Update README.md

README.md

@@ -1,18 +1,882 @@
-## Quick start
-Currently, the test supports pptx, pdf, csv, docx, txt file types
-* install textract
+<center><h2>🚀 LightRAG: Simple and Fast Retrieval-Augmented Generation</h2></center>
+
+
+![请添加图片描述](https://i-blog.csdnimg.cn/direct/567139f1a36e4564abc63ce5c12b6271.jpeg)
+
+<div align='center'>
+     <p>
+        <a href='https://lightrag.github.io'><img src='https://img.shields.io/badge/Project-Page-Green'></a>
+        <a href='https://youtu.be/oageL-1I0GE'><img src='https://badges.aleen42.com/src/youtube.svg'></a>
+        <a href='https://arxiv.org/abs/2410.05779'><img src='https://img.shields.io/badge/arXiv-2410.05779-b31b1b'></a>
+        <a href='https://discord.gg/rdE8YVPm'><img src='https://discordapp.com/api/guilds/1296348098003734629/widget.png?style=shield'></a>
+    </p>
+     <p>
+          <img src='https://img.shields.io/github/stars/hkuds/lightrag?color=green&style=social' />
+        <img src="https://img.shields.io/badge/python->=3.9.11-blue">
+        <a href="https://pypi.org/project/lightrag-hku/"><img src="https://img.shields.io/pypi/v/lightrag-hku.svg"></a>
+        <a href="https://pepy.tech/project/lightrag-hku"><img src="https://static.pepy.tech/badge/lightrag-hku/month"></a>
+    </p>
+
+This repository hosts the code of LightRAG. The structure of this code is based on [nano-graphrag](https://github.com/gusye1234/nano-graphrag).
+![请添加图片描述](https://i-blog.csdnimg.cn/direct/b2aaf634151b4706892693ffb43d9093.png)
+</div>
+
+## 🎉 News
+- [x] [2024.10.29]🎯🎯📢📢Multi-file types are now supported by `textract`.
+- [x] [2024.10.20]🎯🎯📢📢We’ve added a new feature to LightRAG: Graph Visualization.
+- [x] [2024.10.18]🎯🎯📢📢We’ve added a link to a [LightRAG Introduction Video](https://youtu.be/oageL-1I0GE). Thanks to the author!
+- [x] [2024.10.17]🎯🎯📢📢We have created a [Discord channel](https://discord.gg/mvsfu2Tg)! Welcome to join for sharing and discussions! 🎉🎉
+- [x] [2024.10.16]🎯🎯📢📢LightRAG now supports [Ollama models](https://github.com/HKUDS/LightRAG?tab=readme-ov-file#quick-start)!
+- [x] [2024.10.15]🎯🎯📢📢LightRAG now supports [Hugging Face models](https://github.com/HKUDS/LightRAG?tab=readme-ov-file#quick-start)!
+
+## Algorithm Flowchart
+
+![LightRAG_Self excalidraw](https://github.com/user-attachments/assets/aa5c4892-2e44-49e6-a116-2403ed80a1a3)
+
+
+## Install
+
+* Install from source (Recommend)
+
+```bash
+cd LightRAG
+pip install -e .
+```
+* Install from PyPI
+```bash
+pip install lightrag-hku
+```
+
+## Quick Start
+* [Video demo](https://www.youtube.com/watch?v=g21royNJ4fw) of running LightRAG locally.
+* All the code can be found in the `examples`.
+* Set OpenAI API key in environment if using OpenAI models: `export OPENAI_API_KEY="sk-...".`
+* Download the demo text "A Christmas Carol by Charles Dickens":
+```bash
+curl https://raw.githubusercontent.com/gusye1234/nano-graphrag/main/tests/mock_data.txt > ./book.txt
+```
+Use the below Python snippet (in a script) to initialize LightRAG and perform queries:
+
+```python
+import os
+from lightrag import LightRAG, QueryParam
+from lightrag.llm import gpt_4o_mini_complete, gpt_4o_complete
+
+#########
+# Uncomment the below two lines if running in a jupyter notebook to handle the async nature of rag.insert()
+# import nest_asyncio
+# nest_asyncio.apply()
+#########
+
+WORKING_DIR = "./dickens"
+
+
+if not os.path.exists(WORKING_DIR):
+    os.mkdir(WORKING_DIR)
+
+rag = LightRAG(
+    working_dir=WORKING_DIR,
+    llm_model_func=gpt_4o_mini_complete  # Use gpt_4o_mini_complete LLM model
+    # llm_model_func=gpt_4o_complete  # Optionally, use a stronger model
+)
+
+with open("./book.txt") as f:
+    rag.insert(f.read())
+
+# Perform naive search
+print(rag.query("What are the top themes in this story?", param=QueryParam(mode="naive")))
+
+# Perform local search
+print(rag.query("What are the top themes in this story?", param=QueryParam(mode="local")))
+
+# Perform global search
+print(rag.query("What are the top themes in this story?", param=QueryParam(mode="global")))
+
+# Perform hybrid search
+print(rag.query("What are the top themes in this story?", param=QueryParam(mode="hybrid")))
+```
+
+<details>
+<summary> Using Open AI-like APIs </summary>
+
+* LightRAG also supports Open AI-like chat/embeddings APIs:
+```python
+async def llm_model_func(
+    prompt, system_prompt=None, history_messages=[], **kwargs
+) -> str:
+    return await openai_complete_if_cache(
+        "solar-mini",
+        prompt,
+        system_prompt=system_prompt,
+        history_messages=history_messages,
+        api_key=os.getenv("UPSTAGE_API_KEY"),
+        base_url="https://api.upstage.ai/v1/solar",
+        **kwargs
+    )
+
+async def embedding_func(texts: list[str]) -> np.ndarray:
+    return await openai_embedding(
+        texts,
+        model="solar-embedding-1-large-query",
+        api_key=os.getenv("UPSTAGE_API_KEY"),
+        base_url="https://api.upstage.ai/v1/solar"
+    )
+
+rag = LightRAG(
+    working_dir=WORKING_DIR,
+    llm_model_func=llm_model_func,
+    embedding_func=EmbeddingFunc(
+        embedding_dim=4096,
+        max_token_size=8192,
+        func=embedding_func
+    )
+)
+```
+</details>
+
+<details>
+<summary> Using Hugging Face Models </summary>
+
+* If you want to use Hugging Face models, you only need to set LightRAG as follows:
+```python
+from lightrag.llm import hf_model_complete, hf_embedding
+from transformers import AutoModel, AutoTokenizer
+
+# Initialize LightRAG with Hugging Face model
+rag = LightRAG(
+    working_dir=WORKING_DIR,
+    llm_model_func=hf_model_complete,  # Use Hugging Face model for text generation
+    llm_model_name='meta-llama/Llama-3.1-8B-Instruct',  # Model name from Hugging Face
+    # Use Hugging Face embedding function
+    embedding_func=EmbeddingFunc(
+        embedding_dim=384,
+        max_token_size=5000,
+        func=lambda texts: hf_embedding(
+            texts,
+            tokenizer=AutoTokenizer.from_pretrained("sentence-transformers/all-MiniLM-L6-v2"),
+            embed_model=AutoModel.from_pretrained("sentence-transformers/all-MiniLM-L6-v2")
+        )
+    ),
+)
+```
+</details>
+
+<details>
+<summary> Using Ollama Models </summary>
+
+### Overview
+If you want to use Ollama models, you need to pull model you plan to use and embedding model, for example `nomic-embed-text`.
+
+Then you only need to set LightRAG as follows:
+
+```python
+from lightrag.llm import ollama_model_complete, ollama_embedding
+
+# Initialize LightRAG with Ollama model
+rag = LightRAG(
+    working_dir=WORKING_DIR,
+    llm_model_func=ollama_model_complete,  # Use Ollama model for text generation
+    llm_model_name='your_model_name', # Your model name
+    # Use Ollama embedding function
+    embedding_func=EmbeddingFunc(
+        embedding_dim=768,
+        max_token_size=8192,
+        func=lambda texts: ollama_embedding(
+            texts,
+            embed_model="nomic-embed-text"
+        )
+    ),
+)
+```
+
+### Increasing context size
+In order for LightRAG to work context should be at least 32k tokens. By default Ollama models have context size of 8k. You can achieve this using one of two ways:
+
+#### Increasing the `num_ctx` parameter in Modelfile.
+
+1. Pull the model:
+```bash
+ollama pull qwen2
+```
+
+2. Display the model file:
+```bash
+ollama show --modelfile qwen2 > Modelfile
+```
+
+3. Edit the Modelfile by adding the following line:
 ```bash
-pip install textract
+PARAMETER num_ctx 32768
 ```
-* example
+
+4. Create the modified model:
 ```bash
+ollama create -f Modelfile qwen2m
+```
+
+#### Setup `num_ctx` via Ollama API.
+Tiy can use `llm_model_kwargs` param to configure ollama:
+
+```python
+rag = LightRAG(
+    working_dir=WORKING_DIR,
+    llm_model_func=ollama_model_complete,  # Use Ollama model for text generation
+    llm_model_name='your_model_name', # Your model name
+    llm_model_kwargs={"options": {"num_ctx": 32768}},
+    # Use Ollama embedding function
+    embedding_func=EmbeddingFunc(
+        embedding_dim=768,
+        max_token_size=8192,
+        func=lambda texts: ollama_embedding(
+            texts,
+            embed_model="nomic-embed-text"
+        )
+    ),
+)
+```
+#### Fully functional example
+
+There fully functional example `examples/lightrag_ollama_demo.py` that utilizes `gemma2:2b` model, runs only 4 requests in parallel and set context size to 32k.
+
+#### Low RAM GPUs
+
+In order to run this experiment on low RAM GPU you should select small model and tune context window (increasing context increase memory consumption). For example, running this ollama example on repurposed mining GPU with 6Gb of RAM required to set context size to 26k while using `gemma2:2b`. It was able to find 197 entities and 19 relations on `book.txt`.
+
+</details>
+
+### Query Param
+
+```python
+class QueryParam:
+    mode: Literal["local", "global", "hybrid", "naive"] = "global"
+    only_need_context: bool = False
+    response_type: str = "Multiple Paragraphs"
+    # Number of top-k items to retrieve; corresponds to entities in "local" mode and relationships in "global" mode.
+    top_k: int = 60
+    # Number of tokens for the original chunks.
+    max_token_for_text_unit: int = 4000
+    # Number of tokens for the relationship descriptions
+    max_token_for_global_context: int = 4000
+    # Number of tokens for the entity descriptions
+    max_token_for_local_context: int = 4000
+```
+
+### Batch Insert
+
+```python
+# Batch Insert: Insert multiple texts at once
+rag.insert(["TEXT1", "TEXT2",...])
+```
+
+### Incremental Insert
+
+```python
+# Incremental Insert: Insert new documents into an existing LightRAG instance
+rag = LightRAG(
+     working_dir=WORKING_DIR,
+     llm_model_func=llm_model_func,
+     embedding_func=EmbeddingFunc(
+          embedding_dim=embedding_dimension,
+          max_token_size=8192,
+          func=embedding_func,
+     ),
+)
+
+with open("./newText.txt") as f:
+    rag.insert(f.read())
+```
+
+### Multi-file Type Support
+
+The `testract` supports reading file types such as TXT, DOCX, PPTX, CSV, and PDF.
+
+```python
 import textract
-# 指定要提取文本的文件路径
-file_path = 'path/to/your/file.pdf'
-# 从文件中提取文本
+
+file_path = 'TEXT.pdf'
 text_content = textract.process(file_path)
-# 打印提取的文本
-print(text_content.decode('utf-8'))
+
+rag.insert(text_content.decode('utf-8'))
+```
+
+### Graph Visualization
+
+<details>
+<summary> Graph visualization with html </summary>
+
+* The following code can be found in `examples/graph_visual_with_html.py`
+
+```python
+import networkx as nx
+from pyvis.network import Network
+
+# Load the GraphML file
+G = nx.read_graphml('./dickens/graph_chunk_entity_relation.graphml')
+
+# Create a Pyvis network
+net = Network(notebook=True)
+
+# Convert NetworkX graph to Pyvis network
+net.from_nx(G)
+
+# Save and display the network
+net.show('knowledge_graph.html')
+```
+
+</details>
+
+<details>
+<summary> Graph visualization with Neo4j </summary>
+
+* The following code can be found in `examples/graph_visual_with_neo4j.py`
+
+```python
+import os
+import json
+from lightrag.utils import xml_to_json
+from neo4j import GraphDatabase
+
+# Constants
+WORKING_DIR = "./dickens"
+BATCH_SIZE_NODES = 500
+BATCH_SIZE_EDGES = 100
+
+# Neo4j connection credentials
+NEO4J_URI = "bolt://localhost:7687"
+NEO4J_USERNAME = "neo4j"
+NEO4J_PASSWORD = "your_password"
+
+def convert_xml_to_json(xml_path, output_path):
+    """Converts XML file to JSON and saves the output."""
+    if not os.path.exists(xml_path):
+        print(f"Error: File not found - {xml_path}")
+        return None
+
+    json_data = xml_to_json(xml_path)
+    if json_data:
+        with open(output_path, 'w', encoding='utf-8') as f:
+            json.dump(json_data, f, ensure_ascii=False, indent=2)
+        print(f"JSON file created: {output_path}")
+        return json_data
+    else:
+        print("Failed to create JSON data")
+        return None
+
+def process_in_batches(tx, query, data, batch_size):
+    """Process data in batches and execute the given query."""
+    for i in range(0, len(data), batch_size):
+        batch = data[i:i + batch_size]
+        tx.run(query, {"nodes": batch} if "nodes" in query else {"edges": batch})
+
+def main():
+    # Paths
+    xml_file = os.path.join(WORKING_DIR, 'graph_chunk_entity_relation.graphml')
+    json_file = os.path.join(WORKING_DIR, 'graph_data.json')
+
+    # Convert XML to JSON
+    json_data = convert_xml_to_json(xml_file, json_file)
+    if json_data is None:
+        return
+
+    # Load nodes and edges
+    nodes = json_data.get('nodes', [])
+    edges = json_data.get('edges', [])
+
+    # Neo4j queries
+    create_nodes_query = """
+    UNWIND $nodes AS node
+    MERGE (e:Entity {id: node.id})
+    SET e.entity_type = node.entity_type,
+        e.description = node.description,
+        e.source_id = node.source_id,
+        e.displayName = node.id
+    REMOVE e:Entity
+    WITH e, node
+    CALL apoc.create.addLabels(e, [node.entity_type]) YIELD node AS labeledNode
+    RETURN count(*)
+    """
+
+    create_edges_query = """
+    UNWIND $edges AS edge
+    MATCH (source {id: edge.source})
+    MATCH (target {id: edge.target})
+    WITH source, target, edge,
+         CASE
+            WHEN edge.keywords CONTAINS 'lead' THEN 'lead'
+            WHEN edge.keywords CONTAINS 'participate' THEN 'participate'
+            WHEN edge.keywords CONTAINS 'uses' THEN 'uses'
+            WHEN edge.keywords CONTAINS 'located' THEN 'located'
+            WHEN edge.keywords CONTAINS 'occurs' THEN 'occurs'
+           ELSE REPLACE(SPLIT(edge.keywords, ',')[0], '\"', '')
+         END AS relType
+    CALL apoc.create.relationship(source, relType, {
+      weight: edge.weight,
+      description: edge.description,
+      keywords: edge.keywords,
+      source_id: edge.source_id
+    }, target) YIELD rel
+    RETURN count(*)
+    """
+
+    set_displayname_and_labels_query = """
+    MATCH (n)
+    SET n.displayName = n.id
+    WITH n
+    CALL apoc.create.setLabels(n, [n.entity_type]) YIELD node
+    RETURN count(*)
+    """
+
+    # Create a Neo4j driver
+    driver = GraphDatabase.driver(NEO4J_URI, auth=(NEO4J_USERNAME, NEO4J_PASSWORD))
+
+    try:
+        # Execute queries in batches
+        with driver.session() as session:
+            # Insert nodes in batches
+            session.execute_write(process_in_batches, create_nodes_query, nodes, BATCH_SIZE_NODES)
+
+            # Insert edges in batches
+            session.execute_write(process_in_batches, create_edges_query, edges, BATCH_SIZE_EDGES)
+
+            # Set displayName and labels
+            session.run(set_displayname_and_labels_query)
+
+    except Exception as e:
+        print(f"Error occurred: {e}")
+
+    finally:
+        driver.close()
+
+if __name__ == "__main__":
+    main()
+```
+
+</details>
+
+## API Server Implementation
+
+LightRAG also provides a FastAPI-based server implementation for RESTful API access to RAG operations. This allows you to run LightRAG as a service and interact with it through HTTP requests.
+
+### Setting up the API Server
+<details>
+<summary>Click to expand setup instructions</summary>
+
+1. First, ensure you have the required dependencies:
+```bash
+pip install fastapi uvicorn pydantic
+```
+
+2. Set up your environment variables:
+```bash
+export RAG_DIR="your_index_directory"  # Optional: Defaults to "index_default"
+```
+
+3. Run the API server:
+```bash
+python examples/lightrag_api_openai_compatible_demo.py
+```
+
+The server will start on `http://0.0.0.0:8020`.
+</details>
+
+### API Endpoints
+
+The API server provides the following endpoints:
+
+#### 1. Query Endpoint
+<details>
+<summary>Click to view Query endpoint details</summary>
+
+- **URL:** `/query`
+- **Method:** POST
+- **Body:**
+```json
+{
+    "query": "Your question here",
+    "mode": "hybrid"  // Can be "naive", "local", "global", or "hybrid"
+}
+```
+- **Example:**
+```bash
+curl -X POST "http://127.0.0.1:8020/query" \
+     -H "Content-Type: application/json" \
+     -d '{"query": "What are the main themes?", "mode": "hybrid"}'
+```
+</details>
+
+#### 2. Insert Text Endpoint
+<details>
+<summary>Click to view Insert Text endpoint details</summary>
+
+- **URL:** `/insert`
+- **Method:** POST
+- **Body:**
+```json
+{
+    "text": "Your text content here"
+}
+```
+- **Example:**
+```bash
+curl -X POST "http://127.0.0.1:8020/insert" \
+     -H "Content-Type: application/json" \
+     -d '{"text": "Content to be inserted into RAG"}'
+```
+</details>
+
+#### 3. Insert File Endpoint
+<details>
+<summary>Click to view Insert File endpoint details</summary>
+
+- **URL:** `/insert_file`
+- **Method:** POST
+- **Body:**
+```json
+{
+    "file_path": "path/to/your/file.txt"
+}
+```
+- **Example:**
+```bash
+curl -X POST "http://127.0.0.1:8020/insert_file" \
+     -H "Content-Type: application/json" \
+     -d '{"file_path": "./book.txt"}'
+```
+</details>
+
+#### 4. Health Check Endpoint
+<details>
+<summary>Click to view Health Check endpoint details</summary>
+
+- **URL:** `/health`
+- **Method:** GET
+- **Example:**
+```bash
+curl -X GET "http://127.0.0.1:8020/health"
+```
+</details>
+
+### Configuration
+
+The API server can be configured using environment variables:
+- `RAG_DIR`: Directory for storing the RAG index (default: "index_default")
+- API keys and base URLs should be configured in the code for your specific LLM and embedding model providers
+
+### Error Handling
+<details>
+<summary>Click to view error handling details</summary>
+
+The API includes comprehensive error handling:
+- File not found errors (404)
+- Processing errors (500)
+- Supports multiple file encodings (UTF-8 and GBK)
+</details>
+
+## Evaluation
+### Dataset
+The dataset used in LightRAG can be downloaded from [TommyChien/UltraDomain](https://huggingface.co/datasets/TommyChien/UltraDomain).
+
+### Generate Query
+LightRAG uses the following prompt to generate high-level queries, with the corresponding code in `example/generate_query.py`.
+
+<details>
+<summary> Prompt </summary>
+
+```python
+Given the following description of a dataset:
+
+{description}
+
+Please identify 5 potential users who would engage with this dataset. For each user, list 5 tasks they would perform with this dataset. Then, for each (user, task) combination, generate 5 questions that require a high-level understanding of the entire dataset.
+
+Output the results in the following structure:
+- User 1: [user description]
+    - Task 1: [task description]
+        - Question 1:
+        - Question 2:
+        - Question 3:
+        - Question 4:
+        - Question 5:
+    - Task 2: [task description]
+        ...
+    - Task 5: [task description]
+- User 2: [user description]
+    ...
+- User 5: [user description]
+    ...
+```
+</details>
+
+ ### Batch Eval
+To evaluate the performance of two RAG systems on high-level queries, LightRAG uses the following prompt, with the specific code available in `example/batch_eval.py`.
+
+<details>
+<summary> Prompt </summary>
+
+```python
+---Role---
+You are an expert tasked with evaluating two answers to the same question based on three criteria: **Comprehensiveness**, **Diversity**, and **Empowerment**.
+---Goal---
+You will evaluate two answers to the same question based on three criteria: **Comprehensiveness**, **Diversity**, and **Empowerment**.
+
+- **Comprehensiveness**: How much detail does the answer provide to cover all aspects and details of the question?
+- **Diversity**: How varied and rich is the answer in providing different perspectives and insights on the question?
+- **Empowerment**: How well does the answer help the reader understand and make informed judgments about the topic?
+
+For each criterion, choose the better answer (either Answer 1 or Answer 2) and explain why. Then, select an overall winner based on these three categories.
+
+Here is the question:
+{query}
+
+Here are the two answers:
+
+**Answer 1:**
+{answer1}
+
+**Answer 2:**
+{answer2}
+
+Evaluate both answers using the three criteria listed above and provide detailed explanations for each criterion.
+
+Output your evaluation in the following JSON format:
+
+{{
+    "Comprehensiveness": {{
+        "Winner": "[Answer 1 or Answer 2]",
+        "Explanation": "[Provide explanation here]"
+    }},
+    "Empowerment": {{
+        "Winner": "[Answer 1 or Answer 2]",
+        "Explanation": "[Provide explanation here]"
+    }},
+    "Overall Winner": {{
+        "Winner": "[Answer 1 or Answer 2]",
+        "Explanation": "[Summarize why this answer is the overall winner based on the three criteria]"
+    }}
+}}
+```
+</details>
+
+### Overall Performance Table
+|                      | **Agriculture**             |                       | **CS**                    |                       | **Legal**                 |                       | **Mix**                   |                       |
+|----------------------|-------------------------|-----------------------|-----------------------|-----------------------|-----------------------|-----------------------|-----------------------|-----------------------|
+|                      | NaiveRAG                | **LightRAG**           | NaiveRAG              | **LightRAG**           | NaiveRAG              | **LightRAG**           | NaiveRAG              | **LightRAG**           |
+| **Comprehensiveness** | 32.69%                  | **67.31%**             | 35.44%                | **64.56%**             | 19.05%                | **80.95%**             | 36.36%                | **63.64%**             |
+| **Diversity**         | 24.09%                  | **75.91%**             | 35.24%                | **64.76%**             | 10.98%                | **89.02%**             | 30.76%                | **69.24%**             |
+| **Empowerment**       | 31.35%                  | **68.65%**             | 35.48%                | **64.52%**             | 17.59%                | **82.41%**             | 40.95%                | **59.05%**             |
+| **Overall**           | 33.30%                  | **66.70%**             | 34.76%                | **65.24%**             | 17.46%                | **82.54%**             | 37.59%                | **62.40%**             |
+|                      | RQ-RAG                  | **LightRAG**           | RQ-RAG                | **LightRAG**           | RQ-RAG                | **LightRAG**           | RQ-RAG                | **LightRAG**           |
+| **Comprehensiveness** | 32.05%                  | **67.95%**             | 39.30%                | **60.70%**             | 18.57%                | **81.43%**             | 38.89%                | **61.11%**             |
+| **Diversity**         | 29.44%                  | **70.56%**             | 38.71%                | **61.29%**             | 15.14%                | **84.86%**             | 28.50%                | **71.50%**             |
+| **Empowerment**       | 32.51%                  | **67.49%**             | 37.52%                | **62.48%**             | 17.80%                | **82.20%**             | 43.96%                | **56.04%**             |
+| **Overall**           | 33.29%                  | **66.71%**             | 39.03%                | **60.97%**             | 17.80%                | **82.20%**             | 39.61%                | **60.39%**             |
+|                      | HyDE                    | **LightRAG**           | HyDE                  | **LightRAG**           | HyDE                  | **LightRAG**           | HyDE                  | **LightRAG**           |
+| **Comprehensiveness** | 24.39%                  | **75.61%**             | 36.49%                | **63.51%**             | 27.68%                | **72.32%**             | 42.17%                | **57.83%**             |
+| **Diversity**         | 24.96%                  | **75.34%**             | 37.41%                | **62.59%**             | 18.79%                | **81.21%**             | 30.88%                | **69.12%**             |
+| **Empowerment**       | 24.89%                  | **75.11%**             | 34.99%                | **65.01%**             | 26.99%                | **73.01%**             | **45.61%**            | **54.39%**             |
+| **Overall**           | 23.17%                  | **76.83%**             | 35.67%                | **64.33%**             | 27.68%                | **72.32%**             | 42.72%                | **57.28%**             |
+|                      | GraphRAG                | **LightRAG**           | GraphRAG              | **LightRAG**           | GraphRAG              | **LightRAG**           | GraphRAG              | **LightRAG**           |
+| **Comprehensiveness** | 45.56%                  | **54.44%**             | 45.98%                | **54.02%**             | 47.13%                | **52.87%**             | **51.86%**            | 48.14%                |
+| **Diversity**         | 19.65%                  | **80.35%**             | 39.64%                | **60.36%**             | 25.55%                | **74.45%**             | 35.87%                | **64.13%**             |
+| **Empowerment**       | 36.69%                  | **63.31%**             | 45.09%                | **54.91%**             | 42.81%                | **57.19%**             | **52.94%**            | 47.06%                |
+| **Overall**           | 43.62%                  | **56.38%**             | 45.98%                | **54.02%**             | 45.70%                | **54.30%**             | **51.86%**            | 48.14%                |
+
+## Reproduce
+All the code can be found in the `./reproduce` directory.
+
+### Step-0 Extract Unique Contexts
+First, we need to extract unique contexts in the datasets.
+
+<details>
+<summary> Code </summary>
+
+```python
+def extract_unique_contexts(input_directory, output_directory):
+
+    os.makedirs(output_directory, exist_ok=True)
+
+    jsonl_files = glob.glob(os.path.join(input_directory, '*.jsonl'))
+    print(f"Found {len(jsonl_files)} JSONL files.")
+
+    for file_path in jsonl_files:
+        filename = os.path.basename(file_path)
+        name, ext = os.path.splitext(filename)
+        output_filename = f"{name}_unique_contexts.json"
+        output_path = os.path.join(output_directory, output_filename)
+
+        unique_contexts_dict = {}
+
+        print(f"Processing file: {filename}")
+
+        try:
+            with open(file_path, 'r', encoding='utf-8') as infile:
+                for line_number, line in enumerate(infile, start=1):
+                    line = line.strip()
+                    if not line:
+                        continue
+                    try:
+                        json_obj = json.loads(line)
+                        context = json_obj.get('context')
+                        if context and context not in unique_contexts_dict:
+                            unique_contexts_dict[context] = None
+                    except json.JSONDecodeError as e:
+                        print(f"JSON decoding error in file {filename} at line {line_number}: {e}")
+        except FileNotFoundError:
+            print(f"File not found: {filename}")
+            continue
+        except Exception as e:
+            print(f"An error occurred while processing file {filename}: {e}")
+            continue
+
+        unique_contexts_list = list(unique_contexts_dict.keys())
+        print(f"There are {len(unique_contexts_list)} unique `context` entries in the file {filename}.")
+
+        try:
+            with open(output_path, 'w', encoding='utf-8') as outfile:
+                json.dump(unique_contexts_list, outfile, ensure_ascii=False, indent=4)
+            print(f"Unique `context` entries have been saved to: {output_filename}")
+        except Exception as e:
+            print(f"An error occurred while saving to the file {output_filename}: {e}")
+
+    print("All files have been processed.")
+
+```
+</details>
+
+### Step-1 Insert Contexts
+For the extracted contexts, we insert them into the LightRAG system.
+
+<details>
+<summary> Code </summary>
+
+```python
+def insert_text(rag, file_path):
+    with open(file_path, mode='r') as f:
+        unique_contexts = json.load(f)
+
+    retries = 0
+    max_retries = 3
+    while retries < max_retries:
+        try:
+            rag.insert(unique_contexts)
+            break
+        except Exception as e:
+            retries += 1
+            print(f"Insertion failed, retrying ({retries}/{max_retries}), error: {e}")
+            time.sleep(10)
+    if retries == max_retries:
+        print("Insertion failed after exceeding the maximum number of retries")
+```
+</details>
+
+### Step-2 Generate Queries
+
+We extract tokens from the first and the second half of each context in the dataset, then combine them as dataset descriptions to generate queries.
+
+<details>
+<summary> Code </summary>
+
+```python
+tokenizer = GPT2Tokenizer.from_pretrained('gpt2')
+
+def get_summary(context, tot_tokens=2000):
+    tokens = tokenizer.tokenize(context)
+    half_tokens = tot_tokens // 2
+
+    start_tokens = tokens[1000:1000 + half_tokens]
+    end_tokens = tokens[-(1000 + half_tokens):1000]
+
+    summary_tokens = start_tokens + end_tokens
+    summary = tokenizer.convert_tokens_to_string(summary_tokens)
+
+    return summary
 ```
+</details>
+
+### Step-3 Query
+For the queries generated in Step-2, we will extract them and query LightRAG.
+
+<details>
+<summary> Code </summary>
+
+```python
+def extract_queries(file_path):
+    with open(file_path, 'r') as f:
+        data = f.read()
+
+    data = data.replace('**', '')
+
+    queries = re.findall(r'- Question \d+: (.+)', data)
+
+    return queries
+```
+</details>
+
+## Code Structure
+
+```python
+.
+├── examples
+│   ├── batch_eval.py
+│   ├── generate_query.py
+│   ├── graph_visual_with_html.py
+│   ├── graph_visual_with_neo4j.py
+│   ├── lightrag_api_openai_compatible_demo.py
+│   ├── lightrag_azure_openai_demo.py
+│   ├── lightrag_bedrock_demo.py
+│   ├── lightrag_hf_demo.py
+│   ├── lightrag_lmdeploy_demo.py
+│   ├── lightrag_ollama_demo.py
+│   ├── lightrag_openai_compatible_demo.py
+│   ├── lightrag_openai_demo.py
+│   ├── lightrag_siliconcloud_demo.py
+│   └── vram_management_demo.py
+├── lightrag
+│   ├── __init__.py
+│   ├── base.py
+│   ├── lightrag.py
+│   ├── llm.py
+│   ├── operate.py
+│   ├── prompt.py
+│   ├── storage.py
+│   └── utils.py
+├── reproduce
+│   ├── Step_0.py
+│   ├── Step_1_openai_compatible.py
+│   ├── Step_1.py
+│   ├── Step_2.py
+│   ├── Step_3_openai_compatible.py
+│   └── Step_3.py
+├── .gitignore
+├── .pre-commit-config.yaml
+├── LICENSE
+├── README.md
+├── requirements.txt
+└── setup.py
+```
+
+## Star History
+
+<a href="https://star-history.com/#HKUDS/LightRAG&Date">
+ <picture>
+   <source media="(prefers-color-scheme: dark)" srcset="https://api.star-history.com/svg?repos=HKUDS/LightRAG&type=Date&theme=dark" />
+   <source media="(prefers-color-scheme: light)" srcset="https://api.star-history.com/svg?repos=HKUDS/LightRAG&type=Date" />
+   <img alt="Star History Chart" src="https://api.star-history.com/svg?repos=HKUDS/LightRAG&type=Date" />
+ </picture>
+</a>
+
+## Citation
+
+```python
+@article{guo2024lightrag,
+title={LightRAG: Simple and Fast Retrieval-Augmented Generation},
+author={Zirui Guo and Lianghao Xia and Yanhua Yu and Tu Ao and Chao Huang},
+year={2024},
+eprint={2410.05779},
+archivePrefix={arXiv},
+primaryClass={cs.IR}
+}
+```
+