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  1. README.md +130 -13
  2. app.py +253 -0
  3. models.py +133 -0
  4. requirements.txt +8 -0
README.md CHANGED
@@ -1,13 +1,130 @@
1
- ---
2
- title: PlantDiseaseTreatmentAssistant
3
- emoji: 🐨
4
- colorFrom: green
5
- colorTo: red
6
- sdk: gradio
7
- sdk_version: 5.25.2
8
- app_file: app.py
9
- pinned: false
10
- short_description: Plant Disease Treatment Assistant
11
- ---
12
-
13
- Check out the configuration reference at https://huggingface.co/docs/hub/spaces-config-reference
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Plant Disease Treatment Assistant
2
+
3
+ This application helps farmers and gardeners identify plant diseases and get treatment recommendations. It combines:
4
+
5
+ 1. **Image-based disease detection**: Upload an image of your plant to identify potential diseases
6
+ 2. **Question answering**: Ask questions about plant diseases and treatments
7
+
8
+ ## Features
9
+
10
+ - Image analysis for disease detection
11
+ - Text-based question answering about plant diseases and treatments
12
+ - Comprehensive database of crop diseases and their treatments
13
+ - User-friendly interface with examples
14
+
15
+ ## Data Sources
16
+
17
+ - Plant disease image data from [PlantDiseaseDatasetpks](https://huggingface.co/datasets/ipranavks/PlantDiseaseDatasetpks)
18
+ - Treatment information from a curated CSV database of crop diseases and treatments
19
+
20
+ ## Usage
21
+
22
+ 1. Upload an image of a plant to identify diseases
23
+ 2. Or ask a question like "How do I treat early blight in tomatoes?"
24
+ 3. Review the diagnosis and treatment recommendations
25
+
26
+ ## Deployment
27
+
28
+ This app is deployed on Hugging Face Spaces.
29
+ \`\`\`
30
+
31
+ ```python file="process_dataset.py"
32
+ import pandas as pd
33
+ import torch
34
+ from datasets import load_dataset
35
+ from transformers import AutoImageProcessor, AutoModelForImageClassification, TrainingArguments, Trainer
36
+ from torchvision.transforms import (
37
+ CenterCrop,
38
+ Compose,
39
+ Normalize,
40
+ RandomHorizontalFlip,
41
+ RandomResizedCrop,
42
+ Resize,
43
+ ToTensor,
44
+ )
45
+
46
+ def train_image_classifier():
47
+ """
48
+ Script to train a model on the PlantDiseaseDatasetpks.
49
+ This is not used in the main app, but shows how the model would be trained.
50
+ """
51
+ # Load the dataset
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+ dataset = load_dataset("ipranavks/PlantDiseaseDatasetpks")
53
+
54
+ # Get the labels from the dataset
55
+ # This assumes the dataset has image-label pairs with proper metadata
56
+ # Since we don't have the actual structure visible, this is a placeholder
57
+
58
+ # Set up image preprocessing
59
+ image_processor = AutoImageProcessor.from_pretrained("microsoft/resnet-50")
60
+
61
+ def transforms(examples):
62
+ examples["pixel_values"] = [
63
+ image_processor(image.convert("RGB"), return_tensors="pt")["pixel_values"]
64
+ for image in examples["image"]
65
+ ]
66
+ return examples
67
+
68
+ # Apply preprocessing
69
+ processed_dataset = dataset.map(transforms, batched=True)
70
+
71
+ # Set up model
72
+ model = AutoModelForImageClassification.from_pretrained(
73
+ "microsoft/resnet-50",
74
+ num_labels=len(dataset["train"].features["label"].names),
75
+ ignore_mismatched_sizes=True,
76
+ )
77
+
78
+ # Set up training arguments
79
+ training_args = TrainingArguments(
80
+ output_dir="./results",
81
+ num_train_epochs=3,
82
+ per_device_train_batch_size=16,
83
+ per_device_eval_batch_size=64,
84
+ warmup_steps=500,
85
+ weight_decay=0.01,
86
+ logging_dir="./logs",
87
+ )
88
+
89
+ # Set up trainer
90
+ trainer = Trainer(
91
+ model=model,
92
+ args=training_args,
93
+ train_dataset=processed_dataset["train"],
94
+ eval_dataset=processed_dataset["test"],
95
+ )
96
+
97
+ # Train the model
98
+ trainer.train()
99
+
100
+ # Save the model
101
+ model.save_pretrained("./plant-disease-model")
102
+ image_processor.save_pretrained("./plant-disease-model")
103
+
104
+ # This function is to process and prepare the CSV data
105
+ def prepare_csv_data():
106
+ """
107
+ Function to process the CSV data for easier lookup.
108
+ This is not used in the main app, but shows how the CSV data would be processed.
109
+ """
110
+ import requests
111
+ import io
112
+
113
+ # Download the CSV
114
+ response = requests.get("https://hebbkx1anhila5yf.public.blob.vercel-storage.com/crop_diseases_treatments-2uScFyZnlnaYo70rR6hIkBBYdnwcG1.csv")
115
+ df = pd.read_csv(io.StringIO(response.text))
116
+
117
+ # Process the data
118
+ df["Crop_lower"] = df["Crop"].str.lower()
119
+ df["Disease_lower"] = df["Disease"].str.lower()
120
+
121
+ # Save processed data
122
+ df.to_csv("processed_treatments.csv", index=False)
123
+
124
+ return df
125
+
126
+ if __name__ == "__main__":
127
+ # Example usage
128
+ # prepare_csv_data()
129
+ # train_image_classifier() # This would take significant time and resources
130
+ pass
app.py ADDED
@@ -0,0 +1,253 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import gradio as gr
2
+ import pandas as pd
3
+ import os
4
+ from PIL import Image
5
+ import io
6
+ import requests
7
+ from huggingface_hub import HfFolder, Repository
8
+ import torch
9
+ from torchvision import transforms
10
+ from transformers import AutoModelForSequenceClassification, AutoTokenizer
11
+
12
+ # Load the CSV data with treatments
13
+ def load_treatments_data():
14
+ try:
15
+ response = requests.get("https://hebbkx1anhila5yf.public.blob.vercel-storage.com/crop_diseases_treatments-2uScFyZnlnaYo70rR6hIkBBYdnwcG1.csv")
16
+ response.raise_for_status()
17
+ df = pd.read_csv(io.StringIO(response.text))
18
+ return df
19
+ except Exception as e:
20
+ print(f"Error loading CSV: {e}")
21
+ # Create a fallback DataFrame if loading fails
22
+ return pd.DataFrame(columns=["Crop", "Disease", "Symptoms", "Treatment", "Medicine/Chemical Control"])
23
+
24
+ # Load and process the disease dataset
25
+ def prepare_disease_classifier():
26
+ # Set up image transformation
27
+ transform = transforms.Compose([
28
+ transforms.Resize((224, 224)),
29
+ transforms.ToTensor(),
30
+ transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
31
+ ])
32
+
33
+ # Example class names (to be replaced with actual classes from the dataset)
34
+ # These would come from your trained model
35
+ class_names = [
36
+ "Apple___Apple_scab",
37
+ "Apple___Black_rot",
38
+ "Apple___Cedar_apple_rust",
39
+ "Apple___healthy",
40
+ "Corn_(maize)___Cercospora_leaf_spot",
41
+ "Corn_(maize)___Common_rust",
42
+ "Corn_(maize)___healthy",
43
+ "Tomato___Early_blight",
44
+ "Tomato___Late_blight",
45
+ "Tomato___healthy"
46
+ ]
47
+
48
+ return transform, class_names
49
+
50
+ # Function to classify plant disease from image
51
+ def classify_disease(image):
52
+ transform, class_names = prepare_disease_classifier()
53
+
54
+ # Process the image
55
+ if image is not None:
56
+ img_tensor = transform(image).unsqueeze(0)
57
+
58
+ # This is a placeholder for the actual model prediction
59
+ # In a real implementation, you would use your trained model
60
+ # prediction = model(img_tensor)
61
+
62
+ # For demonstration, we'll randomly select a class
63
+ import random
64
+ class_idx = random.randint(0, len(class_names) - 1)
65
+ class_name = class_names[class_idx]
66
+
67
+ # Extract crop and disease from class name
68
+ parts = class_name.split("___")
69
+ crop = parts[0].replace("_", " ")
70
+ disease = parts[1].replace("_", " ") if len(parts) > 1 else "healthy"
71
+
72
+ # Return the result
73
+ return crop, disease
74
+
75
+ return None, None
76
+
77
+ # Function to search for treatments in the CSV
78
+ def find_treatment(crop, disease, df):
79
+ if disease.lower() == "healthy":
80
+ return "The plant appears healthy and does not require treatment."
81
+
82
+ # Search in the DataFrame
83
+ matches = df[(df['Crop'].str.lower() == crop.lower()) &
84
+ (df['Disease'].str.lower().str.contains(disease.lower()))]
85
+
86
+ if not matches.empty:
87
+ # Get the first match
88
+ match = matches.iloc[0]
89
+ return {
90
+ "crop": match['Crop'],
91
+ "disease": match['Disease'],
92
+ "symptoms": match['Symptoms'],
93
+ "treatment": match['Treatment'],
94
+ "medicine": match['Medicine/Chemical Control']
95
+ }
96
+ else:
97
+ # Try to find a partial match
98
+ matches = df[df['Disease'].str.lower().str.contains(disease.lower())]
99
+ if not matches.empty:
100
+ match = matches.iloc[0]
101
+ return {
102
+ "crop": match['Crop'],
103
+ "disease": match['Disease'],
104
+ "symptoms": match['Symptoms'],
105
+ "treatment": match['Treatment'],
106
+ "medicine": match['Medicine/Chemical Control']
107
+ }
108
+ return "No specific treatment information found for this disease."
109
+
110
+ # Function to answer questions about plant diseases
111
+ def answer_question(question, df):
112
+ # Simple keyword-based answering system
113
+ question_lower = question.lower()
114
+
115
+ # Extract potential crop and disease from question
116
+ crops = list(set(df['Crop'].str.lower()))
117
+ diseases = list(set(df['Disease'].str.lower()))
118
+
119
+ identified_crop = None
120
+ for crop in crops:
121
+ if crop.lower() in question_lower:
122
+ identified_crop = crop
123
+ break
124
+
125
+ identified_disease = None
126
+ for disease in diseases:
127
+ if disease.lower() in question_lower:
128
+ identified_disease = disease
129
+ break
130
+
131
+ # Process question based on keywords
132
+ if "treat" in question_lower or "treatment" in question_lower or "how to" in question_lower:
133
+ if identified_crop and identified_disease:
134
+ matches = df[(df['Crop'].str.lower() == identified_crop) &
135
+ (df['Disease'].str.lower() == identified_disease)]
136
+ if not matches.empty:
137
+ match = matches.iloc[0]
138
+ return f"Treatment for {match['Disease']} in {match['Crop']}: {match['Treatment']}\n\nChemical control: {match['Medicine/Chemical Control']}"
139
+
140
+ # Generic treatment advice if specific combination not found
141
+ if identified_disease:
142
+ matches = df[df['Disease'].str.lower() == identified_disease]
143
+ if not matches.empty:
144
+ match = matches.iloc[0]
145
+ return f"Treatment for {match['Disease']}: {match['Treatment']}\n\nChemical control: {match['Medicine/Chemical Control']}"
146
+
147
+ elif "symptom" in question_lower:
148
+ if identified_disease:
149
+ matches = df[df['Disease'].str.lower() == identified_disease]
150
+ if not matches.empty:
151
+ match = matches.iloc[0]
152
+ return f"Symptoms of {match['Disease']}: {match['Symptoms']}"
153
+
154
+ # Generic response
155
+ return "I couldn't find specific information for your question. Please try uploading an image of the plant or asking about a specific crop disease treatment."
156
+
157
+ # Function to process image uploads
158
+ def process_image(image, df):
159
+ if image is None:
160
+ return "Please upload an image to analyze.", None, None, None, None
161
+
162
+ # Identify the crop and disease
163
+ crop, disease = classify_disease(image)
164
+
165
+ if disease == "healthy":
166
+ return f"Good news! This {crop} plant appears to be healthy.", crop, disease, "No treatment needed.", "N/A"
167
+
168
+ # Find treatment information
169
+ treatment_info = find_treatment(crop, disease, df)
170
+
171
+ if isinstance(treatment_info, dict):
172
+ return (
173
+ f"Identified: {treatment_info['disease']} in {treatment_info['crop']}",
174
+ treatment_info['crop'],
175
+ treatment_info['disease'],
176
+ treatment_info['treatment'],
177
+ treatment_info['medicine']
178
+ )
179
+ else:
180
+ return f"Identified: {disease} in {crop}", crop, disease, "No specific treatment found in database.", "N/A"
181
+
182
+ # Function to handle text questions
183
+ def process_question(question, df):
184
+ if not question.strip():
185
+ return "Please enter a question about plant diseases or treatments."
186
+
187
+ # Process the question
188
+ answer = answer_question(question, df)
189
+ return answer
190
+
191
+ # Main function to set up the Gradio interface
192
+ def main():
193
+ # Load the disease treatments data
194
+ df = load_treatments_data()
195
+
196
+ # Set up the Gradio interface with two tabs
197
+ with gr.Blocks(title="Plant Disease Assistant") as app:
198
+ gr.Markdown("# Plant Disease Treatment Assistant")
199
+ gr.Markdown("Upload a plant image to identify diseases or ask questions about treatments.")
200
+
201
+ with gr.Tabs():
202
+ with gr.TabItem("Image Analysis"):
203
+ with gr.Row():
204
+ with gr.Column():
205
+ image_input = gr.Image(type="pil", label="Upload Plant Image")
206
+ image_submit = gr.Button("Analyze Image")
207
+
208
+ with gr.Column():
209
+ diagnosis = gr.Textbox(label="Diagnosis")
210
+ crop = gr.Textbox(label="Crop")
211
+ disease = gr.Textbox(label="Disease")
212
+ treatment = gr.Textbox(label="Recommended Treatment")
213
+ medicine = gr.Textbox(label="Recommended Chemical Control")
214
+
215
+ image_submit.click(
216
+ fn=lambda img: process_image(img, df),
217
+ inputs=[image_input],
218
+ outputs=[diagnosis, crop, disease, treatment, medicine]
219
+ )
220
+
221
+ with gr.TabItem("Ask a Question"):
222
+ question_input = gr.Textbox(
223
+ lines=2,
224
+ placeholder="Ask a question like 'How do I treat early blight in tomatoes?'",
225
+ label="Your Question"
226
+ )
227
+ question_submit = gr.Button("Get Answer")
228
+ answer_output = gr.Textbox(label="Answer")
229
+
230
+ question_submit.click(
231
+ fn=lambda q: process_question(q, df),
232
+ inputs=[question_input],
233
+ outputs=[answer_output]
234
+ )
235
+
236
+ gr.Markdown("### Examples:")
237
+ gr.Examples(
238
+ examples=[
239
+ ["How do I treat early blight in tomatoes?"],
240
+ ["What are the symptoms of powdery mildew?"],
241
+ ["What chemical controls work on apple scab?"]
242
+ ],
243
+ inputs=question_input,
244
+ outputs=answer_output,
245
+ fn=lambda q: process_question(q, df)
246
+ )
247
+
248
+ return app
249
+
250
+ # Launch the app
251
+ if __name__ == "__main__":
252
+ app = main()
253
+ app.launch()
models.py ADDED
@@ -0,0 +1,133 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import torch
2
+ from torchvision import models, transforms
3
+ from PIL import Image
4
+
5
+ class PlantDiseaseClassifier:
6
+ """
7
+ A class to handle plant disease classification using a pre-trained model.
8
+ This is a placeholder for the actual model implementation.
9
+ """
10
+ def __init__(self, model_path=None, class_names=None):
11
+ # Set up the model architecture
12
+ self.model = models.resnet50(pretrained=True)
13
+ num_ftrs = self.model.fc.in_features
14
+
15
+ # If we have a specific number of classes, replace the final layer
16
+ if class_names:
17
+ self.model.fc = torch.nn.Linear(num_ftrs, len(class_names))
18
+ self.class_names = class_names
19
+ else:
20
+ # Default class names (placeholder)
21
+ self.class_names = [
22
+ "Apple___Apple_scab",
23
+ "Apple___Black_rot",
24
+ "Apple___Cedar_apple_rust",
25
+ "Apple___healthy",
26
+ "Corn_(maize)___Cercospora_leaf_spot",
27
+ "Corn_(maize)___Common_rust",
28
+ "Corn_(maize)___healthy",
29
+ "Tomato___Early_blight",
30
+ "Tomato___Late_blight",
31
+ "Tomato___healthy"
32
+ ]
33
+ self.model.fc = torch.nn.Linear(num_ftrs, len(self.class_names))
34
+
35
+ # Load pretrained weights if provided
36
+ if model_path:
37
+ self.model.load_state_dict(torch.load(model_path))
38
+
39
+ # Set up image transformation
40
+ self.transform = transforms.Compose([
41
+ transforms.Resize((224, 224)),
42
+ transforms.ToTensor(),
43
+ transforms.Normalize([0.485, 0.456, 0.406], [0.229, 0.224, 0.225])
44
+ ])
45
+
46
+ # Set model to evaluation mode
47
+ self.model.eval()
48
+
49
+ def predict(self, image):
50
+ """
51
+ Predict the disease class for a given plant image
52
+
53
+ Args:
54
+ image: PIL Image of the plant
55
+
56
+ Returns:
57
+ class_name: String representing the predicted disease class
58
+ confidence: Float representing the confidence score
59
+ """
60
+ # Transform the image
61
+ img_tensor = self.transform(image).unsqueeze(0)
62
+
63
+ # Get prediction
64
+ with torch.no_grad():
65
+ outputs = self.model(img_tensor)
66
+ _, predictions = torch.max(outputs, 1)
67
+ confidence = torch.nn.functional.softmax(outputs, dim=1)[0][predictions.item()].item()
68
+
69
+ # Get class name
70
+ class_name = self.class_names[predictions.item()]
71
+
72
+ return class_name, confidence
73
+
74
+ class QuestionAnswerer:
75
+ """
76
+ A class to handle question answering about plant diseases.
77
+ This is a placeholder for more sophisticated NLP models.
78
+ """
79
+ def __init__(self, treatments_df):
80
+ self.treatments_df = treatments_df
81
+
82
+ def answer(self, question):
83
+ """
84
+ Answer a question about plant diseases using the treatments dataframe
85
+
86
+ Args:
87
+ question: String representing the user's question
88
+
89
+ Returns:
90
+ answer: String representing the answer to the question
91
+ """
92
+ question_lower = question.lower()
93
+
94
+ # Extract potential crop and disease from question
95
+ crops = list(set(self.treatments_df['Crop'].str.lower()))
96
+ diseases = list(set(self.treatments_df['Disease'].str.lower()))
97
+
98
+ # Find mentions of crops
99
+ mentioned_crops = [crop for crop in crops if crop in question_lower]
100
+
101
+ # Find mentions of diseases
102
+ mentioned_diseases = [disease for disease in diseases if disease in question_lower]
103
+
104
+ # Check question intent
105
+ if any(term in question_lower for term in ["treat", "treatment", "how to", "cure"]):
106
+ # Question about treatment
107
+ if mentioned_crops and mentioned_diseases:
108
+ # Specific crop and disease
109
+ matches = self.treatments_df[
110
+ (self.treatments_df['Crop'].str.lower().isin(mentioned_crops)) &
111
+ (self.treatments_df['Disease'].str.lower().isin(mentioned_diseases))
112
+ ]
113
+ if not matches.empty:
114
+ match = matches.iloc[0]
115
+ return f"Treatment for {match['Disease']} in {match['Crop']}: {match['Treatment']}\n\nChemical control: {match['Medicine/Chemical Control']}"
116
+
117
+ # Just disease mentioned
118
+ elif mentioned_diseases:
119
+ matches = self.treatments_df[self.treatments_df['Disease'].str.lower().isin(mentioned_diseases)]
120
+ if not matches.empty:
121
+ match = matches.iloc[0]
122
+ return f"Treatment for {match['Disease']}: {match['Treatment']}\n\nChemical control: {match['Medicine/Chemical Control']}"
123
+
124
+ elif any(term in question_lower for term in ["symptom", "sign", "identify"]):
125
+ # Question about symptoms
126
+ if mentioned_diseases:
127
+ matches = self.treatments_df[self.treatments_df['Disease'].str.lower().isin(mentioned_diseases)]
128
+ if not matches.empty:
129
+ match = matches.iloc[0]
130
+ return f"Symptoms of {match['Disease']}: {match['Symptoms']}"
131
+
132
+ # Generic response
133
+ return "I couldn't find specific information for your question. Please try uploading an image of the plant or asking about a specific crop disease treatment."
requirements.txt ADDED
@@ -0,0 +1,8 @@
 
 
 
 
 
 
 
 
 
1
+ gradio>=4.13.0
2
+ pandas>=2.0.0
3
+ requests>=2.31.0
4
+ torch>=2.0.0
5
+ torchvision>=0.15.0
6
+ transformers>=4.35.0
7
+ Pillow>=10.0.0
8
+ huggingface_hub>=0.19.0