from it with size up to `size`\n    \"\"\"\n    # There could be a \"smarter\" solution but I think this would suffice\n    assert size > 0,  \"Size should be non-0 positive\"\n    while container:\n        yield container[:size]\n        container = container[size:]\n\n\ndef generate_file_chunks(files, cmd=None):\n    \"\"\"Given a list of files, generate chunks of them to avoid exceding cmdline length\n\n    Parameters\n    ----------\n    files: list of str\n    cmd: str or list of str, optional\n      Command to account for as well\n    \"\"\"\n    files = ensure_list(files)\n    cmd = ensure_list(cmd)\n\n    maxl = max(map(len, files)) if files else 0\n    chunk_size = max(\n        1,  # should at least be 1. If blows then - not our fault\n        (CMD_MAX_ARG\n         - sum((len(x) + 3) for x in cmd)\n         - 4  # for '--' below\n         ) // (maxl + 3)  # +3 for possible quotes and a space\n    )\n    # TODO: additional treatment for \"too many arguments\"? although\n    # as https://github.com/datalad/datalad/issues/1883#issuecomment\n    # -436272758\n    # shows there seems to be no hardcoded limit on # of arguments,\n    # but may be we decide to go for smth like follow to be on safe side\n    # chunk_size = min(10240 - len(cmd), chunk_size)\n    file_chunks = generate_chunks(files, chunk_size)\n    return file_chunks\n\n\n#\n# Generators helpers\n#\n\ndef saved_generator(gen):\n    \"\"\"Given a generator returns two generators, where 2nd one just replays\n\n    So the first one would be going through the generated items and 2nd one\n    would be yielding saved items\n    \"\"\"\n    saved = []\n\n    def gen1():\n        for x in gen:  # iterating over original generator\n            saved.append(x)\n            yield x\n\n    def gen2():\n        for x in saved:  # yielding saved entries\n            yield x\n\n    return gen1(), gen2()\n\n\n#\n# Decorators\n#\ndef better_wraps(to_be_wrapped):\n    \"\"\"Decorator to replace `functools.wraps`\n\n    This is based on `wrapt` instead of `functools` and in opposition to `wraps`\n    preserves the correct signature of the decorated function.\n    It is written with the intention to replace the use of `wraps` without any\n    need to rewrite the actual decorators.\n    \"\"\"\n\n    @wrapt.decorator(adapter=to_be_wrapped)\n    def intermediator(to_be_wrapper, instance, args, kwargs):\n        return to_be_wrapper(*args, **kwargs)\n\n    return intermediator\n\n\n# Borrowed from pandas\n# Copyright: 2011-2014, Lambda Foundry, Inc. and PyData Development Team\n# License: BSD-3\ndef optional_args(decorator):\n    \"\"\"allows a decorator to take optional positional and keyword arguments.\n        Assumes that taking a single, callable, positional argument means that\n        it is decorating a function, i.e. something like this::\n\n            @my_decorator\n            def function(): pass\n\n        Calls decorator with decorator(f, `*args`, `**kwargs`)\"\"\"\n\n    @better_wraps(decorator)\n    def wrapper(*args, **kwargs):\n        def dec(f):\n            return decorator(f, *args, **kwargs)\n\n        is_decorating = not kwargs and len(args) == 1 and isinstance(args[0], Callable)\n        if is_decorating:\n            f = args[0]\n            args = []\n            return dec(f)\n        else:\n            return dec\n\n    return wrapper\n\n\n# TODO: just provide decorators for tempfile.mk* functions. This is ugly!\ndef get_tempfile_kwargs(tkwargs=None, prefix=\"\", wrapped=None):\n    \"\"\"Updates kwargs to be passed to tempfile. calls depending on env vars\n    \"\"\"\n    if tkwargs is None:\n        tkwargs_ = {}\n    else:\n        # operate on a copy of tkwargs to avoid any side-effects\n        tkwargs_ = tkwargs.copy()\n\n    # TODO: don't remember why I had this one originally\n    # if len(targs)<2 and \\\n    if 'prefix' not in tkwargs_:\n        tkwargs_['prefix'] = '_'.join(\n            ['datalad_temp'] +\n            ([prefix] if prefix else []) +\n            ([''] if (on_windows or not wrapped) else [wrapped.__name__]))\n\n    directory = os.environ.get('DATALAD_TESTS_TEMP_DIR')\n    if directory and 'dir' not in tkwargs_:\n        tkwargs_['dir'] = directory\n\n    return tkwargs_\n\n\n@optional_args\ndef line_profile(func):\n    \"\"\"Q&D helper to line profile the function and spit out stats\n    \"\"\"\n    import line_profiler\n    prof = line_profiler.LineProfiler()\n\n    @wraps(func)\n    def newfunc(*args, **kwargs):\n        try:\n            pfunc = prof(func)\n            return pfunc(*args, **kwargs)\n        finally:\n            prof.print_stats()\n    return newfunc\n\n\n# Borrowed from duecredit to wrap duecredit-handling to guarantee failsafe\ndef never_fail(f):\n    \"\"\"Assure that function never fails -- all exceptions are caught\n\n    Returns `None` if function fails internally.\n    \"\"\"\n    @wraps(f)\n    def wrapped_func(*args, **kwargs):\n        try:\n            return f(*args, **kwargs)\n        except Exception as e:\n            lgr.warning(\n                \"DataLad internal failure while running %s: %r. \"\n                \"Please report at https://github.com/datalad/datalad/issues\"\n                % (f, e)\n            )\n\n    if os.environ.get('DATALAD_ALLOW_FAIL', False):\n        return f\n    else:\n        return wrapped_func\n\n\n#\n# Context Managers\n#\n\n\n@contextmanager\ndef nothing_cm():\n    \"\"\"Just a dummy cm to programmically switch context managers\"\"\"\n    yield\n\n\n@contextmanager\ndef swallow_outputs():\n    \"\"\"Context manager to help consuming both stdout and stderr, and print()\n\n    stdout is available as cm.out and stderr as cm.err whenever cm is the\n    yielded context manager.\n    Internally uses temporary files to guarantee absent side-effects of swallowing\n    into StringIO which lacks .fileno.\n\n    print mocking is necessary for some uses where sys.stdout was already bound\n    to original sys.stdout, thus mocking it later had no effect. Overriding\n    print function had desired effect\n    \"\"\"\n\n    class StringIOAdapter(object):\n        \"\"\"Little adapter to help getting out/err values\n        \"\"\"\n        def __init__(self):\n            kw = get_tempfile_kwargs({}, prefix=\"outputs\")\n\n            self._out = open(tempfile.mktemp(**kw), 'w')\n            self._err = open(tempfile.mktemp(**kw), 'w')\n\n        def _read(self, h):\n            with open(h.name) as f:\n                return f.read()\n\n        @property\n        def out(self):\n            if not self._out.closed:\n                self._out.flush()\n            return self._read(self._out)\n\n        @property\n        def err(self):\n            if not self._err.closed:\n                self._err.flush()\n            return self._read(self._err)\n\n        @property\n        def handles(self):\n            return self._out, self._err\n\n        def cleanup(self):\n            self._out.close()\n            self._err.close()\n            out_name = self._out.name\n            err_name = self._err.name\n            del self._out\n            del self._err\n            gc.collect()\n            rmtemp(out_name)\n            rmtemp(err_name)\n\n    def fake_print(*args, **kwargs):\n        sep = kwargs.pop('sep', ' ')\n        end = kwargs.pop('end', '\\n')\n        file = kwargs.pop('file', sys.stdout)\n\n        if file in (oldout, olderr, sys.stdout, sys.stderr):\n            # we mock\n            try:\n                sys.stdout.write(sep.join(args) + end)\n            except UnicodeEncodeError as exc:\n                lgr.error(\n                    \"Failed to write to mocked stdout, got %s, continue as it \"\n                    \"didn't happen\",  exc)\n        else:\n            # must be some other file one -- leave it alone\n            oldprint(*args, sep=sep, end=end, file=file)\n\n    from .ui import ui\n    # preserve -- they could have been mocked already\n    oldprint = getattr(builtins, 'print')\n    oldout, olderr = sys.stdout, sys.stderr\n    olduiout = ui.out\n    adapter = StringIOAdapter()\n\n    try:\n        sys.stdout, sys.stderr = adapter.handles\n        ui.out = adapter.handles[0]\n        setattr(builtins, 'print', fake_print)\n\n        yield adapter\n    finally:\n        sys.stdout, sys.stderr, ui.out = oldout, olderr, olduiout\n        setattr(builtins, 'print',  oldprint)\n        adapter.cleanup()\n\n\n@contextmanager\ndef swallow_logs(new_level=None, file_=None, name='datalad'):\n    \"\"\"Context manager to consume all logs.\n\n    \"\"\"\n    lgr = logging.getLogger(name)\n\n    # Keep old settings\n    old_level = lgr.level\n    old_handlers = lgr.handlers\n\n    # Let's log everything into a string\n    # TODO: generalize with the one for swallow_outputs\n    class StringIOAdapter(object):\n        \"\"\"Little adapter to help getting out values\n\n        And to stay consistent with how swallow_outputs behaves\n        \"\"\"\n        def __init__(self):\n            if file_ is None:\n                kw = get_tempfile_kwargs({}, prefix=\"logs\")\n                out_file = tempfile.mktemp(**kw)\n            else:\n                out_file = file_\n            # PY3 requires clearly one or another.  race condition possible\n            self._out = open(out_file, 'a')\n            self._final_out = None\n\n        def _read(self, h):\n            with open(h.name) as f:\n                return f.read()\n\n        @property\n        def out(self):\n            if self._final_out is not None:\n                # we closed and cleaned up already\n                return self._final_out\n            else:\n                self._out.flush()\n                return self._read(self._out)\n\n        @property\n        def lines(self):\n            return self.out.split('\\n')\n\n        @property\n        def handle(self):\n            return self._out\n\n        def cleanup(self):\n            # store for access while object exists\n            self._final_out = self.out\n            self._out.close()\n            out_name = self._out.name\n            del self._out\n            gc.collect()\n            if not file_:\n                rmtemp(out_name)\n\n        def assert_logged(self, msg=None, level=None, regex=True, **kwargs):\n            \"\"\"Provide assertion on whether a msg was logged at a given level\n\n            If neither `msg` nor `level` provided, checks if anything was logged\n            at all.\n\n            Parameters\n            ----------\n            msg: str, optional\n              Message (as a regular expression, if `regex`) to be searched.\n              If no msg provided, checks if anything was logged at a given level.\n            level: str, optional\n              String representing the level to be logged\n            regex: bool, optional\n              If False, regular `assert_in` is used\n            **kwargs: str, optional\n              Passed to `assert_re_in` or `assert_in`\n            \"\"\"\n            from datalad.tests.utils import assert_re_in\n            from datalad.tests.utils import assert_in\n\n            if regex:\n                match = r'\\[%s\\] ' % level if level else r\"\\[\\S+\\] \"\n            else:\n                match = '[%s] ' % level if level else ''\n\n            if msg:\n                match += msg\n\n            if match:\n                (assert_re_in if regex else assert_in)(match, self.out, **kwargs)\n            else:\n                assert not kwargs, \"no kwargs to be passed anywhere\"\n                assert self.out, \"Nothing was logged!?\"\n\n    adapter = StringIOAdapter()\n    # TODO: it does store messages but without any formatting, i.e. even without\n    # date/time prefix etc.  IMHO it should preserve formatting in case if file_ is\n    # set\n    swallow_handler = logging.StreamHandler(adapter.handle)\n    # we want to log levelname so we could test against it\n    swallow_handler.setFormatter(\n        logging.Formatter('[%(levelname)s] %(message)s'))\n    # Inherit filters\n    from datalad.log import ProgressHandler\n    swallow_handler.filters = sum([h.filters for h in old_handlers\n                                   if not isinstance(h, ProgressHandler)],\n                                  [])\n    lgr.handlers = [swallow_handler]\n    if old_level < logging.DEBUG:  # so if HEAVYDEBUG etc -- show them!\n        lgr.handlers += old_handlers\n\n    if isinstance(new_level, str):\n        new_level = getattr(logging, new_level)\n\n    if new_level is not None:\n        lgr.setLevel(new_level)\n\n    try:\n        yield adapter\n        # TODO: if file_ and there was an exception -- most probably worth logging it?\n        # although ideally it should be the next log outside added to that file_ ... oh well\n    finally:\n        lgr.handlers = old_handlers\n        lgr.setLevel(old_level)\n        adapter.cleanup()\n\n\n# TODO: May be melt in with swallow_logs at some point:\n@contextmanager\ndef disable_logger(logger=None):\n    \"\"\"context manager to temporarily disable logging\n\n    This is to provide one of swallow_logs' purposes without unnecessarily\n    creating temp files (see gh-1865)\n\n    Parameters\n    ----------\n    logger: Logger\n        Logger whose handlers will be ordered to not log anything.\n        Default: datalad's topmost Logger ('datalad')\n    \"\"\"\n\n    class NullFilter(logging.Filter):\n        \"\"\"Filter class to reject all records\n        \"\"\"\n        def filter(self, record):\n            return 0\n\n    if logger is None:\n        # default: all of datalad's logging:\n        logger = logging.getLogger('datalad')\n\n    filter_ = NullFilter(logger.name)\n    [h.addFilter(filter_) for h in logger.handlers]\n\n    try:\n        yield logger\n    finally:\n        [h.removeFilter(filter_) for h in logger.handlers]\n\n\n#\n# Additional handlers\n#\n_sys_excepthook = sys.excepthook  # Just in case we ever need original one\n\n\ndef setup_exceptionhook(ipython=False):\n    \"\"\"Overloads default sys.excepthook with our exceptionhook handler.\n\n       If interactive, our exceptionhook handler will invoke\n       pdb.post_mortem; if not interactive, then invokes default handler.\n    \"\"\"\n\n    def _datalad_pdb_excepthook(type, value, tb):\n        import traceback\n        traceback.print_exception(type, value, tb)\n        print()\n        if is_interactive():\n            import pdb\n            pdb.post_mortem(tb)\n\n    if ipython:\n        from IPython.core import ultratb\n        sys.excepthook = ultratb.FormattedTB(mode='Verbose',\n                                             # color_scheme='Linux',\n                                             call_pdb=is_interactive())\n    else:\n        sys.excepthook = _datalad_pdb_excepthook\n\n\ndef ensure_dir(*args):\n    \"\"\"Make sure directory exists.\n\n    Joins the list of arguments to an os-specific path to the desired\n    directory and creates it, if it not exists yet.\n    \"\"\"\n    dirname = opj(*args)\n    if not exists(dirname):\n        os.makedirs(dirname)\n    return dirname\n\n\ndef updated(d, update):\n    \"\"\"Return a copy of the input with the 'update'\n\n    Primarily for updating dictionaries\n    \"\"\"\n    d = d.copy()\n    d.update(update)\n    return d\n\n\n_pwd_mode = None\n\n\ndef _switch_to_getcwd(msg, *args):\n    global _pwd_mode\n    _pwd_mode = 'cwd'\n    lgr.warning(\n        msg + \". From now on will be returning os.getcwd(). Directory\"\n               \" symlinks in the paths will be resolved\",\n        *args\n    )\n    # TODO:  we might want to mitigate by going through all flywheighted\n    # repos and tuning up their .paths to be resolved?\n\n\ndef getpwd():\n    \"\"\"Try to return a CWD without dereferencing possible symlinks\n\n    This function will try to use PWD environment variable to provide a current\n    working directory, possibly with some directories along the path being\n    symlinks to other directories.  Unfortunately, PWD is used/set only by the\n    shell and such functions as `os.chdir` and `os.getcwd` nohow use or modify\n    it, thus `os.getcwd()` returns path with links dereferenced.\n\n    While returning current working directory based on PWD env variable we\n    verify that the directory is the same as `os.getcwd()` after resolving all\n    symlinks.  If that verification fails, we fall back to always use\n    `os.getcwd()`.\n\n    Initial decision to either use PWD env variable or os.getcwd() is done upon\n    the first call of this function.\n    \"\"\"\n    global _pwd_mode\n    if _pwd_mode is None:\n        # we need to decide!\n        try:\n            pwd = os.environ['PWD']\n            if on_windows and pwd and pwd.startswith('/'):\n                # It should be a path from MSYS.\n                # - it might start with a drive letter or not\n                # - it seems to be \"illegal\" to have a single letter directories\n                #   under / path, i.e. if created - they aren't found\n                # - 'ln -s' does not fail to create a \"symlink\" but it just\n                # copies!\n                #   so we are not likely to need original PWD purpose on\n                # those systems\n                # Verdict:\n                _pwd_mode = 'cwd'\n            else:\n                _pwd_mode = 'PWD'\n        except KeyError:\n            _pwd_mode = 'cwd'\n\n    if _pwd_mode == 'cwd':\n        return os.getcwd()\n    elif _pwd_mode == 'PWD':\n        try:\n            cwd = os.getcwd()\n        except OSError as exc:\n            if \"o such file\" in str(exc):\n                # directory was removed but we promised to be robust and\n                # still report the path we might know since we are still in PWD\n                # mode\n                cwd = None\n            else:\n                raise\n        try:\n            pwd = os.environ['PWD']\n            pwd_real = op.realpath(pwd)\n            # This logic would fail to catch the case where chdir did happen\n            # to the directory where current PWD is pointing to, e.g.\n            # $> ls -ld $PWD\n            # lrwxrwxrwx 1 yoh yoh 5 Oct 11 13:27 /home/yoh/.tmp/tmp -> /tmp//\n            # hopa:~/.tmp/tmp\n            # $> python -c 'import os; os.chdir(\"/tmp\"); from datalad.utils import getpwd; print(getpwd(), os.getcwd())'\n            # ('/home/yoh/.tmp/tmp', '/tmp')\n            # but I guess that should not be too harmful\n            if cwd is not None and pwd_real != cwd:\n                _switch_to_getcwd(\n                    \"realpath of PWD=%s is %s whenever os.getcwd()=%s\",\n                    pwd, pwd_real, cwd\n                )\n                return cwd\n            return pwd\n        except KeyError:\n            _switch_to_getcwd(\"PWD env variable is no longer available\")\n            return cwd  # Must not happen, but may be someone\n                        # evil purges PWD from environ?\n    else:\n        raise RuntimeError(\n            \"Must have not got here. \"\n            \"pwd_mode must be either cwd or PWD. And it is now %r\" % (_pwd_mode,)\n        )\n\n\nclass chpwd(object):\n    \"\"\"Wrapper around os.chdir which also adjusts environ['PWD']\n\n    The reason is that otherwise PWD is simply inherited from the shell\n    and we have no ability to assess directory path without dereferencing\n    symlinks.\n\n    If used as a context manager it allows to temporarily change directory\n    to the given path\n    \"\"\"\n    def __init__(self, path, mkdir=False, logsuffix=''):\n\n        if path:\n            # PY35 has no auto-conversion of Path to str\n            path = str(path)\n            pwd = getpwd()\n            self._prev_pwd = pwd\n        else:\n            self._prev_pwd = None\n            return\n\n        if not isabs(path):\n            path = normpath(opj(pwd, path))\n        if not os.path.exists(path) and mkdir:\n            self._mkdir = True\n            os.mkdir(path)\n        else:\n            self._mkdir = False\n        lgr.debug(\"chdir %r -> %r %s\", self._prev_pwd, path, logsuffix)\n        os.chdir(path)  # for grep people -- ok, to chdir here!\n        os.environ['PWD'] = path\n\n    def __enter__(self):\n        # nothing more to do really, chdir was in the constructor\n        pass\n\n    def __exit__(self, exc_type, exc_val, exc_tb):\n        if self._prev_pwd:\n            # Need to use self.__class__ so this instance, if the entire\n            # thing mocked during the test, still would use correct chpwd\n            self.__class__(self._prev_pwd, logsuffix=\"(coming back)\")\n\n\ndef dlabspath(path, norm=False):\n    \"\"\"Symlinks-in-the-cwd aware abspath\n\n    os.path.abspath relies on os.getcwd() which would not know about symlinks\n    in the path\n\n    TODO: we might want to norm=True by default to match behavior of\n    os .path.abspath?\n    \"\"\"\n    if not isabs(path):\n        # if not absolute -- relative to pwd\n        path = opj(getpwd(), path)\n    return normpath(path) if norm else path\n\n\ndef with_pathsep(path):\n    \"\"\"Little helper to guarantee that path ends with /\"\"\"\n    return path + sep if not path.endswith(sep) else path\n\n\ndef get_path_prefix(path, pwd=None):\n    \"\"\"Get path prefix (for current directory)\n\n    Returns relative path to the topdir, if we are under topdir, and if not\n    absolute path to topdir.  If `pwd` is not specified - current directory\n    assumed\n    \"\"\"\n    pwd = pwd or getpwd()\n    path = dlabspath(path)\n    path_ = with_pathsep(path)\n    pwd_ = with_pathsep(pwd)\n    common = commonprefix((path_, pwd_))\n    if common.endswith(sep) and common in {path_, pwd_}:\n        # we are in subdir or above the path = use relative path\n        location_prefix = relpath(path, pwd)\n        # if benign \"here\" - cut off\n        if location_prefix in (curdir, curdir + sep):\n            location_prefix = ''\n        return location_prefix\n    else:\n        # just return absolute path\n        return path\n\n\ndef _get_normalized_paths(path, prefix):\n    if isabs(path) != isabs(prefix):\n        raise ValueError(\"Both paths must either be absolute or relative. \"\n                         \"Got %r and %r\" % (path, prefix))\n    path = with_pathsep(path)\n    prefix = with_pathsep(prefix)\n    return path, prefix\n\n\ndef path_startswith(path, prefix):\n    \"\"\"Return True if path starts with prefix path\n\n    Parameters\n    ----------\n    path: str\n    prefix: str\n    \"\"\"\n    path, prefix = _get_normalized_paths(path, prefix)\n    return path.startswith(prefix)\n\n\ndef path_is_subpath(path, prefix):\n    \"\"\"Return True if path is a subpath of prefix\n\n    It will return False if path == prefix.\n\n    Parameters\n    ----------\n    path: str\n    prefix: str\n    \"\"\"\n    path, prefix = _get_normalized_paths(path, prefix)\n    return (len(prefix) < len(path)) and path.startswith(prefix)\n\n\ndef knows_annex(path):\n    \"\"\"Returns whether at a given path there is information about an annex\n\n    It is just a thin wrapper around GitRepo.is_with_annex() classmethod\n    which also checks for `path` to exist first.\n\n    This includes actually present annexes, but also uninitialized ones, or\n    even the presence of a remote annex branch.\n    \"\"\"\n    from os.path import exists\n    if not exists(path):\n        lgr.debug(\"No annex: test path {0} doesn't exist\".format(path))\n        return False\n    from datalad.support.gitrepo import GitRepo\n    return GitRepo(path, init=False, create=False).is_with_annex()\n\n\n@contextmanager\ndef make_tempfile(content=None, wrapped=None, **tkwargs):\n    \"\"\"Helper class to provide a temporary file name and remove it at the end (context manager)\n\n    Parameters\n    ----------\n    mkdir : bool, optional (default: False)\n        If True, temporary directory created using tempfile.mkdtemp()\n    content : str or bytes, optional\n        Content to be stored in the file created\n    wrapped : function, optional\n        If set, function name used to prefix temporary file name\n    `**tkwargs`:\n        All other arguments are passed into the call to tempfile.mk{,d}temp(),\n        and resultant temporary filename is passed as the first argument into\n        the function t.  If no 'prefix' argument is provided, it will be\n        constructed using module and function names ('.' replaced with\n        '_').\n\n    To change the used directory without providing keyword argument 'dir' set\n    DATALAD_TESTS_TEMP_DIR.\n\n    Examples\n    --------\n        >>> from os.path import exists\n        >>> from datalad.utils import make_tempfile\n        >>> with make_tempfile() as fname:\n        ...    k = open(fname, 'w').write('silly test')\n        >>> assert not exists(fname)  # was removed\n\n        >>> with make_tempfile(content=\"blah\") as fname:\n        ...    assert open(fname).read() == \"blah\"\n    \"\"\"\n\n    if tkwargs.get('mkdir', None) and content is not None:\n        raise ValueError(\"mkdir=True while providing content makes no sense\")\n\n    tkwargs_ = get_tempfile_kwargs(tkwargs, wrapped=wrapped)\n\n    # if DATALAD_TESTS_TEMP_DIR is set, use that as directory,\n    # let mktemp handle it otherwise. However, an explicitly provided\n    # dir=... will override this.\n    mkdir = tkwargs_.pop('mkdir', False)\n\n    filename = {False: tempfile.mktemp,\n                True: tempfile.mkdtemp}[mkdir](**tkwargs_)\n    filename = realpath(filename)\n\n    if content:\n        with open(filename, 'w' + ('b' if isinstance(content, bytes) else '')) as f:\n            f.write(content)\n\n    if __debug__:\n        # TODO mkdir\n        lgr.debug('Created temporary thing named %s\"' % filename)\n    try:\n        yield filename\n    finally:\n        # glob here for all files with the same name (-suffix)\n        # would be useful whenever we requested .img filename,\n        # and function creates .hdr as well\n        lsuffix = len(tkwargs_.get('suffix', ''))\n        filename_ = lsuffix and filename[:-lsuffix] or filename\n        filenames = glob.glob(filename_ + '*')\n        if len(filename_) < 3 or len(filenames) > 5:\n            # For paranoid yoh who stepped into this already ones ;-)\n            lgr.warning(\"It is unlikely that it was intended to remove all\"\n                        \" files matching %r. Skipping\" % filename_)\n            return\n        for f in filenames:\n            try:\n                rmtemp(f)\n            except OSError:  # pragma: no cover\n                pass\n\n\ndef _path_(*p):\n    \"\"\"Given a path in POSIX\" notation, regenerate one in native to the env one\"\"\"\n    if on_windows:\n        return opj(*map(lambda x: opj(*x.split('/')), p))\n    else:\n        # Assume that all others as POSIX compliant so nothing to be done\n        return opj(*p)\n\n\ndef get_timestamp_suffix(time_=None, prefix='-'):\n    \"\"\"Return a time stamp (full date and time up to second)\n\n    primarily to be used for generation of log files names\n    \"\"\"\n    args = []\n    if time_ is not None:\n        if isinstance(time_, int):\n            time_ = time.gmtime(time_)\n        args.append(time_)\n    return time.strftime(prefix + TIMESTAMP_FMT, *args)\n\n\ndef get_logfilename(dspath, cmd='datalad'):\n    \"\"\"Return a filename to use for logging under a dataset/repository\n\n    directory would be created if doesn't exist, but dspath must exist\n    and be a directory\n    \"\"\"\n    assert(exists(dspath))\n    assert(isdir(dspath))\n    ds_logdir = ensure_dir(dspath, '.git', 'datalad', 'logs')  # TODO: use WEB_META_LOG whenever #789 merged\n    return opj(ds_logdir, 'crawl-%s.log' % get_timestamp_suffix())\n\n\ndef get_trace(edges, start, end, trace=None):\n    \"\"\"Return the trace/path to reach a node in a tree.\n\n    Parameters\n    ----------\n    edges : sequence(2-tuple)\n      The tree given by a sequence of edges (parent, child) tuples. The\n      nodes can be identified by any value and data type that supports\n      the '==' operation.\n    start :\n      Identifier of the start node. Must be present as a value in the parent\n      location of an edge tuple in order to be found.\n    end :\n      Identifier of the target/end node. Must be present as a value in the child\n      location of an edge tuple in order to be found.\n    trace : list\n      Mostly useful for recursive calls, and used internally.\n\n    Returns\n    -------\n    None or list\n      Returns a list with the trace to the target (the starts and the target\n      are not included in the trace, hence if start and end are directly connected\n      an empty list is returned), or None when no trace to the target can be found,\n      or start and end are identical.\n    \"\"\"\n    # the term trace is used to avoid confusion with a path in the sense\n    # of a filesystem path, but the analogy fits and nodes can be paths\n    if trace is None:\n        trace = []\n    if not edges:\n        raise ValueError(\"no edges given\")\n    for cand in edges:\n        cand_super, cand_sub = cand\n        if cand_sub in trace:\n            # only DAGs, skip any cyclic traces\n            continue\n        if trace and cand_super != trace[-1]:\n            # only consider edges that lead off the end of the trace\n            continue\n        if not trace and cand_super != start:\n            # we got nothing yet, and this edges is not matching the start\n            continue\n        if cand_sub == end:\n            return trace\n        # dive into potential subnodes\n        cand_trace = get_trace(\n            edges,\n            start,\n            end,\n            trace + [cand_sub])\n        if cand_trace:\n            return cand_trace\n    return None\n\n\ndef get_dataset_root(path):\n    \"\"\"Return the root of an existent dataset containing a given path\n\n    The root path is returned in the same absolute or relative form\n    as the input argument. If no associated dataset exists, or the\n    input path doesn't exist, None is returned.\n\n    If `path` is a symlink or something other than a directory, its\n    the root dataset containing its parent directory will be reported.\n    If none can be found, at a symlink at `path` is pointing to a\n    dataset, `path` itself will be reported as the root.\n    \"\"\"\n    suffix = '.git'\n    altered = None\n    if op.islink(path) or not op.isdir(path):\n        altered = path\n        path = op.dirname(path)\n    apath = op.abspath(path)\n    # while we can still go up\n    while op.split(apath)[1]:\n        if op.exists(op.join(path, suffix)):\n            return path\n        # new test path in the format we got it\n        path = op.normpath(op.join(path, os.pardir))\n        # no luck, next round\n        apath = op.abspath(path)\n    # if we applied dirname() at the top, we give it another go with\n    # the actual path, if it was itself a symlink, it could be the\n    # top-level dataset itself\n    if altered and op.exists(op.join(altered, suffix)):\n        return altered\n\n    return None\n\n\n# ATM used in datalad_crawler extension, so do not remove yet\ndef try_multiple(ntrials, exception, base, f, *args, **kwargs):\n    \"\"\"Call f multiple times making exponentially growing delay between the calls\"\"\"\n    from .dochelpers import exc_str\n    for trial in range(1, ntrials+1):\n        try:\n            return f(*args, **kwargs)\n        except exception as exc:\n            if trial == ntrials:\n                raise  # just reraise on the last trial\n            t = base ** trial\n            lgr.warning(\"Caught %s on trial #%d. Sleeping %f and retrying\",\n                        exc_str(exc), trial, t)\n            sleep(t)\n\n\n@optional_args\ndef try_multiple_dec(f, ntrials=None, duration=0.1, exceptions=None, increment_type=None):\n    \"\"\"Decorator to try function multiple times.\n\n    Main purpose is to decorate functions dealing with removal of files/directories\n    and which might need a few seconds to work correctly on Windows which takes\n    its time to release files/directories.\n\n    Parameters\n    ----------\n    ntrials: int, optional\n    duration: float, optional\n      Seconds to sleep before retrying.\n    increment_type: {None, 'exponential'}\n      Note that if it is exponential, duration should typically be > 1.0\n      so it grows with higher power\n\n    \"\"\"\n    from .dochelpers import exc_str\n    if not exceptions:\n        exceptions = (OSError, WindowsError, PermissionError) \\\n            if on_windows else OSError\n    if not ntrials:\n        # Life goes fast on proper systems, no need to delay it much\n        ntrials = 50 if on_windows else 3\n\n    assert increment_type in {None, 'exponential'}\n\n    @wraps(f)\n    def wrapped(*args, **kwargs):\n        t = duration\n        for trial in range(ntrials):\n            try:\n                return f(*args, **kwargs)\n            except exceptions as exc:\n                if increment_type == 'exponential':\n                    t = duration ** (trial + 1)\n                lgr.log(\n                    5,\n                    \"Caught %s on trial #%d. Sleeping %f and retrying\",\n                    exc_str(exc), trial, t)\n                if trial < ntrials - 1:\n                    sleep(t)\n                else:\n                    raise\n\n    return wrapped\n\n\n@try_multiple_dec\ndef unlink(f):\n    \"\"\"'Robust' unlink.  Would try multiple times\n\n    On windows boxes there is evidence for a latency of more than a second\n    until a file is considered no longer \"in-use\".\n    WindowsError is not known on Linux, and if IOError or any other\n    exception\n    is thrown then if except statement has WindowsError in it -- NameError\n    also see gh-2533\n    \"\"\"\n    # Check for open files\n    assert_no_open_files(f)\n    return os.unlink(f)\n\n\n@try_multiple_dec\ndef _rmtree(*args, **kwargs):\n    \"\"\"Just a helper to decorate shutil.rmtree.\n\n    rmtree defined above does more and ideally should not itself be decorated\n    since a recursive definition and does checks for open files inside etc -\n    might be too runtime expensive\n    \"\"\"\n    return shutil.rmtree(*args, **kwargs)\n\n\ndef slash_join(base, extension):\n    \"\"\"Join two strings with a '/', avoiding duplicate slashes\n\n    If any of the strings is None the other is returned as is.\n    \"\"\"\n    if extension is None:\n        return base\n    if base is None:\n        return extension\n    return '/'.join(\n        (base.rstrip('/'),\n         extension.lstrip('/')))\n\n\ndef safe_print(s):\n    \"\"\"Print with protection against UTF-8 encoding errors\"\"\"\n    # A little bit of dance to be able to test this code\n    print_f = getattr(builtins, \"print\")\n    try:\n        print_f(s)\n    except UnicodeEncodeError:\n        # failed to encode so let's do encoding while ignoring errors\n        # to print at least something\n        # explicit `or ascii` since somehow on buildbot it seemed to return None\n        s = s.encode(getattr(sys.stdout, 'encoding', 'ascii') or 'ascii', errors='ignore') \\\n            if hasattr(s, 'encode') else s\n        print_f(s.decode())\n\n#\n# IO Helpers\n#\n\ndef open_r_encdetect(fname, readahead=1000):\n    \"\"\"Return a file object in read mode with auto-detected encoding\n\n    This is helpful when dealing with files of unknown encoding.\n\n    Parameters\n    ----------\n    readahead: int, optional\n      How many bytes to read for guessing the encoding type.  If\n      negative - full file will be read\n    \"\"\"\n    from chardet import detect\n    import io\n    # read some bytes from the file\n    with open(fname, 'rb') as f:\n        head = f.read(readahead)\n    enc = detect(head)\n    denc = enc.get('encoding', None)\n    lgr.debug(\"Auto-detected encoding %s for file %s (confidence: %s)\",\n              denc,\n              fname,\n              enc.get('confidence', 'unknown'))\n    return io.open(fname, encoding=denc)\n\n\ndef read_csv_lines(fname, dialect=None, readahead=16384, **kwargs):\n    \"\"\"A generator of dict records from a CSV/TSV\n\n    Automatically guesses the encoding for each record to convert to UTF-8\n\n    Parameters\n    ----------\n    fname: str\n      Filename\n    dialect: str, optional\n      Dialect to specify to csv.reader. If not specified -- guessed from\n      the file, if fails to guess, \"excel-tab\" is assumed\n    readahead: int, optional\n      How many bytes to read from the file to guess the type\n    **kwargs\n      Passed to `csv.reader`\n    \"\"\"\n    import csv\n    if dialect is None:\n        with open(fname) as tsvfile:\n            # add robustness, use a sniffer\n            try:\n                dialect = csv.Sniffer().sniff(tsvfile.read(readahead))\n            except Exception as exc:\n                from .dochelpers import exc_str\n                lgr.warning(\n                    'Could not determine file-format, assuming TSV: %s',\n                    exc_str(exc)\n                )\n                dialect = 'excel-tab'\n\n    kw = dict(encoding='utf-8')\n    with open(fname, 'r', **kw) as tsvfile:\n        # csv.py doesn't do Unicode; encode temporarily as UTF-8:\n        csv_reader = csv.reader(\n            tsvfile,\n            dialect=dialect,\n            **kwargs\n        )\n        header = None\n        for row in csv_reader:\n            # decode UTF-8 back to Unicode, cell by cell:\n            row_unicode = map(ensure_unicode, row)\n            if header is None:\n                header = list(row_unicode)\n            else:\n                yield dict(zip(header, row_unicode))\n\n\ndef import_modules(modnames, pkg, msg=\"Failed to import {module}\", log=lgr.debug):\n    \"\"\"Helper to import a list of modules without failing if N/A\n\n    Parameters\n    ----------\n    modnames: list of str\n      List of module names to import\n    pkg: str\n      Package under which to import\n    msg: str, optional\n      Message template for .format() to log at DEBUG level if import fails.\n      Keys {module} and {package} will be provided and ': {exception}' appended\n    log: callable, optional\n      Logger call to use for logging messages\n    \"\"\"\n    from importlib import import_module\n    _globals = globals()\n    mods_loaded = []\n    if pkg and not pkg in sys.modules:\n        # with python 3.5.1 (ok with 3.5.5) somehow kept running into\n        #  Failed to import dlsub1: Parent module 'dltestm1' not loaded\n        # while running the test. Preloading pkg resolved the issue\n        import_module(pkg)\n    for modname in modnames:\n        try:\n            _globals[modname] = mod = import_module(\n                '.{}'.format(modname),\n                pkg)\n            mods_loaded.append(mod)\n        except Exception as exc:\n            from datalad.dochelpers import exc_str\n            log((msg + ': {exception}').format(\n                module=modname, package=pkg, exception=exc_str(exc)))\n    return mods_loaded\n\n\ndef import_module_from_file(modpath, pkg=None, log=lgr.debug):\n    \"\"\"Import provided module given a path\n\n    TODO:\n    - RF/make use of it in pipeline.py which has similar logic\n    - join with import_modules above?\n\n    Parameters\n    ----------\n    pkg: module, optional\n       If provided, and modpath is under pkg.__path__, relative import will be\n       used\n    \"\"\"\n    assert(modpath.endswith('.py'))  # for now just for .py files\n\n    log(\"Importing %s\" % modpath)\n\n    modname = basename(modpath)[:-3]\n    relmodpath = None\n    if pkg:\n        for pkgpath in pkg.__path__:\n            if path_is_subpath(modpath, pkgpath):\n                # for now relying on having .py extension -- assertion above\n                relmodpath = '.' + relpath(modpath[:-3], pkgpath).replace(sep, '.')\n                break\n\n    try:\n        if relmodpath:\n            from importlib import import_module\n            mod = import_module(relmodpath, pkg.__name__)\n        else:\n            dirname_ = dirname(modpath)\n            try:\n                sys.path.insert(0, dirname_)\n                mod = __import__(modname, level=0)\n            finally:\n                if dirname_ in sys.path:\n                    sys.path.pop(sys.path.index(dirname_))\n                else:\n                    log(\"Expected path %s to be within sys.path, but it was gone!\" % dirname_)\n    except Exception as e:\n        from datalad.dochelpers import exc_str\n        raise RuntimeError(\n            \"Failed to import module from %s: %s\" % (modpath, exc_str(e)))\n\n    return mod\n\n\ndef get_encoding_info():\n    \"\"\"Return a dictionary with various encoding/locale information\"\"\"\n    import sys, locale\n    from collections import OrderedDict\n    return OrderedDict([\n        ('default', sys.getdefaultencoding()),\n        ('filesystem', sys.getfilesystemencoding()),\n        ('locale.prefered', locale.getpreferredencoding()),\n    ])\n\n\ndef get_envvars_info():\n    from collections import OrderedDict\n    envs = []\n    for var, val in os.environ.items():\n        if (\n                var.startswith('PYTHON') or\n                var.startswith('LC_') or\n                var.startswith('GIT_') or\n                var in ('LANG', 'LANGUAGE', 'PATH')\n        ):\n            envs.append((var, val))\n    return OrderedDict(envs)\n\n\n# This class is modified from Snakemake (v5.1.4)\nclass SequenceFormatter(string.Formatter):\n    \"\"\"string.Formatter subclass with special behavior for sequences.\n\n    This class delegates formatting of individual elements to another\n    formatter object. Non-list objects are formatted by calling the\n    delegate formatter's \"format_field\" method. List-like objects\n    (list, tuple, set, frozenset) are formatted by formatting each\n    element of the list according to the specified format spec using\n    the delegate formatter and then joining the resulting strings with\n    a separator (space by default).\n    \"\"\"\n\n    def __init__(self, separator=\" \", element_formatter=string.Formatter(),\n                 *args, **kwargs):\n        self.separator = separator\n        self.element_formatter = element_formatter\n\n    def format_element(self, elem, format_spec):\n        \"\"\"Format a single element\n\n        For sequences, this is called once for each element in a\n        sequence. For anything else, it is called on the entire\n        object. It is intended to be overridden in subclases.\n        \"\"\"\n        return self.element_formatter.format_field(elem, format_spec)\n\n    def format_field(self, value, format_spec):\n        if isinstance(value, (list, tuple, set, frozenset)):\n            return self.separator.join(self.format_element(v, format_spec)\n                                       for v in value)\n        else:\n            return self.format_element(value, format_spec)\n\n\n# TODO: eventually we might want to make use of attr module\nclass File(object):\n    \"\"\"Helper for a file entry in the create_tree/@with_tree\n\n    It allows to define additional settings for entries\n    \"\"\"\n    def __init__(self, name, executable=False):\n        \"\"\"\n\n        Parameters\n        ----------\n        name : str\n          Name of the file\n        executable: bool, optional\n          Make it executable\n        \"\"\"\n        self.name = name\n        self.executable = executable\n\n    def __str__(self):\n        return self.name\n\n\ndef create_tree_archive(path, name, load, overwrite=False, archives_leading_dir=True):\n    \"\"\"Given an archive `name`, create under `path` with specified `load` tree\n    \"\"\"\n    from datalad.support.archives import compress_files\n    dirname = file_basename(name)\n    full_dirname = op.join(path, dirname)\n    os.makedirs(full_dirname)\n    create_tree(full_dirname, load, archives_leading_dir=archives_leading_dir)\n    # create archive\n    if archives_leading_dir:\n        compress_files([dirname], name, path=path, overwrite=overwrite)\n    else:\n        compress_files(list(map(op.basename, glob.glob(opj(full_dirname, '*')))),\n                       opj(op.pardir, name),\n                       path=op.join(path, dirname),\n                       overwrite=overwrite)\n    # remove original tree\n    rmtree(full_dirname)\n\n\ndef create_tree(path, tree, archives_leading_dir=True, remove_existing=False):\n    \"\"\"Given a list of tuples (name, load) create such a tree\n\n    if load is a tuple itself -- that would create either a subtree or an archive\n    with that content and place it into the tree if name ends with .tar.gz\n    \"\"\"\n    lgr.log(5, \"Creating a tree under %s\", path)\n    if not op.exists(path):\n        os.makedirs(path)\n\n    if isinstance(tree, dict):\n        tree = tree.items()\n\n    for file_, load in tree:\n        if isinstance(file_, File):\n            executable = file_.executable\n            name = file_.name\n        else:\n            executable = False\n            name = file_\n        full_name = op.join(path, name)\n        if remove_existing and op.lexists(full_name):\n            rmtree(full_name, chmod_files=True)\n        if isinstance(load, (tuple, list, dict)):\n            if name.endswith('.tar.gz') or name.endswith('.tar') or name.endswith('.zip'):\n                create_tree_archive(\n                    path, name, load,\n                    archives_leading_dir=archives_leading_dir)\n            else:\n                create_tree(\n                    full_name, load,\n                    archives_leading_dir=archives_leading_dir,\n                    remove_existing=remove_existing)\n        else:\n            open_func = open\n            if full_name.endswith('.gz'):\n                open_func = gzip.open\n            with open_func(full_name, \"wb\") as f:\n                f.write(ensure_bytes(load, 'utf-8'))\n        if executable:\n            os.chmod(full_name, os.stat(full_name).st_mode | stat.S_IEXEC)\n\n\ndef get_suggestions_msg(values, known, sep=\"\\n        \"):\n    \"\"\"Return a formatted string with suggestions for values given the known ones\n    \"\"\"\n    import difflib\n    suggestions = []\n    for value in ensure_list(values):  # might not want to do it if we change presentation below\n        suggestions += difflib.get_close_matches(value, known)\n    suggestions = unique(suggestions)\n    msg = \"Did you mean any of these?\"\n    if suggestions:\n        if '\\n' in sep:\n            # if separator includes new line - we add entire separator right away\n            msg += sep\n        else:\n            msg += ' '\n        return msg + \"%s\\n\" % sep.join(suggestions)\n    return ''\n\n\ndef bytes2human(n, format='%(value).1f %(symbol)sB'):\n    \"\"\"\n    Convert n bytes into a human readable string based on format.\n    symbols can be either \"customary\", \"customary_ext\", \"iec\" or \"iec_ext\",\n    see: http://goo.gl/kTQMs\n\n      >>> from datalad.utils import bytes2human\n      >>> bytes2human(1)\n      '1.0 B'\n      >>> bytes2human(1024)\n      '1.0 KB'\n      >>> bytes2human(1048576)\n      '1.0 MB'\n      >>> bytes2human(1099511627776127398123789121)\n      '909.5 YB'\n\n      >>> bytes2human(10000, \"%(value).1f %(symbol)s/sec\")\n      '9.8 K/sec'\n\n      >>> # precision can be adjusted by playing with %f operator\n      >>> bytes2human(10000, format=\"%(value).5f %(symbol)s\")\n      '9.76562 K'\n\n    Taken from: http://goo.gl/kTQMs and subsequently simplified\n    Original Author: Giampaolo Rodola' <g.rodola [AT] gmail [DOT] com>\n    License: MIT\n    \"\"\"\n    n = int(n)\n    if n < 0:\n        raise ValueError(\"n < 0\")\n    symbols = ('', 'K', 'M', 'G', 'T', 'P', 'E', 'Z', 'Y')\n    prefix = {}\n    for i, s in enumerate(symbols[1:]):\n        prefix[s] = 1 << (i + 1) * 10\n    for symbol in reversed(symbols[1:]):\n        if n >= prefix[symbol]:\n            value = float(n) / prefix[symbol]\n            return format % locals()\n    return format % dict(symbol=symbols[0], value=n)\n\n\ndef quote_cmdlinearg(arg):\n    \"\"\"Perform platform-appropriate argument quoting\"\"\"\n    # https://stackoverflow.com/a/15262019\n    return '\"{}\"'.format(\n        arg.replace('\"', '\"\"')\n    ) if on_windows else shlex_quote(arg)\n\n\ndef split_cmdline(s):\n    \"\"\"Perform platform-appropriate command line splitting.\n\n    Identical to `shlex.split()` on non-windows platforms.\n\n    Modified from https://stackoverflow.com/a/35900070\n    \"\"\"\n    if not on_windows:\n        return shlex_split(s)\n\n    # the rest is for windows\n    RE_CMD_LEX = r'''\"((?:\"\"|\\\\[\"\\\\]|[^\"])*)\"?()|(\\\\\\\\(?=\\\\*\")|\\\\\")|(&&?|\\|\\|?|\\d?>|[<])|([^\\s\"&|<>]+)|(\\s+)|(.)'''\n\n    args = []\n    accu = None   # collects pieces of one arg\n    for qs, qss, esc, pipe, word, white, fail in re.findall(RE_CMD_LEX, s):\n        if word:\n            pass   # most frequent\n        elif esc:\n            word = esc[1]\n        elif white or pipe:\n            if accu is not None:\n                args.append(accu)\n            if pipe:\n                args.append(pipe)\n            accu = None\n            continue\n        elif fail:\n            raise ValueError(\"invalid or incomplete shell string\")\n        elif qs:\n            word = qs.replace('\\\\\"', '\"').replace('\\\\\\\\', '\\\\')\n            if platform == 0:\n                word = word.replace('\"\"', '\"')\n        else:\n            word = qss   # may be even empty; must be last\n\n        accu = (accu or '') + word\n\n    if accu is not None:\n        args.append(accu)\n\n    return args\n\n\ndef get_wrapped_class(wrapped):\n    \"\"\"Determine the command class a wrapped __call__ belongs to\"\"\"\n    mod = sys.modules[wrapped.__module__]\n    command_class_name = wrapped.__qualname__.split('.')[-2]\n    _func_class = mod.__dict__[command_class_name]\n    lgr.debug(\"Determined class of decorated function: %s\", _func_class)\n    return _func_class\n\n\n# TODO whenever we feel ready for English kill the compat block below\nassure_tuple_or_list = ensure_tuple_or_list\nassure_iter = ensure_iter\nassure_list = ensure_list\nassure_list_from_str = ensure_list_from_str\nassure_dict_from_str = ensure_dict_from_str\nassure_bytes = ensure_bytes\nassure_unicode = ensure_unicode\nassure_bool = ensure_bool\nassure_dir = ensure_dir\n\n\nlgr.log(5, \"Done importing datalad.utils\")\n"}
A user will ask you to solve a task. You should first draft your thinking process (inner monologue). Then, generate the solution.

Your response format must follow the template below:
<think>
Your thoughts or/and draft, like working through an exercise on scratch paper. Be as casual and as long as you want until you are confident to generate a correct solution.
</think>
<solution>
Final solution presented to the user.
</solution>
system
We are currently solving the following issue within our repository. Here is the issue text:
--- BEGIN ISSUE ---
**Analysis:**

- **Key Parts from Commit Details:**
  - **Commit Message:** Enhances `shortened_repr` to inform how many characters are not shown.
  - **Changes:** Replaces `...` with `++??? chars++` in the middle of the representation, showing the trailer of the original `repr`.
  - **Test Change:** The `test_auto_repr` was failing due to the old representation format and now passes with the new format.

- **Main Problem Highlighted by Test Results:**
  - Before the commit, the `shortened_repr` function did not indicate the number of truncated characters, leading to failing tests that expected the new format.

- **Expected Behavior:**
  - The `shortened_repr` should display the number of characters omitted and include a snippet from the end of the original representation, especially useful for complex structures like lists or tuples.

- **Actual Behavior or Error Message:**
  - The function only appends `...` at the end, without indicating the number of hidden characters, causing discrepancies in representations and test failures.

- **Issue Description:**
  - The `shortened_repr` function lacks clarity in representing truncated strings or data structures by not indicating the number of omitted characters. This leads to confusion when inspecting complex objects and causes related tests to fail due to unexpected representation formats.

---

[ISSUE]
**Title:** `shortened_repr` Does Not Indicate Number of Truncated Characters

**Description:**
When using the `shortened_repr` function on lengthy representations of objects, it simply appends `...` to indicate truncation. This makes it unclear how many characters are omitted, which is particularly problematic for complex data structures like lists or tuples where understanding the end of the structure is important.

**Example Code:**
```python
def shortened_repr(value, l=30):
    if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):
        value_repr = repr(value)
        if not value_repr.startswith('<') and len(value_repr) > l:
            value_repr = f"<<{value_repr[:l - 8]}...>>"
    return value_repr

class WithoutReprClass:
    def __init__(self):
        self.a = 'does not matter'

@auto_repr
class Buga:
    def __init__(self):
        self.a = 1
        self.b = list(range(100))
        self.c = WithoutReprClass()
        self._c = 'protect me'

def example():
    print(repr(Buga()))
```

**Expected Behavior:**
The `shortened_repr` function should display the number of characters that have been truncated and include a snippet from the end of the original representation. For example, a list should show the beginning elements, indicate how many characters are hidden, and then show the last few elements to provide better context.

**Actual Behavior:**
The function only appends `...` without indicating the number of hidden characters, resulting in representations like:
```
buga(a=1, b=<<[0, 1, 2, 3, 4, 5, 6, ...>>, c=<WithoutReprClass>)
```
This makes it difficult to understand the extent of the truncation and the structure of the represented object.

[/ISSUE]
--- END ISSUE ---

Below are some code segments, each from a relevant file. One or more of these files may contain bugs.

--- BEGIN FILE ---
```
### datalad/utils.py
# emacs: -*- mode: python; py-indent-offset: 4; tab-width: 4; indent-tabs-mode: nil -*-
# ex: set sts=4 ts=4 sw=4 noet:
# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
#
#   See COPYING file distributed along with the datalad package for the
#   copyright and license terms.
#
# ## ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##

import collections
import hashlib
import re
import builtins
import time

try:
    from collections.abc import Callable
except ImportError:  # Python <= 3.3
    from collections import Callable

import logging
import shutil
import os
import sys
import tempfile
import platform
import gc
import glob
import gzip
import string
import warnings
import wrapt

from copy import copy as shallow_copy
from contextlib import contextmanager
from functools import wraps
from time import sleep
import inspect
from itertools import tee

import os.path as op
from os.path import sep as dirsep
from os.path import commonprefix
from os.path import curdir, basename, exists, realpath, islink, join as opj
from os.path import isabs, normpath, expandvars, expanduser, abspath, sep
from os.path import isdir
from os.path import relpath
from os.path import stat
from os.path import dirname
from os.path import split as psplit
import posixpath

from shlex import (
    quote as shlex_quote,
    split as shlex_split,
)

# from datalad.dochelpers import get_docstring_split
from datalad.consts import TIMESTAMP_FMT


unicode_srctypes = str, bytes


lgr = logging.getLogger("datalad.utils")

lgr.log(5, "Importing datalad.utils")
#
# Some useful variables
#
platform_system = platform.system().lower()
on_windows = platform_system == 'windows'
on_osx = platform_system == 'darwin'
on_linux = platform_system == 'linux'
on_msys_tainted_paths = on_windows \
                        and 'MSYS_NO_PATHCONV' not in os.environ \
                        and os.environ.get('MSYSTEM', '')[:4] in ('MSYS', 'MING')


def get_linux_distribution():
    """Compatibility wrapper for {platform,distro}.linux_distribution().
    """
    if hasattr(platform, "linux_distribution"):
        # Use deprecated (but faster) method if it's available.
        with warnings.catch_warnings():
            warnings.filterwarnings("ignore", category=DeprecationWarning)
            result = platform.linux_distribution()
    else:
        import distro  # We require this for Python 3.8 and above.
        result = distro.linux_distribution(full_distribution_name=False)
    return result


try:
    linux_distribution_name, linux_distribution_release \
        = get_linux_distribution()[:2]
    on_debian_wheezy = on_linux \
                       and linux_distribution_name == 'debian' \
                       and linux_distribution_release.startswith('7.')
except:  # pragma: no cover
    # MIH: IndexError?
    on_debian_wheezy = False
    linux_distribution_name = linux_distribution_release = None

# Maximal length of cmdline string
# Query the system and use hardcoded "knowledge" if None
# probably   getconf ARG_MAX   might not be available
# The last one would be the most conservative/Windows
CMD_MAX_ARG_HARDCODED = 2097152 if on_linux else 262144 if on_osx else 32767
try:
    CMD_MAX_ARG = os.sysconf('SC_ARG_MAX')
    assert CMD_MAX_ARG > 0
    if sys.version_info[:2] == (3, 4):
        # workaround for some kind of a bug which comes up with python 3.4
        # see https://github.com/datalad/datalad/issues/3150
        CMD_MAX_ARG = min(CMD_MAX_ARG, CMD_MAX_ARG_HARDCODED)
except Exception as exc:
    # ATM (20181005) SC_ARG_MAX available only on POSIX systems
    # so exception would be thrown e.g. on Windows, or
    # somehow during Debian build for nd14.04 it is coming up with -1:
    # https://github.com/datalad/datalad/issues/3015
    CMD_MAX_ARG = CMD_MAX_ARG_HARDCODED
    lgr.debug(
        "Failed to query or got useless SC_ARG_MAX sysconf, "
        "will use hardcoded value: %s", exc)
# Even with all careful computations we do, due to necessity to account for
# environment and what not, we still could not figure out "exact" way to
# estimate it, but it was shown that 300k safety margin on linux was sufficient.
# https://github.com/datalad/datalad/pull/2977#issuecomment-436264710
# 300k is ~15%, so to be safe, and for paranoid us we will just use up to 50%
# of the length for "safety margin".  We might probably still blow due to
# env vars, unicode, etc...  so any hard limit imho is not a proper solution
CMD_MAX_ARG = int(0.5 * CMD_MAX_ARG)
lgr.debug(
    "Maximal length of cmdline string (adjusted for safety margin): %d",
    CMD_MAX_ARG)

#
# Little helpers
#

# `getargspec` has been deprecated in Python 3.
if hasattr(inspect, "getfullargspec"):
    ArgSpecFake = collections.namedtuple(
        "ArgSpecFake", ["args", "varargs", "keywords", "defaults"])

    def getargspec(func):
        return ArgSpecFake(*inspect.getfullargspec(func)[:4])
else:
    getargspec = inspect.getargspec


def get_func_kwargs_doc(func):
    """ Provides args for a function

    Parameters
    ----------
    func: str
      name of the function from which args are being requested

    Returns
    -------
    list
      of the args that a function takes in
    """
    return getargspec(func)[0]

    # TODO: format error message with descriptions of args
    # return [repr(dict(get_docstring_split(func)[1]).get(x)) for x in getargspec(func)[0]]


def any_re_search(regexes, value):
    """Return if any of regexes (list or str) searches succesfully for value"""
    for regex in ensure_tuple_or_list(regexes):
        if re.search(regex, value):
            return True
    return False


def not_supported_on_windows(msg=None):
    """A little helper to be invoked to consistently fail whenever functionality is
    not supported (yet) on Windows
    """
    if on_windows:
        raise NotImplementedError("This functionality is not yet implemented for Windows OS"
                                  + (": %s" % msg if msg else ""))


def shortened_repr(value, l=30):
    try:
        if hasattr(value, '__repr__') and (value.__repr__ is not object.__repr__):
            value_repr = repr(value)
            if not value_repr.startswith('<') and len(value_repr) > l:
                value_repr = "<<%s...>>" % (value_repr[:l - 8])
            elif value_repr.startswith('<') and value_repr.endswith('>') and ' object at 0x':
                raise ValueError("I hate those useless long reprs")
        else:
            raise ValueError("gimme class")
    except Exception as e:
        value_repr = "<%s>" % value.__class__.__name__.split('.')[-1]
    return value_repr


def __auto_repr__(obj):
    attr_names = tuple()
    if hasattr(obj, '__dict__'):
        attr_names += tuple(obj.__dict__.keys())
    if hasattr(obj, '__slots__'):
        attr_names += tuple(obj.__slots__)

    items = []
    for attr in sorted(set(attr_names)):
        if attr.startswith('_'):
            continue
        value = getattr(obj, attr)
        # TODO:  should we add this feature to minimize some talktative reprs
        # such as of URL?
        #if value is None:
        #    continue
        items.append("%s=%s" % (attr, shortened_repr(value)))

    return "%s(%s)" % (obj.__class__.__name__, ', '.join(items))


def auto_repr(cls):
    """Decorator for a class to assign it an automagic quick and dirty __repr__

    It uses public class attributes to prepare repr of a class

    Original idea: http://stackoverflow.com/a/27799004/1265472
    """

    cls.__repr__ = __auto_repr__
    return cls


def _is_stream_tty(stream):
    try:
        # TODO: check on windows if hasattr check would work correctly and
        # add value:
        return stream.isatty()
    except ValueError as exc:
        # Who knows why it is a ValueError, but let's try to be specific
        # If there is a problem with I/O - non-interactive, otherwise reraise
        if "I/O" in str(exc):
            return False
        raise


def is_interactive():
    """Return True if all in/outs are open and tty.

    Note that in a somewhat abnormal case where e.g. stdin is explicitly
    closed, and any operation on it would raise a
    `ValueError("I/O operation on closed file")` exception, this function
    would just return False, since the session cannot be used interactively.
    """
    return all(_is_stream_tty(s) for s in (sys.stdin, sys.stdout, sys.stderr))


def get_ipython_shell():
    """Detect if running within IPython and returns its `ip` (shell) object

    Returns None if not under ipython (no `get_ipython` function)
    """
    try:
        return get_ipython()
    except NameError:
        return None


def md5sum(filename):
    """Compute an MD5 sum for the given file
    """
    from datalad.support.digests import Digester
    return Digester(digests=['md5'])(filename)['md5']


def sorted_files(dout):
    """Return a (sorted) list of files under dout
    """
    return sorted(sum([[opj(r, f)[len(dout) + 1:] for f in files]
                       for r, d, files in os.walk(dout)
                       if not '.git' in r], []))

_encoded_dirsep = r'\\'  if on_windows else r'/'
_VCS_REGEX = r'%s\.(?:git|gitattributes|svn|bzr|hg)(?:%s|$)' % (
    _encoded_dirsep, _encoded_dirsep)
_DATALAD_REGEX = r'%s\.(?:datalad)(?:%s|$)' % (
    _encoded_dirsep, _encoded_dirsep)


def find_files(regex, topdir=curdir, exclude=None, exclude_vcs=True, exclude_datalad=False, dirs=False):
    """Generator to find files matching regex

    Parameters
    ----------
    regex: basestring
    exclude: basestring, optional
      Matches to exclude
    exclude_vcs:
      If True, excludes commonly known VCS subdirectories.  If string, used
      as regex to exclude those files (regex: `%r`)
    exclude_datalad:
      If True, excludes files known to be datalad meta-data files (e.g. under
      .datalad/ subdirectory) (regex: `%r`)
    topdir: basestring, optional
      Directory where to search
    dirs: bool, optional
      Whether to match directories as well as files
    """
    for dirpath, dirnames, filenames in os.walk(topdir):
        names = (dirnames + filenames) if dirs else filenames
        # TODO: might want to uniformize on windows to use '/'
        paths = (opj(dirpath, name) for name in names)
        for path in filter(re.compile(regex).search, paths):
            path = path.rstrip(dirsep)
            if exclude and re.search(exclude, path):
                continue
            if exclude_vcs and re.search(_VCS_REGEX, path):
                continue
            if exclude_datalad and re.search(_DATALAD_REGEX, path):
                continue
            yield path
find_files.__doc__ %= (_VCS_REGEX, _DATALAD_REGEX)


def expandpath(path, force_absolute=True):
    """Expand all variables and user handles in a path.

    By default return an absolute path
    """
    path = expandvars(expanduser(path))
    if force_absolute:
        path = abspath(path)
    return path


def posix_relpath(path, start=None):
    """Behave like os.path.relpath, but always return POSIX paths...

    on any platform."""
    # join POSIX style
    return posixpath.join(
        # split and relpath native style
        # python2.7 ntpath implementation of relpath cannot handle start=None
        *psplit(
            relpath(path, start=start if start is not None else '')))


def is_explicit_path(path):
    """Return whether a path explicitly points to a location

    Any absolute path, or relative path starting with either '../' or
    './' is assumed to indicate a location on the filesystem. Any other
    path format is not considered explicit."""
    path = expandpath(path, force_absolute=False)
    return isabs(path) \
        or path.startswith(os.curdir + os.sep) \
        or path.startswith(os.pardir + os.sep)


# handle this dance once, and import pathlib from here
# in all other places

from pathlib import (
    Path,
    PurePath,
    PurePosixPath,
)


def rotree(path, ro=True, chmod_files=True):
    """To make tree read-only or writable

    Parameters
    ----------
    path : string
      Path to the tree/directory to chmod
    ro : bool, optional
      Whether to make it R/O (default) or RW
    chmod_files : bool, optional
      Whether to operate also on files (not just directories)
    """
    if ro:
        chmod = lambda f: os.chmod(f, os.stat(f).st_mode & ~stat.S_IWRITE)
    else:
        chmod = lambda f: os.chmod(f, os.stat(f).st_mode | stat.S_IWRITE | stat.S_IREAD)

    for root, dirs, files in os.walk(path, followlinks=False):
        if chmod_files:
            for f in files:
                fullf = opj(root, f)
                # might be the "broken" symlink which would fail to stat etc
                if exists(fullf):
                    chmod(fullf)
        chmod(root)


def rmtree(path, chmod_files='auto', children_only=False, *args, **kwargs):
    """To remove git-annex .git it is needed to make all files and directories writable again first

    Parameters
    ----------
    chmod_files : string or bool, optional
       Whether to make files writable also before removal.  Usually it is just
       a matter of directories to have write permissions.
       If 'auto' it would chmod files on windows by default
    children_only : bool, optional
       If set, all files and subdirectories would be removed while the path
       itself (must be a directory) would be preserved
    `*args` :
    `**kwargs` :
       Passed into shutil.rmtree call
    """
    # Give W permissions back only to directories, no need to bother with files
    if chmod_files == 'auto':
        chmod_files = on_windows
    # TODO:  yoh thinks that if we could quickly check our Flyweight for
    #        repos if any of them is under the path, and could call .precommit
    #        on those to possibly stop batched processes etc, we did not have
    #        to do it on case by case
    # Check for open files
    assert_no_open_files(path)

    if children_only:
        if not os.path.isdir(path):
            raise ValueError("Can remove children only of directories")
        for p in os.listdir(path):
            rmtree(op.join(path, p))
        return
    if not (os.path.islink(path) or not os.path.isdir(path)):
        rotree(path, ro=False, chmod_files=chmod_files)
        _rmtree(path, *args, **kwargs)
    else:
        # just remove the symlink
        unlink(path)


def rmdir(path, *args, **kwargs):
    """os.rmdir with our optional checking for open files"""
    assert_no_open_files(path)
    os.rmdir(path)


def get_open_files(path, log_open=False):
    """Get open files under a path

    Parameters
    ----------
    path : str
      File or directory to check for open files under
    log_open : bool or int
      If set - logger level to use

    Returns
    -------
    dict
      path : pid

    """
    # Original idea: https://stackoverflow.com/a/11115521/1265472
    import psutil
    files = {}
    # since the ones returned by psutil would not be aware of symlinks in the
    # path we should also get realpath for path
    path = realpath(path)
    for proc in psutil.process_iter():
        try:
            open_paths = [p.path for p in proc.open_files()] + [proc.cwd()]
            for p in open_paths:
                # note: could be done more efficiently so we do not
                # renormalize path over and over again etc
                if path_startswith(p, path):
                    files[p] = proc
        # Catch a race condition where a process ends
        # before we can examine its files
        except psutil.NoSuchProcess:
            pass
        except psutil.AccessDenied:
            pass

    if files and log_open:
        lgr.log(log_open, "Open files under %s: %s", path, files)
    return files


_assert_no_open_files_cfg = os.environ.get('DATALAD_ASSERT_NO_OPEN_FILES')
if _assert_no_open_files_cfg:
    def assert_no_open_files(path):
        files = get_open_files(path, log_open=40)
        if _assert_no_open_files_cfg == 'assert':
            assert not files
        elif files:
            if _assert_no_open_files_cfg == 'pdb':
                import pdb
                pdb.set_trace()
            elif _assert_no_open_files_cfg == 'epdb':
                import epdb
                epdb.serve()
            pass
        # otherwise we would just issue that error message in the log
else:
    def assert_no_open_files(*args, **kwargs):
        pass


def rmtemp(f, *args, **kwargs):
    """Wrapper to centralize removing of temp files so we could keep them around

    It will not remove the temporary file/directory if DATALAD_TESTS_TEMP_KEEP
    environment variable is defined
    """
    if not os.environ.get('DATALAD_TESTS_TEMP_KEEP'):
        if not os.path.lexists(f):
            lgr.debug("Path %s does not exist, so can't be removed" % f)
            return
        lgr.log(5, "Removing temp file: %s" % f)
        # Can also be a directory
        if os.path.isdir(f):
            rmtree(f, *args, **kwargs)
        else:
            unlink(f)
    else:
        lgr.info("Keeping temp file: %s" % f)


def file_basename(name, return_ext=False):
    """
    Strips up to 2 extensions of length up to 4 characters and starting with alpha
    not a digit, so we could get rid of .tar.gz etc
    """
    bname = basename(name)
    fbname = re.sub(r'(\.[a-zA-Z_]\S{1,4}){0,2}$', '', bname)
    if return_ext:
        return fbname, bname[len(fbname) + 1:]
    else:
        return fbname


def escape_filename(filename):
    """Surround filename in "" and escape " in the filename
    """
    filename = filename.replace('"', r'\"').replace('`', r'\`')
    filename = '"%s"' % filename
    return filename


def encode_filename(filename):
    """Encode unicode filename
    """
    if isinstance(filename, str):
        return filename.encode(sys.getfilesystemencoding())
    else:
        return filename


def decode_input(s):
    """Given input string/bytes, decode according to stdin codepage (or UTF-8)
    if not defined

    If fails -- issue warning and decode allowing for errors
    being replaced
    """
    if isinstance(s, str):
        return s
    else:
        encoding = sys.stdin.encoding or 'UTF-8'
        try:
            return s.decode(encoding)
        except UnicodeDecodeError as exc:
            lgr.warning(
                "Failed to decode input string using %s encoding. "
                "Decoding allowing for errors", encoding)
            return s.decode(encoding, errors='replace')


if on_windows:
    def lmtime(filepath, mtime):
        """Set mtime for files.  On Windows a merely adapter to os.utime
        """
        os.utime(filepath, (time.time(), mtime))
else:
    def lmtime(filepath, mtime):
        """Set mtime for files, while not de-referencing symlinks.

        To overcome absence of os.lutime

        Works only on linux and OSX ATM
        """
        from .cmd import Runner
        # convert mtime to format touch understands [[CC]YY]MMDDhhmm[.SS]
        smtime = time.strftime("%Y%m%d%H%M.%S", time.localtime(mtime))
        lgr.log(3, "Setting mtime for %s to %s == %s", filepath, mtime, smtime)
        Runner().run(['touch', '-h', '-t', '%s' % smtime, filepath])
        rfilepath = realpath(filepath)
        if islink(filepath) and exists(rfilepath):
            # trust noone - adjust also of the target file
            # since it seemed like downloading under OSX (was it using curl?)
            # didn't bother with timestamps
            lgr.log(3, "File is a symlink to %s Setting mtime for it to %s",
                    rfilepath, mtime)
            os.utime(rfilepath, (time.time(), mtime))
        # doesn't work on OSX
        # Runner().run(['touch', '-h', '-d', '@%s' % mtime, filepath])


def ensure_tuple_or_list(obj):
    """Given an object, wrap into a tuple if not list or tuple
    """
    if isinstance(obj, (list, tuple)):
        return obj
    return (obj,)


def ensure_iter(s, cls, copy=False, iterate=True):
    """Given not a list, would place it into a list. If None - empty list is returned

    Parameters
    ----------
    s: list or anything
    cls: class
      Which iterable class to ensure
    copy: bool, optional
      If correct iterable is passed, it would generate its shallow copy
    iterate: bool, optional
      If it is not a list, but something iterable (but not a str)
      iterate over it.
    """

    if isinstance(s, cls):
        return s if not copy else shallow_copy(s)
    elif isinstance(s, str):
        return cls((s,))
    elif iterate and hasattr(s, '__iter__'):
        return cls(s)
    elif s is None:
        return cls()
    else:
        return cls((s,))


def ensure_list(s, copy=False, iterate=True):
    """Given not a list, would place it into a list. If None - empty list is returned

    Parameters
    ----------
    s: list or anything
    copy: bool, optional
      If list is passed, it would generate a shallow copy of the list
    iterate: bool, optional
      If it is not a list, but something iterable (but not a str)
      iterate over it.
    """
    return ensure_iter(s, list, copy=copy, iterate=iterate)


def ensure_list_from_str(s, sep='\n'):
    """Given a multiline string convert it to a list of return None if empty

    Parameters
    ----------
    s: str or list
    """

    if not s:
        return None

    if isinstance(s, list):
        return s
    return s.split(sep)


def ensure_dict_from_str(s, **kwargs):
    """Given a multiline string with key=value items convert it to a dictionary

    Parameters
    ----------
    s: str or dict

    Returns None if input s is empty
    """

    if not s:
        return None

    if isinstance(s, dict):
        return s

    out = {}
    for value_str in ensure_list_from_str(s, **kwargs):
        if '=' not in value_str:
            raise ValueError("{} is not in key=value format".format(repr(value_str)))
        k, v = value_str.split('=', 1)
        if k in out:
            err = "key {} was already defined in {}, but new value {} was provided".format(k, out, v)
            raise ValueError(err)
        out[k] = v
    return out


def ensure_bytes(s, encoding='utf-8'):
    """Convert/encode unicode string to bytes.

    If `s` isn't a string, return it as is.

    Parameters
    ----------
    encoding: str, optional
      Encoding to use.  "utf-8" is the default
    """
    if not isinstance(s, str):
        return s
    return s.encode(encoding)


def ensure_unicode(s, encoding=None, confidence=None):
    """Convert/decode bytestring to unicode.

    If `s` isn't a bytestring, return it as is.

    Parameters
    ----------
    encoding: str, optional
      Encoding to use.  If None, "utf-8" is tried, and then if not a valid
      UTF-8, encoding will be guessed
    confidence: float, optional
      A value between 0 and 1, so if guessing of encoding is of lower than
      specified confidence, ValueError is raised
    """
    if not isinstance(s, bytes):
        return s
    if encoding is None:
        # Figure out encoding, defaulting to 'utf-8' which is our common
        # target in contemporary digital society
        try:
            return s.decode('utf-8')
        except UnicodeDecodeError as exc:
            from .dochelpers import exc_str
            lgr.debug("Failed to decode a string as utf-8: %s", exc_str(exc))
        # And now we could try to guess
        from chardet import detect
        enc = detect(s)
        denc = enc.get('encoding', None)
        if denc:
            denc_confidence = enc.get('confidence', 0)
            if confidence is not None and  denc_confidence < confidence:
                raise ValueError(
                    "Failed to auto-detect encoding with high enough "
                    "confidence. Highest confidence was %s for %s"
                    % (denc_confidence, denc)
                )
            return s.decode(denc)
        else:
            raise ValueError(
                "Could not decode value as utf-8, or to guess its encoding: %s"
                % repr(s)
            )
    else:
        return s.decode(encoding)


def ensure_bool(s):
    """Convert value into boolean following convention for strings

    to recognize on,True,yes as True, off,False,no as False
    """
    if isinstance(s, str):
        if s.isdigit():
            return bool(int(s))
        sl = s.lower()
        if sl in {'y', 'yes', 'true', 'on'}:
            return True
        elif sl in {'n', 'no', 'false', 'off'}:
            return False
        else:
            raise ValueError("Do not know how to treat %r as a boolean" % s)
    return bool(s)


def as_unicode(val, cast_types=object):
    """Given an arbitrary value, would try to obtain unicode value of it
    
    For unicode it would return original value, for python2 str or python3
    bytes it would use ensure_unicode, for None - an empty (unicode) string,
    and for any other type (see `cast_types`) - would apply the unicode 
    constructor.  If value is not an instance of `cast_types`, TypeError
    is thrown
    
    Parameters
    ----------
    cast_types: type
      Which types to cast to unicode by providing to constructor
    """
    if val is None:
        return u''
    elif isinstance(val, str):
        return val
    elif isinstance(val, unicode_srctypes):
        return ensure_unicode(val)
    elif isinstance(val, cast_types):
        return str(val)
    else:
        raise TypeError(
            "Value %r is not of any of known or provided %s types"
            % (val, cast_types))


def unique(seq, key=None, reverse=False):
    """Given a sequence return a list only with unique elements while maintaining order

    This is the fastest solution.  See
    https://www.peterbe.com/plog/uniqifiers-benchmark
    and
    http://stackoverflow.com/a/480227/1265472
    for more information.
    Enhancement -- added ability to compare for uniqueness using a key function

    Parameters
    ----------
    seq:
      Sequence to analyze
    key: callable, optional
      Function to call on each element so we could decide not on a full
      element, but on its member etc
    reverse: bool, optional
      If True, uniqueness checked in the reverse order, so that the later ones
      will take the order
    """
    seen = set()
    seen_add = seen.add

    trans = reversed if reverse else lambda x: x

    if not key:
        out = [x for x in trans(seq) if not (x in seen or seen_add(x))]
    else:
        # OPT: could be optimized, since key is called twice, but for our cases
        # should be just as fine
        out = [x for x in trans(seq) if not (key(x) in seen or seen_add(key(x)))]

    return out[::-1] if reverse else out


def all_same(items):
    """Quick check if all items are the same.

    Identical to a check like len(set(items)) == 1 but
    should be more efficient while working on generators, since would
    return False as soon as any difference detected thus possibly avoiding
    unnecessary evaluations
    """
    first = True
    first_item = None
    for item in items:
        if first:
            first = False
            first_item = item
        else:
            if item != first_item:
                return False
    # So we return False if was empty
    return not first


def map_items(func, v):
    """A helper to apply `func` to all elements (keys and values) within dict

    No type checking of values passed to func is done, so `func`
    should be resilient to values which it should not handle

    Initial usecase - apply_recursive(url_fragment, ensure_unicode)
    """
    # map all elements within item
    return v.__class__(
        item.__class__(map(func, item))
        for item in v.items()
    )


def partition(items, predicate=bool):
    """Partition `items` by `predicate`.

    Parameters
    ----------
    items : iterable
    predicate : callable
        A function that will be mapped over each element in `items`. The
        elements will partitioned based on whether the return value is false or
        true.

    Returns
    -------
    A tuple with two generators, the first for 'false' items and the second for
    'true' ones.

    Notes
    -----
    Taken from Peter Otten's snippet posted at
    https://nedbatchelder.com/blog/201306/filter_a_list_into_two_parts.html
    """
    a, b = tee((predicate(item), item) for item in items)
    return ((item for pred, item in a if not pred),
            (item for pred, item in b if pred))


def generate_chunks(container, size):
    """Given a container, generate chunks from it with size up to `size`
    """
    # There could be a "smarter" solution but I think this would suffice
    assert size > 0,  "Size should be non-0 positive"
    while container:
        yield container[:size]
        container = container[size:]


def generate_file_chunks(files, cmd=None):
    """Given a list of files, generate chunks of them to avoid exceding cmdline length

    Parameters
    ----------
    files: list of str
    cmd: str or list of str, optional
      Command to account for as well
    """
    files = ensure_list(files)
    cmd = ensure_list(cmd)

    maxl = max(map(len, files)) if files else 0
    chunk_size = max(
        1,  # should at least be 1. If blows then - not our fault
        (CMD_MAX_ARG
         - sum((len(x) + 3) for x in cmd)
         - 4  # for '--' below
         ) // (maxl + 3)  # +3 for possible quotes and a space
    )
    # TODO: additional treatment for "too many arguments"? although
    # as https://github.com/datalad/datalad/issues/1883#issuecomment
    # -436272758
    # shows there seems to be no hardcoded limit on # of arguments,
    # but may be we decide to go for smth like follow to be on safe side
    # chunk_size = min(10240 - len(cmd), chunk_size)
    file_chunks = generate_chunks(files, chunk_size)
    return file_chunks


#
# Generators helpers
#

def saved_generator(gen):
    """Given a generator returns two generators, where 2nd one just replays

    So the first one would be going through the generated items and 2nd one
    would be yielding saved items
    """
    saved = []

    def gen1():
        for x in gen:  # iterating over original generator
            saved.append(x)
            yield x

    def gen2():
        for x in saved:  # yielding saved entries
            yield x

    return gen1(), gen2()


#
# Decorators
#
def better_wraps(to_be_wrapped):
    """Decorator to replace `functools.wraps`

    This is based on `wrapt` instead of `functools` and in opposition to `wraps`
    preserves the correct signature of the decorated function.
    It is written with the intention to replace the use of `wraps` without any
    need to rewrite the actual decorators.
    """

    @wrapt.decorator(adapter=to_be_wrapped)
    def intermediator(to_be_wrapper, instance, args, kwargs):
        return to_be_wrapper(*args, **kwargs)

    return intermediator


# Borrowed from pandas
# Copyright: 2011-2014, Lambda Foundry, Inc. and PyData Development Team
# License: BSD-3
def optional_args(decorator):
    """allows a decorator to take optional positional and keyword arguments.
        Assumes that taking a single, callable, positional argument means that
        it is decorating a function, i.e. something like this::

            @my_decorator
            def function(): pass

        Calls decorator with decorator(f, `*args`, `**kwargs`)"""

    @better_wraps(decorator)
    def wrapper(*args, **kwargs):
        def dec(f):
            return decorator(f, *args, **kwargs)

        is_decorating = not kwargs and len(args) == 1 and isinstance(args[0], Callable)
        if is_decorating:
            f = args[0]
            args = []
            return dec(f)
        else:
            return dec

    return wrapper


# TODO: just provide decorators for tempfile.mk* functions. This is ugly!
def get_tempfile_kwargs(tkwargs=None, prefix="", wrapped=None):
    """Updates kwargs to be passed to tempfile. calls depending on env vars
    """
    if tkwargs is None:
        tkwargs_ = {}
    else:
        # operate on a copy of tkwargs to avoid any side-effects
        tkwargs_ = tkwargs.copy()

    # TODO: don't remember why I had this one originally
    # if len(targs)<2 and \
    if 'prefix' not in tkwargs_:
        tkwargs_['prefix'] = '_'.join(
            ['datalad_temp'] +
            ([prefix] if prefix else []) +
            ([''] if (on_windows or not wrapped) else [wrapped.__name__]))

    directory = os.environ.get('DATALAD_TESTS_TEMP_DIR')
    if directory and 'dir' not in tkwargs_:
        tkwargs_['dir'] = directory

    return tkwargs_


@optional_args
def line_profile(func):
    """Q&D helper to line profile the function and spit out stats
    """
    import line_profiler
    prof = line_profiler.LineProfiler()

    @wraps(func)
    def newfunc(*args, **kwargs):
        try:
            pfunc = prof(func)
            return pfunc(*args, **kwargs)
        finally:
            prof.print_stats()
    return newfunc


# Borrowed from duecredit to wrap duecredit-handling to guarantee failsafe
def never_fail(f):
    """Assure that function never fails -- all exceptions are caught

    Returns `None` if function fails internally.
    """
    @wraps(f)
    def wrapped_func(*args, **kwargs):
        try:
            return f(*args, **kwargs)
        except Exception as e:
            lgr.warning(
                "DataLad internal failure while running %s: %r. "
                "Please report at https://github.com/datalad/datalad/issues"
                % (f, e)
            )

    if os.environ.get('DATALAD_ALLOW_FAIL', False):
        return f
    else:
        return wrapped_func


#
# Context Managers
#


@contextmanager
def nothing_cm():
    """Just a dummy cm to programmically switch context managers"""
    yield


@contextmanager
def swallow_outputs():
    """Context manager to help consuming both stdout and stderr, and print()

    stdout is available as cm.out and stderr as cm.err whenever cm is the
    yielded context manager.
    Internally uses temporary files to guarantee absent side-effects of swallowing
    into StringIO which lacks .fileno.

    print mocking is necessary for some uses where sys.stdout was already bound
    to original sys.stdout, thus mocking it later had no effect. Overriding
    print function had desired effect
    """

    class StringIOAdapter(object):
        """Little adapter to help getting out/err values
        """
        def __init__(self):
            kw = get_tempfile_kwargs({}, prefix="outputs")

            self._out = open(tempfile.mktemp(**kw), 'w')
            self._err = open(tempfile.mktemp(**kw), 'w')

        def _read(self, h):
            with open(h.name) as f:
                return f.read()

        @property
        def out(self):
            if not self._out.closed:
                self._out.flush()
            return self._read(self._out)

        @property
        def err(self):
            if not self._err.closed:
                self._err.flush()
            return self._read(self._err)

        @property
        def handles(self):
            return self._out, self._err

        def cleanup(self):
            self._out.close()
            self._err.close()
            out_name = self._out.name
            err_name = self._err.name
            del self._out
            del self._err
            gc.collect()
            rmtemp(out_name)
            rmtemp(err_name)

    def fake_print(*args, **kwargs):
        sep = kwargs.pop('sep', ' ')
        end = kwargs.pop('end', '\n')
        file = kwargs.pop('file', sys.stdout)

        if file in (oldout, olderr, sys.stdout, sys.stderr):
            # we mock
            try:
                sys.stdout.write(sep.join(args) + end)
            except UnicodeEncodeError as exc:
                lgr.error(
                    "Failed to write to mocked stdout, got %s, continue as it "
                    "didn't happen",  exc)
        else:
            # must be some other file one -- leave it alone
            oldprint(*args, sep=sep, end=end, file=file)

    from .ui import ui
    # preserve -- they could have been mocked already
    oldprint = getattr(builtins, 'print')
    oldout, olderr = sys.stdout, sys.stderr
    olduiout = ui.out
    adapter = StringIOAdapter()

    try:
        sys.stdout, sys.stderr = adapter.handles
        ui.out = adapter.handles[0]
        setattr(builtins, 'print', fake_print)

        yield adapter
    finally:
        sys.stdout, sys.stderr, ui.out = oldout, olderr, olduiout
        setattr(builtins, 'print',  oldprint)
        adapter.cleanup()


@contextmanager
def swallow_logs(new_level=None, file_=None, name='datalad'):
    """Context manager to consume all logs.

    """
    lgr = logging.getLogger(name)

    # Keep old settings
    old_level = lgr.level
    old_handlers = lgr.handlers

    # Let's log everything into a string
    # TODO: generalize with the one for swallow_outputs
    class StringIOAdapter(object):
        """Little adapter to help getting out values

        And to stay consistent with how swallow_outputs behaves
        """
        def __init__(self):
            if file_ is None:
                kw = get_tempfile_kwargs({}, prefix="logs")
                out_file = tempfile.mktemp(**kw)
            else:
                out_file = file_
            # PY3 requires clearly one or another.  race condition possible
            self._out = open(out_file, 'a')
            self._final_out = None

        def _read(self, h):
            with open(h.name) as f:
                return f.read()

        @property
        def out(self):
            if self._final_out is not None:
                # we closed and cleaned up already
                return self._final_out
            else:
                self._out.flush()
                return self._read(self._out)

        @property
        def lines(self):
            return self.out.split('\n')

        @property
        def handle(self):
            return self._out

        def cleanup(self):
            # store for access while object exists
            self._final_out = self.out
            self._out.close()
            out_name = self._out.name
            del self._out
            gc.collect()
            if not file_:
                rmtemp(out_name)

        def assert_logged(self, msg=None, level=None, regex=True, **kwargs):
            """Provide assertion on whether a msg was logged at a given level

            If neither `msg` nor `level` provided, checks if anything was logged
            at all.

            Parameters
            ----------
            msg: str, optional
              Message (as a regular expression, if `regex`) to be searched.
              If no msg provided, checks if anything was logged at a given level.
            level: str, optional
              String representing the level to be logged
            regex: bool, optional
              If False, regular `assert_in` is used
            **kwargs: str, optional
              Passed to `assert_re_in` or `assert_in`
            """
            from datalad.tests.utils import assert_re_in
            from datalad.tests.utils import assert_in

            if regex:
                match = r'\[%s\] ' % level if level else r"\[\S+\] "
            else:
                match = '[%s] ' % level if level else ''

            if msg:
                match += msg

            if match:
                (assert_re_in if regex else assert_in)(match, self.out, **kwargs)
            else:
                assert not kwargs, "no kwargs to be passed anywhere"
                assert self.out, "Nothing was logged!?"

    adapter = StringIOAdapter()
    # TODO: it does store messages but without any formatting, i.e. even without
    # date/time prefix etc.  IMHO it should preserve formatting in case if file_ is
    # set
    swallow_handler = logging.StreamHandler(adapter.handle)
    # we want to log levelname so we could test against it
    swallow_handler.setFormatter(
        logging.Formatter('[%(levelname)s] %(message)s'))
    # Inherit filters
    from datalad.log import ProgressHandler
    swallow_handler.filters = sum([h.filters for h in old_handlers
                                   if not isinstance(h, ProgressHandler)],
                                  [])
    lgr.handlers = [swallow_handler]
    if old_level < logging.DEBUG:  # so if HEAVYDEBUG etc -- show them!
        lgr.handlers += old_handlers

    if isinstance(new_level, str):
        new_level = getattr(logging, new_level)

    if new_level is not None:
        lgr.setLevel(new_level)

    try:
        yield adapter
        # TODO: if file_ and there was an exception -- most probably worth logging it?
        # although ideally it should be the next log outside added to that file_ ... oh well
    finally:
        lgr.handlers = old_handlers
        lgr.setLevel(old_level)
        adapter.cleanup()


# TODO: May be melt in with swallow_logs at some point:
@contextmanager
def disable_logger(logger=None):
    """context manager to temporarily disable logging

    This is to provide one of swallow_logs' purposes without unnecessarily
    creating temp files (see gh-1865)

    Parameters
    ----------
    logger: Logger
        Logger whose handlers will be ordered to not log anything.
        Default: datalad's topmost Logger ('datalad')
    """

    class NullFilter(logging.Filter):
        """Filter class to reject all records
        """
        def filter(self, record):
            return 0

    if logger is None:
        # default: all of datalad's logging:
        logger = logging.getLogger('datalad')

    filter_ = NullFilter(logger.name)
    [h.addFilter(filter_) for h in logger.handlers]

    try:
        yield logger
    finally:
        [h.removeFilter(filter_) for h in logger.handlers]


#
# Additional handlers
#
_sys_excepthook = sys.excepthook  # Just in case we ever need original one


def setup_exceptionhook(ipython=False):
    """Overloads default sys.excepthook with our exceptionhook handler.

       If interactive, our exceptionhook handler will invoke
       pdb.post_mortem; if not interactive, then invokes default handler.
    """

    def _datalad_pdb_excepthook(type, value, tb):
        import traceback
        traceback.print_exception(type, value, tb)
        print()
        if is_interactive():
            import pdb
            pdb.post_mortem(tb)

    if ipython:
        from IPython.core import ultratb
        sys.excepthook = ultratb.FormattedTB(mode='Verbose',
                                             # color_scheme='Linux',
                                             call_pdb=is_interactive())
    else:
        sys.excepthook = _datalad_pdb_excepthook


def ensure_dir(*args):
    """Make sure directory exists.

    Joins the list of arguments to an os-specific path to the desired
    directory and creates it, if it not exists yet.
    """
    dirname = opj(*args)
    if not exists(dirname):
        os.makedirs(dirname)
    return dirname


def updated(d, update):
    """Return a copy of the input with the 'update'

    Primarily for updating dictionaries
    """
    d = d.copy()
    d.update(update)
    return d


_pwd_mode = None


def _switch_to_getcwd(msg, *args):
    global _pwd_mode
    _pwd_mode = 'cwd'
    lgr.warning(
        msg + ". From now on will be returning os.getcwd(). Directory"
               " symlinks in the paths will be resolved",
        *args
    )
    # TODO:  we might want to mitigate by going through all flywheighted
    # repos and tuning up their .paths to be resolved?


def getpwd():
    """Try to return a CWD without dereferencing possible symlinks

    This function will try to use PWD environment variable to provide a current
    working directory, possibly with some directories along the path being
    symlinks to other directories.  Unfortunately, PWD is used/set only by the
    shell and such functions as `os.chdir` and `os.getcwd` nohow use or modify
    it, thus `os.getcwd()` returns path with links dereferenced.

    While returning current working directory based on PWD env variable we
    verify that the directory is the same as `os.getcwd()` after resolving all
    symlinks.  If that verification fails, we fall back to always use
    `os.getcwd()`.

    Initial decision to either use PWD env variable or os.getcwd() is done upon
    the first call of this function.
    """
    global _pwd_mode
    if _pwd_mode is None:
        # we need to decide!
        try:
            pwd = os.environ['PWD']
            if on_windows and pwd and pwd.startswith('/'):
                # It should be a path from MSYS.
                # - it might start with a drive letter or not
                # - it seems to be "illegal" to have a single letter directories
                #   under / path, i.e. if created - they aren't found
                # - 'ln -s' does not fail to create a "symlink" but it just
                # copies!
                #   so we are not likely to need original PWD purpose on
                # those systems
                # Verdict:
                _pwd_mode = 'cwd'
            else:
                _pwd_mode = 'PWD'
        except KeyError:
            _pwd_mode = 'cwd'

    if _pwd_mode == 'cwd':
        return os.getcwd()
    elif _pwd_mode == 'PWD':
        try:
            cwd = os.getcwd()
        except OSError as exc:
            if "o such file" in str(exc):
                # directory was removed but we promised to be robust and
                # still report the path we might know since we are still in PWD
                # mode
                cwd = None
            else:
                raise
        try:
            pwd = os.environ['PWD']
            pwd_real = op.realpath(pwd)
            # This logic would fail to catch the case where chdir did happen
            # to the directory where current PWD is pointing to, e.g.
            # $> ls -ld $PWD
            # lrwxrwxrwx 1 yoh yoh 5 Oct 11 13:27 /home/yoh/.tmp/tmp -> /tmp//
            # hopa:~/.tmp/tmp
            # $> python -c 'import os; os.chdir("/tmp"); from datalad.utils import getpwd; print(getpwd(), os.getcwd())'
            # ('/home/yoh/.tmp/tmp', '/tmp')
            # but I guess that should not be too harmful
            if cwd is not None and pwd_real != cwd:
                _switch_to_getcwd(
                    "realpath of PWD=%s is %s whenever os.getcwd()=%s",
                    pwd, pwd_real, cwd
                )
                return cwd
            return pwd
        except KeyError:
            _switch_to_getcwd("PWD env variable is no longer available")
            return cwd  # Must not happen, but may be someone
                        # evil purges PWD from environ?
    else:
        raise RuntimeError(
            "Must have not got here. "
            "pwd_mode must be either cwd or PWD. And it is now %r" % (_pwd_mode,)
        )


class chpwd(object):
    """Wrapper around os.chdir which also adjusts environ['PWD']

    The reason is that otherwise PWD is simply inherited from the shell
    and we have no ability to assess directory path without dereferencing
    symlinks.

    If used as a context manager it allows to temporarily change directory
    to the given path
    """
    def __init__(self, path, mkdir=False, logsuffix=''):

        if path:
            # PY35 has no auto-conversion of Path to str
            path = str(path)
            pwd = getpwd()
            self._prev_pwd = pwd
        else:
            self._prev_pwd = None
            return

        if not isabs(path):
            path = normpath(opj(pwd, path))
        if not os.path.exists(path) and mkdir:
            self._mkdir = True
            os.mkdir(path)
        else:
            self._mkdir = False
        lgr.debug("chdir %r -> %r %s", self._prev_pwd, path, logsuffix)
        os.chdir(path)  # for grep people -- ok, to chdir here!
        os.environ['PWD'] = path

    def __enter__(self):
        # nothing more to do really, chdir was in the constructor
        pass

    def __exit__(self, exc_type, exc_val, exc_tb):
        if self._prev_pwd:
            # Need to use self.__class__ so this instance, if the entire
            # thing mocked during the test, still would use correct chpwd
            self.__class__(self._prev_pwd, logsuffix="(coming back)")


def dlabspath(path, norm=False):
    """Symlinks-in-the-cwd aware abspath

    os.path.abspath relies on os.getcwd() which would not know about symlinks
    in the path

    TODO: we might want to norm=True by default to match behavior of
    os .path.abspath?
    """
    if not isabs(path):
        # if not absolute -- relative to pwd
        path = opj(getpwd(), path)
    return normpath(path) if norm else path


def with_pathsep(path):
    """Little helper to guarantee that path ends with /"""
    return path + sep if not path.endswith(sep) else path


def get_path_prefix(path, pwd=None):
    """Get path prefix (for current directory)

    Returns relative path to the topdir, if we are under topdir, and if not
    absolute path to topdir.  If `pwd` is not specified - current directory
    assumed
    """
    pwd = pwd or getpwd()
    path = dlabspath(path)
    path_ = with_pathsep(path)
    pwd_ = with_pathsep(pwd)
    common = commonprefix((path_, pwd_))
    if common.endswith(sep) and common in {path_, pwd_}:
        # we are in subdir or above the path = use relative path
        location_prefix = relpath(path, pwd)
        # if benign "here" - cut off
        if location_prefix in (curdir, curdir + sep):
            location_prefix = ''
        return location_prefix
    else:
        # just return absolute path
        return path


def _get_normalized_paths(path, prefix):
    if isabs(path) != isabs(prefix):
        raise ValueError("Both paths must either be absolute or relative. "
                         "Got %r and %r" % (path, prefix))
    path = with_pathsep(path)
    prefix = with_pathsep(prefix)
    return path, prefix


def path_startswith(path, prefix):
    """Return True if path starts with prefix path

    Parameters
    ----------
    path: str
    prefix: str
    """
    path, prefix = _get_normalized_paths(path, prefix)
    return path.startswith(prefix)


def path_is_subpath(path, prefix):
    """Return True if path is a subpath of prefix

    It will return False if path == prefix.

    Parameters
    ----------
    path: str
    prefix: str
    """
    path, prefix = _get_normalized_paths(path, prefix)
    return (len(prefix) < len(path)) and path.startswith(prefix)


def knows_annex(path):
    """Returns whether at a given path there is information about an annex

    It is just a thin wrapper around GitRepo.is_with_annex() classmethod
    which also checks for `path` to exist first.

    This includes actually present annexes, but also uninitialized ones, or
    even the presence of a remote annex branch.
    """
    from os.path import exists
    if not exists(path):
        lgr.debug("No annex: test path {0} doesn't exist".format(path))
        return False
    from datalad.support.gitrepo import GitRepo
    return GitRepo(path, init=False, create=False).is_with_annex()


@contextmanager
def make_tempfile(content=None, wrapped=None, **tkwargs):
    """Helper class to provide a temporary file name and remove it at the end (context manager)

    Parameters
    ----------
    mkdir : bool, optional (default: False)
        If True, temporary directory created using tempfile.mkdtemp()
    content : str or bytes, optional
        Content to be stored in the file created
    wrapped : function, optional
        If set, function name used to prefix temporary file name
    `**tkwargs`:
        All other arguments are passed into the call to tempfile.mk{,d}temp(),
        and resultant temporary filename is passed as the first argument into
        the function t.  If no 'prefix' argument is provided, it will be
        constructed using module and function names ('.' replaced with
        '_').

    To change the used directory without providing keyword argument 'dir' set
    DATALAD_TESTS_TEMP_DIR.

    Examples
    --------
        >>> from os.path import exists
        >>> from datalad.utils import make_tempfile
        >>> with make_tempfile() as fname:
        ...    k = open(fname, 'w').write('silly test')
        >>> assert not exists(fname)  # was removed

        >>> with make_tempfile(content="blah") as fname:
        ...    assert open(fname).read() == "blah"
    """

    if tkwargs.get('mkdir', None) and content is not None:
        raise ValueError("mkdir=True while providing content makes no sense")

    tkwargs_ = get_tempfile_kwargs(tkwargs, wrapped=wrapped)

    # if DATALAD_TESTS_TEMP_DIR is set, use that as directory,
    # let mktemp handle it otherwise. However, an explicitly provided
    # dir=... will override this.
    mkdir = tkwargs_.pop('mkdir', False)

    filename = {False: tempfile.mktemp,
                True: tempfile.mkdtemp}[mkdir](**tkwargs_)
    filename = realpath(filename)

    if content:
        with open(filename, 'w' + ('b' if isinstance(content, bytes) else '')) as f:
            f.write(content)

    if __debug__:
        # TODO mkdir
        lgr.debug('Created temporary thing named %s"' % filename)
    try:
        yield filename
    finally:
        # glob here for all files with the same name (-suffix)
        # would be useful whenever we requested .img filename,
        # and function creates .hdr as well
        lsuffix = len(tkwargs_.get('suffix', ''))
        filename_ = lsuffix and filename[:-lsuffix] or filename
        filenames = glob.glob(filename_ + '*')
        if len(filename_) < 3 or len(filenames) > 5:
            # For paranoid yoh who stepped into this already ones ;-)
            lgr.warning("It is unlikely that it was intended to remove all"
                        " files matching %r. Skipping" % filename_)
            return
        for f in filenames:
            try:
                rmtemp(f)
            except OSError:  # pragma: no cover
                pass


def _path_(*p):
    """Given a path in POSIX" notation, regenerate one in native to the env one"""
    if on_windows:
        return opj(*map(lambda x: opj(*x.split('/')), p))
    else:
        # Assume that all others as POSIX compliant so nothing to be done
        return opj(*p)


def get_timestamp_suffix(time_=None, prefix='-'):
    """Return a time stamp (full date and time up to second)

    primarily to be used for generation of log files names
    """
    args = []
    if time_ is not None:
        if isinstance(time_, int):
            time_ = time.gmtime(time_)
        args.append(time_)
    return time.strftime(prefix + TIMESTAMP_FMT, *args)


def get_logfilename(dspath, cmd='datalad'):
    """Return a filename to use for logging under a dataset/repository

    directory would be created if doesn't exist, but dspath must exist
    and be a directory
    """
    assert(exists(dspath))
    assert(isdir(dspath))
    ds_logdir = ensure_dir(dspath, '.git', 'datalad', 'logs')  # TODO: use WEB_META_LOG whenever #789 merged
    return opj(ds_logdir, 'crawl-%s.log' % get_timestamp_suffix())


def get_trace(edges, start, end, trace=None):
    """Return the trace/path to reach a node in a tree.

    Parameters
    ----------
    edges : sequence(2-tuple)
      The tree given by a sequence of edges (parent, child) tuples. The
      nodes can be identified by any value and data type that supports
      the '==' operation.
    start :
      Identifier of the start node. Must be present as a value in the parent
      location of an edge tuple in order to be found.
    end :
      Identifier of the target/end node. Must be present as a value in the child
      location of an edge tuple in order to be found.
    trace : list
      Mostly useful for recursive calls, and used internally.

    Returns
    -------
    None or list
      Returns a list with the trace to the target (the starts and the target
      are not included in the trace, hence if start and end are directly connected
      an empty list is returned), or None when no trace to the target can be found,
      or start and end are identical.
    """
    # the term trace is used to avoid confusion with a path in the sense
    # of a filesystem path, but the analogy fits and nodes can be paths
    if trace is None:
        trace = []
    if not edges:
        raise ValueError("no edges given")
    for cand in edges:
        cand_super, cand_sub = cand
        if cand_sub in trace:
            # only DAGs, skip any cyclic traces
            continue
        if trace and cand_super != trace[-1]:
            # only consider edges that lead off the end of the trace
            continue
        if not trace and cand_super != start:
            # we got nothing yet, and this edges is not matching the start
            continue
        if cand_sub == end:
            return trace
        # dive into potential subnodes
        cand_trace = get_trace(
            edges,
            start,
            end,
            trace + [cand_sub])
        if cand_trace:
            return cand_trace
    return None


def get_dataset_root(path):
    """Return the root of an existent dataset containing a given path

    The root path is returned in the same absolute or relative form
    as the input argument. If no associated dataset exists, or the
    input path doesn't exist, None is returned.

    If `path` is a symlink or something other than a directory, its
    the root dataset containing its parent directory will be reported.
    If none can be found, at a symlink at `path` is pointing to a
    dataset, `path` itself will be reported as the root.
    """
    suffix = '.git'
    altered = None
    if op.islink(path) or not op.isdir(path):
        altered = path
        path = op.dirname(path)
    apath = op.abspath(path)
    # while we can still go up
    while op.split(apath)[1]:
        if op.exists(op.join(path, suffix)):
            return path
        # new test path in the format we got it
        path = op.normpath(op.join(path, os.pardir))
        # no luck, next round
        apath = op.abspath(path)
    # if we applied dirname() at the top, we give it another go with
    # the actual path, if it was itself a symlink, it could be the
    # top-level dataset itself
    if altered and op.exists(op.join(altered, suffix)):
        return altered

    return None


# ATM used in datalad_crawler extension, so do not remove yet
def try_multiple(ntrials, exception, base, f, *args, **kwargs):
    """Call f multiple times making exponentially growing delay between the calls"""
    from .dochelpers import exc_str
    for trial in range(1, ntrials+1):
        try:
            return f(*args, **kwargs)
        except exception as exc:
            if trial == ntrials:
                raise  # just reraise on the last trial
            t = base ** trial
            lgr.warning("Caught %s on trial #%d. Sleeping %f and retrying",
                        exc_str(exc), trial, t)
            sleep(t)


@optional_args
def try_multiple_dec(f, ntrials=None, duration=0.1, exceptions=None, increment_type=None):
    """Decorator to try function multiple times.

    Main purpose is to decorate functions dealing with removal of files/directories
    and which might need a few seconds to work correctly on Windows which takes
    its time to release files/directories.

    Parameters
    ----------
    ntrials: int, optional
    duration: float, optional
      Seconds to sleep before retrying.
    increment_type: {None, 'exponential'}
      Note that if it is exponential, duration should typically be > 1.0
      so it grows with higher power

    """
    from .dochelpers import exc_str
    if not exceptions:
        exceptions = (OSError, WindowsError, PermissionError) \
            if on_windows else OSError
    if not ntrials:
        # Life goes fast on proper systems, no need to delay it much
        ntrials = 50 if on_windows else 3

    assert increment_type in {None, 'exponential'}

    @wraps(f)
    def wrapped(*args, **kwargs):
        t = duration
        for trial in range(ntrials):
            try:
                return f(*args, **kwargs)
            except exceptions as exc:
                if increment_type == 'exponential':
                    t = duration ** (trial + 1)
                lgr.log(
                    5,
                    "Caught %s on trial #%d. Sleeping %f and retrying",
                    exc_str(exc), trial, t)
                if trial < ntrials - 1:
                    sleep(t)
                else:
                    raise

    return wrapped


@try_multiple_dec
def unlink(f):
    """'Robust' unlink.  Would try multiple times

    On windows boxes there is evidence for a latency of more than a second
    until a file is considered no longer "in-use".
    WindowsError is not known on Linux, and if IOError or any other
    exception
    is thrown then if except statement has WindowsError in it -- NameError
    also see gh-2533
    """
    # Check for open files
    assert_no_open_files(f)
    return os.unlink(f)


@try_multiple_dec
def _rmtree(*args, **kwargs):
    """Just a helper to decorate shutil.rmtree.

    rmtree defined above does more and ideally should not itself be decorated
    since a recursive definition and does checks for open files inside etc -
    might be too runtime expensive
    """
    return shutil.rmtree(*args, **kwargs)


def slash_join(base, extension):
    """Join two strings with a '/', avoiding duplicate slashes

    If any of the strings is None the other is returned as is.
    """
    if extension is None:
        return base
    if base is None:
        return extension
    return '/'.join(
        (base.rstrip('/'),
         extension.lstrip('/')))


def safe_print(s):
    """Print with protection against UTF-8 encoding errors"""
    # A little bit of dance to be able to test this code
    print_f = getattr(builtins, "print")
    try:
        print_f(s)
    except UnicodeEncodeError:
        # failed to encode so let's do encoding while ignoring errors
        # to print at least something
        # explicit `or ascii` since somehow on buildbot it seemed to return None
        s = s.encode(getattr(sys.stdout, 'encoding', 'ascii') or 'ascii', errors='ignore') \
            if hasattr(s, 'encode') else s
        print_f(s.decode())

#
# IO Helpers
#

def open_r_encdetect(fname, readahead=1000):
    """Return a file object in read mode with auto-detected encoding

    This is helpful when dealing with files of unknown encoding.

    Parameters
    ----------
    readahead: int, optional
      How many bytes to read for guessing the encoding type.  If
      negative - full file will be read
    """
    from chardet import detect
    import io
    # read some bytes from the file
    with open(fname, 'rb') as f:
        head = f.read(readahead)
    enc = detect(head)
    denc = enc.get('encoding', None)
    lgr.debug("Auto-detected encoding %s for file %s (confidence: %s)",
              denc,
              fname,
              enc.get('confidence', 'unknown'))
    return io.open(fname, encoding=denc)


def read_csv_lines(fname, dialect=None, readahead=16384, **kwargs):
    """A generator of dict records from a CSV/TSV

    Automatically guesses the encoding for each record to convert to UTF-8

    Parameters
    ----------
    fname: str
      Filename
    dialect: str, optional
      Dialect to specify to csv.reader. If not specified -- guessed from
      the file, if fails to guess, "excel-tab" is assumed
    readahead: int, optional
      How many bytes to read from the file to guess the type
    **kwargs
      Passed to `csv.reader`
    """
    import csv
    if dialect is None:
        with open(fname) as tsvfile:
            # add robustness, use a sniffer
            try:
                dialect = csv.Sniffer().sniff(tsvfile.read(readahead))
            except Exception as exc:
                from .dochelpers import exc_str
                lgr.warning(
                    'Could not determine file-format, assuming TSV: %s',
                    exc_str(exc)
                )
                dialect = 'excel-tab'

    kw = dict(encoding='utf-8')
    with open(fname, 'r', **kw) as tsvfile:
        # csv.py doesn't do Unicode; encode temporarily as UTF-8:
        csv_reader = csv.reader(
            tsvfile,
            dialect=dialect,
            **kwargs
        )
        header = None
        for row in csv_reader:
            # decode UTF-8 back to Unicode, cell by cell:
            row_unicode = map(ensure_unicode, row)
            if header is None:
                header = list(row_unicode)
            else:
                yield dict(zip(header, row_unicode))


def import_modules(modnames, pkg, msg="Failed to import {module}", log=lgr.debug):
    """Helper to import a list of modules without failing if N/A

    Parameters
    ----------
    modnames: list of str
      List of module names to import
    pkg: str
      Package under which to import
    msg: str, optional
      Message template for .format() to log at DEBUG level if import fails.
      Keys {module} and {package} will be provided and ': {exception}' appended
    log: callable, optional
      Logger call to use for logging messages
    """
    from importlib import import_module
    _globals = globals()
    mods_loaded = []
    if pkg and not pkg in sys.modules:
        # with python 3.5.1 (ok with 3.5.5) somehow kept running into
        #  Failed to import dlsub1: Parent module 'dltestm1' not loaded
        # while running the test. Preloading pkg resolved the issue
        import_module(pkg)
    for modname in modnames:
        try:
            _globals[modname] = mod = import_module(
                '.{}'.format(modname),
                pkg)
            mods_loaded.append(mod)
        except Exception as exc:
            from datalad.dochelpers import exc_str
            log((msg + ': {exception}').format(
                module=modname, package=pkg, exception=exc_str(exc)))
    return mods_loaded


def import_module_from_file(modpath, pkg=None, log=lgr.debug):
    """Import provided module given a path

    TODO:
    - RF/make use of it in pipeline.py which has similar logic
    - join with import_modules above?

    Parameters
    ----------
    pkg: module, optional
       If provided, and modpath is under pkg.__path__, relative import will be
       used
    """
    assert(modpath.endswith('.py'))  # for now just for .py files

    log("Importing %s" % modpath)

    modname = basename(modpath)[:-3]
    relmodpath = None
    if pkg:
        for pkgpath in pkg.__path__:
            if path_is_subpath(modpath, pkgpath):
                # for now relying on having .py extension -- assertion above
                relmodpath = '.' + relpath(modpath[:-3], pkgpath).replace(sep, '.')
                break

    try:
        if relmodpath:
            from importlib import import_module
            mod = import_module(relmodpath, pkg.__name__)
        else:
            dirname_ = dirname(modpath)
            try:
                sys.path.insert(0, dirname_)
                mod = __import__(modname, level=0)
            finally:
                if dirname_ in sys.path:
                    sys.path.pop(sys.path.index(dirname_))
                else:
                    log("Expected path %s to be within sys.path, but it was gone!" % dirname_)
    except Exception as e:
        from datalad.dochelpers import exc_str
        raise RuntimeError(
            "Failed to import module from %s: %s" % (modpath, exc_str(e)))

    return mod


def get_encoding_info():
    """Return a dictionary with various encoding/locale information"""
    import sys, locale
    from collections import OrderedDict
    return OrderedDict([
        ('default', sys.getdefaultencoding()),
        ('filesystem', sys.getfilesystemencoding()),
        ('locale.prefered', locale.getpreferredencoding()),
    ])


def get_envvars_info():
    from collections import OrderedDict
    envs = []
    for var, val in os.environ.items():
        if (
                var.startswith('PYTHON') or
                var.startswith('LC_') or
                var.startswith('GIT_') or
                var in ('LANG', 'LANGUAGE', 'PATH')
        ):
            envs.append((var, val))
    return OrderedDict(envs)


# This class is modified from Snakemake (v5.1.4)
class SequenceFormatter(string.Formatter):
    """string.Formatter subclass with special behavior for sequences.

    This class delegates formatting of individual elements to another
    formatter object. Non-list objects are formatted by calling the
    delegate formatter's "format_field" method. List-like objects
    (list, tuple, set, frozenset) are formatted by formatting each
    element of the list according to the specified format spec using
    the delegate formatter and then joining the resulting strings with
    a separator (space by default).
    """

    def __init__(self, separator=" ", element_formatter=string.Formatter(),
                 *args, **kwargs):
        self.separator = separator
        self.element_formatter = element_formatter

    def format_element(self, elem, format_spec):
        """Format a single element

        For sequences, this is called once for each element in a
        sequence. For anything else, it is called on the entire
        object. It is intended to be overridden in subclases.
        """
        return self.element_formatter.format_field(elem, format_spec)

    def format_field(self, value, format_spec):
        if isinstance(value, (list, tuple, set, frozenset)):
            return self.separator.join(self.format_element(v, format_spec)
                                       for v in value)
        else:
            return self.format_element(value, format_spec)


# TODO: eventually we might want to make use of attr module
class File(object):
    """Helper for a file entry in the create_tree/@with_tree

    It allows to define additional settings for entries
    """
    def __init__(self, name, executable=False):
        """

        Parameters
        ----------
        name : str
          Name of the file
        executable: bool, optional
          Make it executable
        """
        self.name = name
        self.executable = executable

    def __str__(self):
        return self.name


def create_tree_archive(path, name, load, overwrite=False, archives_leading_dir=True):
    """Given an archive `name`, create under `path` with specified `load` tree
    """
    from datalad.support.archives import compress_files
    dirname = file_basename(name)
    full_dirname = op.join(path, dirname)
    os.makedirs(full_dirname)
    create_tree(full_dirname, load, archives_leading_dir=archives_leading_dir)
    # create archive
    if archives_leading_dir:
        compress_files([dirname], name, path=path, overwrite=overwrite)
    else:
        compress_files(list(map(op.basename, glob.glob(opj(full_dirname, '*')))),
                       opj(op.pardir, name),
                       path=op.join(path, dirname),
                       overwrite=overwrite)
    # remove original tree
    rmtree(full_dirname)


def create_tree(path, tree, archives_leading_dir=True, remove_existing=False):
    """Given a list of tuples (name, load) create such a tree

    if load is a tuple itself -- that would create either a subtree or an archive
    with that content and place it into the tree if name ends with .tar.gz
    """
    lgr.log(5, "Creating a tree under %s", path)
    if not op.exists(path):
        os.makedirs(path)

    if isinstance(tree, dict):
        tree = tree.items()

    for file_, load in tree:
        if isinstance(file_, File):
            executable = file_.executable
            name = file_.name
        else:
            executable = False
            name = file_
        full_name = op.join(path, name)
        if remove_existing and op.lexists(full_name):
            rmtree(full_name, chmod_files=True)
        if isinstance(load, (tuple, list, dict)):
            if name.endswith('.tar.gz') or name.endswith('.tar') or name.endswith('.zip'):
                create_tree_archive(
                    path, name, load,
                    archives_leading_dir=archives_leading_dir)
            else:
                create_tree(
                    full_name, load,
                    archives_leading_dir=archives_leading_dir,
                    remove_existing=remove_existing)
        else:
            open_func = open
            if full_name.endswith('.gz'):
                open_func = gzip.open
            with open_func(full_name, "wb") as f:
                f.write(ensure_bytes(load, 'utf-8'))
        if executable:
            os.chmod(full_name, os.stat(full_name).st_mode | stat.S_IEXEC)


def get_suggestions_msg(values, known, sep="\n        "):
    """Return a formatted string with suggestions for values given the known ones
    """
    import difflib
    suggestions = []
    for value in ensure_list(values):  # might not want to do it if we change presentation below
        suggestions += difflib.get_close_matches(value, known)
    suggestions = unique(suggestions)
    msg = "Did you mean any of these?"
    if suggestions:
        if '\n' in sep:
            # if separator includes new line - we add entire separator right away
            msg += sep
        else:
            msg += ' '
        return msg + "%s\n" % sep.join(suggestions)
    return ''


def bytes2human(n, format='%(value).1f %(symbol)sB'):
    """
    Convert n bytes into a human readable string based on format.
    symbols can be either "customary", "customary_ext", "iec" or "iec_ext",
    see: http://goo.gl/kTQMs

      >>> from datalad.utils import bytes2human
      >>> bytes2human(1)
      '1.0 B'
      >>> bytes2human(1024)
      '1.0 KB'
      >>> bytes2human(1048576)
      '1.0 MB'
      >>> bytes2human(1099511627776127398123789121)
      '909.5 YB'

      >>> bytes2human(10000, "%(value).1f %(symbol)s/sec")
      '9.8 K/sec'

      >>> # precision can be adjusted by playing with %f operator
      >>> bytes2human(10000, format="%(value).5f %(symbol)s")
      '9.76562 K'

    Taken from: http://goo.gl/kTQMs and subsequently simplified
    Original Author: Giampaolo Rodola' <g.rodola [AT] gmail [DOT] com>
    License: MIT
    """
    n = int(n)
    if n < 0:
        raise ValueError("n < 0")
    symbols = ('', 'K', 'M', 'G', 'T', 'P', 'E', 'Z', 'Y')
    prefix = {}
    for i, s in enumerate(symbols[1:]):
        prefix[s] = 1 << (i + 1) * 10
    for symbol in reversed(symbols[1:]):
        if n >= prefix[symbol]:
            value = float(n) / prefix[symbol]
            return format % locals()
    return format % dict(symbol=symbols[0], value=n)


def quote_cmdlinearg(arg):
    """Perform platform-appropriate argument quoting"""
    # https://stackoverflow.com/a/15262019
    return '"{}"'.format(
        arg.replace('"', '""')
    ) if on_windows else shlex_quote(arg)


def split_cmdline(s):
    """Perform platform-appropriate command line splitting.

    Identical to `shlex.split()` on non-windows platforms.

    Modified from https://stackoverflow.com/a/35900070
    """
    if not on_windows:
        return shlex_split(s)

    # the rest is for windows
    RE_CMD_LEX = r'''"((?:""|\\["\\]|[^"])*)"?()|(\\\\(?=\\*")|\\")|(&&?|\|\|?|\d?>|[<])|([^\s"&|<>]+)|(\s+)|(.)'''

    args = []
    accu = None   # collects pieces of one arg
    for qs, qss, esc, pipe, word, white, fail in re.findall(RE_CMD_LEX, s):
        if word:
            pass   # most frequent
        elif esc:
            word = esc[1]
        elif white or pipe:
            if accu is not None:
                args.append(accu)
            if pipe:
                args.append(pipe)
            accu = None
            continue
        elif fail:
            raise ValueError("invalid or incomplete shell string")
        elif qs:
            word = qs.replace('\\"', '"').replace('\\\\', '\\')
            if platform == 0:
                word = word.replace('""', '"')
        else:
            word = qss   # may be even empty; must be last

        accu = (accu or '') + word

    if accu is not None:
        args.append(accu)

    return args


def get_wrapped_class(wrapped):
    """Determine the command class a wrapped __call__ belongs to"""
    mod = sys.modules[wrapped.__module__]
    command_class_name = wrapped.__qualname__.split('.')[-2]
    _func_class = mod.__dict__[command_class_name]
    lgr.debug("Determined class of decorated function: %s", _func_class)
    return _func_class


# TODO whenever we feel ready for English kill the compat block below
assure_tuple_or_list = ensure_tuple_or_list
assure_iter = ensure_iter
assure_list = ensure_list
assure_list_from_str = ensure_list_from_str
assure_dict_from_str = ensure_dict_from_str
assure_bytes = ensure_bytes
assure_unicode = ensure_unicode
assure_bool = ensure_bool
assure_dir = ensure_dir


lgr.log(5, "Done importing datalad.utils")

```
--- END FILE ---

Please first localize the bug based on the issue statement, and then generate *SEARCH/REPLACE* edits to fix the issue.

Every *SEARCH/REPLACE* edit must use this format:
1. The file path
2. The start of search block: <<<<<<< SEARCH
3. A contiguous chunk of lines to search for in the existing source code
4. The dividing line: =======
5. The lines to replace into the source code
6. The end of the replace block: >>>>>>> REPLACE

Here is an example:

```python
### mathweb/flask/app.py
<<<<<<< SEARCH
from flask import Flask
=======
import math
from flask import Flask
>>>>>>> REPLACE
```
</solution>

Please note that the *SEARCH/REPLACE* edit REQUIRES PROPER INDENTATION. If you would like to add the line '        print(x)', you must fully write that out, with all those spaces before the code!
Wrap each *SEARCH/REPLACE* edit in a code block as shown in the example above. If you have multiple *SEARCH/REPLACE* edits, use a separate code block for each one.
user