Merge pull request #8 from TianyuFan0504/main

lightrag/lightrag.py

@@ -5,7 +5,7 @@ from datetime import datetime
 from functools import partial
 from typing import Type, cast
 
-from .llm import gpt_4o_complete, gpt_4o_mini_complete, openai_embedding
+from .llm import gpt_4o_complete, gpt_4o_mini_complete, openai_embedding,hf_model_complete,hf_embedding
 from .operate import (
     chunking_by_token_size,
     extract_entities,
@@ -77,12 +77,14 @@ class LightRAG:
     )
 
     # text embedding
-    embedding_func: EmbeddingFunc = field(default_factory=lambda: openai_embedding)
+    # embedding_func: EmbeddingFunc = field(default_factory=lambda:hf_embedding)
+    embedding_func: EmbeddingFunc = field(default_factory=lambda:openai_embedding)# 
     embedding_batch_num: int = 32
     embedding_func_max_async: int = 16
 
     # LLM
-    llm_model_func: callable = gpt_4o_mini_complete
+    llm_model_func: callable = gpt_4o_mini_complete#hf_model_complete#
+    llm_model_name: str = 'meta-llama/Llama-3.2-1B-Instruct'#'meta-llama/Llama-3.2-1B'#'google/gemma-2-2b-it'
     llm_model_max_token_size: int = 32768
     llm_model_max_async: int = 16
 

lightrag/llm.py

@@ -7,10 +7,12 @@ from tenacity import (
     wait_exponential,
     retry_if_exception_type,
 )
-
+from transformers import AutoModel,AutoTokenizer, AutoModelForCausalLM
+import torch
 from .base import BaseKVStorage
 from .utils import compute_args_hash, wrap_embedding_func_with_attrs
-
+import copy
+os.environ["TOKENIZERS_PARALLELISM"] = "false"
 @retry(
     stop=stop_after_attempt(3),
     wait=wait_exponential(multiplier=1, min=4, max=10),
@@ -42,6 +44,52 @@ async def openai_complete_if_cache(
         )
     return response.choices[0].message.content
 
+async def hf_model_if_cache(
+    model, prompt, system_prompt=None, history_messages=[], **kwargs
+) -> str:
+    model_name = model
+    hf_tokenizer = AutoTokenizer.from_pretrained(model_name,device_map = 'auto')
+    if hf_tokenizer.pad_token == None:
+        # print("use eos token")
+        hf_tokenizer.pad_token = hf_tokenizer.eos_token
+    hf_model = AutoModelForCausalLM.from_pretrained(model_name,device_map = 'auto')
+    hashing_kv: BaseKVStorage = kwargs.pop("hashing_kv", None)
+    messages = []
+    if system_prompt:
+        messages.append({"role": "system", "content": system_prompt})
+    messages.extend(history_messages)
+    messages.append({"role": "user", "content": prompt})
+
+    if hashing_kv is not None:
+        args_hash = compute_args_hash(model, messages)
+        if_cache_return = await hashing_kv.get_by_id(args_hash)
+        if if_cache_return is not None:
+            return if_cache_return["return"]
+    input_prompt = ''
+    try:
+        input_prompt = hf_tokenizer.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)    
+    except:
+        try:
+            ori_message = copy.deepcopy(messages)
+            if messages[0]['role'] == "system":
+                messages[1]['content'] = "<system>" + messages[0]['content'] + "</system>\n" + messages[1]['content']
+                messages = messages[1:]
+                input_prompt = hf_tokenizer.apply_chat_template(messages, tokenize=False, add_generation_prompt=True)    
+        except:      
+            len_message = len(ori_message)
+            for msgid in range(len_message):
+                input_prompt =input_prompt+ '<'+ori_message[msgid]['role']+'>'+ori_message[msgid]['content']+'</'+ori_message[msgid]['role']+'>\n'
+    
+    input_ids = hf_tokenizer(input_prompt, return_tensors='pt', padding=True, truncation=True).to("cuda")
+    output = hf_model.generate(**input_ids, max_new_tokens=200, num_return_sequences=1,early_stopping = True)
+    response_text = hf_tokenizer.decode(output[0], skip_special_tokens=True)
+    if hashing_kv is not None:
+        await hashing_kv.upsert(
+            {args_hash: {"return": response_text, "model": model}}
+        )
+    return response_text
+
+
 async def gpt_4o_complete(
     prompt, system_prompt=None, history_messages=[], **kwargs
 ) -> str:
@@ -65,6 +113,20 @@ async def gpt_4o_mini_complete(
         **kwargs,
     )
 
+
+
+async def hf_model_complete(
+    prompt, system_prompt=None, history_messages=[], **kwargs
+) -> str:
+    input_string = kwargs['hashing_kv'].global_config['llm_model_name']
+    return await hf_model_if_cache(
+        input_string,
+        prompt,
+        system_prompt=system_prompt,
+        history_messages=history_messages,
+        **kwargs,
+    )
+
 @wrap_embedding_func_with_attrs(embedding_dim=1536, max_token_size=8192)
 @retry(
     stop=stop_after_attempt(3),
@@ -78,6 +140,24 @@ async def openai_embedding(texts: list[str]) -> np.ndarray:
     )
     return np.array([dp.embedding for dp in response.data])
 
+
+
+global EMBED_MODEL
+global tokenizer
+EMBED_MODEL = AutoModel.from_pretrained("sentence-transformers/all-MiniLM-L6-v2")
+tokenizer = AutoTokenizer.from_pretrained("sentence-transformers/all-MiniLM-L6-v2")
+@wrap_embedding_func_with_attrs(
+    embedding_dim=384,
+    max_token_size=5000,
+)
+async def hf_embedding(texts: list[str]) -> np.ndarray:
+    input_ids = tokenizer(texts, return_tensors='pt', padding=True, truncation=True).input_ids
+    with torch.no_grad():
+        outputs = EMBED_MODEL(input_ids)
+        embeddings = outputs.last_hidden_state.mean(dim=1)
+    return embeddings.detach().numpy()
+
+
 if __name__ == "__main__":
     import asyncio
 

lightrag/operate.py

@@ -3,7 +3,7 @@ import json
 import re
 from typing import Union
 from collections import Counter, defaultdict
-
+import warnings
 from .utils import (
     logger,
     clean_str,
@@ -398,10 +398,15 @@ async def local_query(
         keywords = keywords_data.get("low_level_keywords", [])
         keywords = ', '.join(keywords)
     except json.JSONDecodeError as e:
+        try:
+            result = result.replace(kw_prompt[:-1],'').replace('user','').replace('model','').strip().strip('```').strip('json')
+            keywords_data = json.loads(result)
+            keywords = keywords_data.get("low_level_keywords", [])
+            keywords = ', '.join(keywords)
         # Handle parsing error
-        print(f"JSON parsing error: {e}")
-        return PROMPTS["fail_response"]
-    
+        except json.JSONDecodeError as e:
+            print(f"JSON parsing error: {e}")
+            return PROMPTS["fail_response"]
     context = await _build_local_query_context(
         keywords,
         knowledge_graph_inst,
@@ -421,6 +426,9 @@ async def local_query(
         query,
         system_prompt=sys_prompt,
     )
+    if len(response)>len(sys_prompt):
+        response = response.replace(sys_prompt,'').replace('user','').replace('model','').replace(query,'').replace('<system>','').replace('</system>','').strip()
+    
     return response
 
 async def _build_local_query_context(
@@ -617,9 +625,16 @@ async def global_query(
         keywords = keywords_data.get("high_level_keywords", [])
         keywords = ', '.join(keywords)
     except json.JSONDecodeError as e:
-        # Handle parsing error
-        print(f"JSON parsing error: {e}")
-        return PROMPTS["fail_response"]
+        try:
+            result = result.replace(kw_prompt[:-1],'').replace('user','').replace('model','').strip().strip('```').strip('json')
+            keywords_data = json.loads(result)
+            keywords = keywords_data.get("high_level_keywords", [])
+            keywords = ', '.join(keywords)
+    
+        except json.JSONDecodeError as e:
+            # Handle parsing error
+            print(f"JSON parsing error: {e}")
+            return PROMPTS["fail_response"]
 
     context = await _build_global_query_context(
         keywords,
@@ -643,6 +658,9 @@ async def global_query(
         query,
         system_prompt=sys_prompt,
     )
+    if len(response)>len(sys_prompt):
+        response = response.replace(sys_prompt,'').replace('user','').replace('model','').replace(query,'').replace('<system>','').replace('</system>','').strip()
+    
     return response
 
 async def _build_global_query_context(
@@ -822,8 +840,8 @@ async def hybird_query(
 
     kw_prompt_temp = PROMPTS["keywords_extraction"]
     kw_prompt = kw_prompt_temp.format(query=query)
+    
     result = await use_model_func(kw_prompt)
-
     try:
         keywords_data = json.loads(result)
         hl_keywords = keywords_data.get("high_level_keywords", [])
@@ -831,10 +849,18 @@ async def hybird_query(
         hl_keywords = ', '.join(hl_keywords)
         ll_keywords = ', '.join(ll_keywords)
     except json.JSONDecodeError as e:
+        try:
+            result = result.replace(kw_prompt[:-1],'').replace('user','').replace('model','').strip().strip('```').strip('json')
+            keywords_data = json.loads(result)
+            hl_keywords = keywords_data.get("high_level_keywords", [])
+            ll_keywords = keywords_data.get("low_level_keywords", [])
+            hl_keywords = ', '.join(hl_keywords)
+            ll_keywords = ', '.join(ll_keywords)
         # Handle parsing error
-        print(f"JSON parsing error: {e}")
-        return PROMPTS["fail_response"]
-        
+        except json.JSONDecodeError as e:
+            print(f"JSON parsing error: {e}")
+            return PROMPTS["fail_response"]
+
     low_level_context = await _build_local_query_context(
         ll_keywords,
         knowledge_graph_inst,
@@ -851,7 +877,7 @@ async def hybird_query(
         text_chunks_db,
         query_param,
     )
-   
+
     context = combine_contexts(high_level_context, low_level_context)
 
     if query_param.only_need_context:
@@ -867,10 +893,13 @@ async def hybird_query(
         query,
         system_prompt=sys_prompt,
     )
+    if len(response)>len(sys_prompt):
+        response = response.replace(sys_prompt,'').replace('user','').replace('model','').replace(query,'').replace('<system>','').replace('</system>','').strip()
     return response
 
 def combine_contexts(high_level_context, low_level_context):
     # Function to extract entities, relationships, and sources from context strings
+
     def extract_sections(context):
         entities_match = re.search(r'-----Entities-----\s*```csv\s*(.*?)\s*```', context, re.DOTALL)
         relationships_match = re.search(r'-----Relationships-----\s*```csv\s*(.*?)\s*```', context, re.DOTALL)
@@ -883,8 +912,21 @@ def combine_contexts(high_level_context, low_level_context):
         return entities, relationships, sources
     
     # Extract sections from both contexts
-    hl_entities, hl_relationships, hl_sources = extract_sections(high_level_context)
-    ll_entities, ll_relationships, ll_sources = extract_sections(low_level_context)
+
+    if high_level_context==None:
+        warnings.warn("High Level context is None. Return empty High entity/relationship/source") 
+        hl_entities, hl_relationships, hl_sources = '','',''
+    else:
+        hl_entities, hl_relationships, hl_sources = extract_sections(high_level_context)
+
+
+    if low_level_context==None:
+        warnings.warn("Low Level context is None. Return empty Low entity/relationship/source")
+        ll_entities, ll_relationships, ll_sources = '','',''
+    else:
+        ll_entities, ll_relationships, ll_sources = extract_sections(low_level_context)
+
+
     
     # Combine and deduplicate the entities
     combined_entities_set = set(filter(None, hl_entities.strip().split('\n') + ll_entities.strip().split('\n')))
@@ -940,5 +982,9 @@ async def naive_query(
         query,
         system_prompt=sys_prompt,
     )
+
+    if len(response)>len(sys_prompt):
+        response = response[len(sys_prompt):].replace(sys_prompt,'').replace('user','').replace('model','').replace(query,'').replace('<system>','').replace('</system>','').strip()
+    
     return response