童石渊
commited on
Commit
·
9c6d163
1
Parent(s):
31f6fc8
增加仅字符分割参数,如果开启,仅采用字符分割,不开启,在分割完以后如果chunk过大,会继续根据token size分割,更新测试文件
Browse files- test.ipynb → examples/test_split_by_character.ipynb +708 -152
- lightrag/lightrag.py +12 -4
- lightrag/operate.py +20 -14
test.ipynb → examples/test_split_by_character.ipynb
RENAMED
@@ -6,8 +6,8 @@
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"id": "4b5690db12e34685",
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"metadata": {
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"import nest_asyncio"
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"source": [
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"nest_asyncio.apply()\n",
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"WORKING_DIR = \"
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"logging.basicConfig(format=\"%(levelname)s:%(message)s\", level=logging.INFO)\n",
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" prompt,\n",
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" system_prompt=system_prompt,\n",
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" history_messages=history_messages,\n",
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" api_key=
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" base_url=\"https://ark.cn-beijing.volces.com/api/v3\",\n",
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" )\n",
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" return await openai_embedding(\n",
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" texts,\n",
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" model=\"ep-20241231173413-pgjmk\",\n",
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" base_url=\"https://ark.cn-beijing.volces.com/api/v3\",\n",
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"name": "stderr",
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"INFO:lightrag:Logger initialized for working directory:
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"INFO:lightrag:Load KV llm_response_cache with 0 data\n",
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" embedding_func=EmbeddingFunc(\n",
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"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
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"prompt1 = \"\"\"
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"你是一名经验丰富的论文分析科学家,你的任务是对一篇英文学术研究论文进行关键信息提取并深入分析。\n",
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" - 查找队列收集结束时,研究对象年龄分布(平均值/中位值、标准差或范围),若信息缺失则根据年龄推理规则进行推理:当论文只提供了队列开展时对象的年龄,应根据队列结束时间推算最终年龄范围。例如:1989建立队列时年龄为25 - 42岁,随访至2011年结束,则推算年龄范围为47 - 64岁。\n",
|
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" - 确定队列研究时间线,即哪一年开始收集信息/建立队列,哪一年结束,若信息缺失则根据队列时间线推理规则进行推理:如论文只提供了建立队列时间为1995,进行了10年的随访,则推算队列结束时间为2005年。\n",
|
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" - 找出队列结束时实际参与研究人数是多少。\n",
|
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"首先在<分析>标签中,针对每个问题详细分析你的思考过程。然后在<回答>标签中给出所有问题的最终答案。\"\"\""
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" \"high_level_keywords\": [\"英文学术研究论文分析\", \"关键信息提取\", \"深入分析\"],\n",
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" \"low_level_keywords\": [\"研究队列\", \"队列名称\", \"队列开展国家\", \"性别分布\", \"年龄分布\", \"队列研究时间线\", \"实际参与研究人数\"]\n",
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{
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"output_type": "stream",
|
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"text": [
|
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|
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"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
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-
"INFO:lightrag:Global query uses
|
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|
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]
|
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},
|
@@ -679,38 +1236,37 @@
|
|
679 |
"output_type": "stream",
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"text": [
|
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"<分析>\n",
|
682 |
-
"-
|
683 |
-
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|
684 |
-
"-
|
685 |
-
"
|
686 |
-
"-
|
687 |
-
"
|
688 |
-
"- **队列收集结束时研究对象年龄分布**:\n",
|
689 |
-
" 已知“Mean (SD) age was 62.3 (11.0) years”是基线时年龄信息,“Median (interquartile range) duration of extended follow-up through December 31, 2007, was 78 (61 - 90) months”,由于随访的中位时间是78个月(约6.5年),所以可推算队列收集结束时研究对象年龄均值约为62.3 + 6.5 = 68.8岁(标准差仍为11.0年)。\n",
|
690 |
-
"- **队列研究时间线**:\n",
|
691 |
-
" 根据“2 randomized, double-blind, placebo-controlled clinical trials (Norwegian Vitamin [NORVIT] trial15 and Western Norway B Vitamin Intervention Trial [WENBIT]16) conducted between 1998 and 2005, and an observational posttrial follow-up through December 31, 2007”可知,队列开始收集信息时间为1998年,结束时间为2007年12月31日。\n",
|
692 |
-
"- **队列结束时实际参与研究人数**:\n",
|
693 |
-
" 由“A total of 6837 individuals were included in the combined analyses, of whom 6261 (91.6%) participated in posttrial follow-up”可知,队列结束时实际参与研究人数为6261人。\n",
|
694 |
"</分析>\n",
|
695 |
"\n",
|
696 |
"<回答>\n",
|
697 |
-
"-
|
698 |
-
"-
|
699 |
-
"-
|
700 |
-
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|
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-
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-
"-
|
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|
703 |
]
|
704 |
}
|
705 |
],
|
706 |
"source": [
|
707 |
-
"
|
|
|
708 |
]
|
709 |
},
|
710 |
{
|
711 |
"cell_type": "code",
|
712 |
"execution_count": null,
|
713 |
-
"id": "
|
714 |
"metadata": {},
|
715 |
"outputs": [],
|
716 |
"source": []
|
|
|
6 |
"id": "4b5690db12e34685",
|
7 |
"metadata": {
|
8 |
"ExecuteTime": {
|
9 |
+
"end_time": "2025-01-09T03:40:58.307102Z",
|
10 |
+
"start_time": "2025-01-09T03:40:51.935233Z"
|
11 |
}
|
12 |
},
|
13 |
"outputs": [],
|
|
|
21 |
"import nest_asyncio"
|
22 |
]
|
23 |
},
|
24 |
+
{
|
25 |
+
"cell_type": "markdown",
|
26 |
+
"id": "dd17956ec322b361",
|
27 |
+
"metadata": {},
|
28 |
+
"source": "#### split by character"
|
29 |
+
},
|
30 |
{
|
31 |
"cell_type": "code",
|
32 |
+
"execution_count": 3,
|
33 |
"id": "8c8ee7c061bf9159",
|
34 |
"metadata": {
|
35 |
"ExecuteTime": {
|
36 |
+
"end_time": "2025-01-09T03:41:13.961167Z",
|
37 |
+
"start_time": "2025-01-09T03:41:13.958357Z"
|
38 |
}
|
39 |
},
|
40 |
"outputs": [],
|
41 |
"source": [
|
42 |
"nest_asyncio.apply()\n",
|
43 |
+
"WORKING_DIR = \"../../llm_rag/paper_db/R000088_test1\"\n",
|
44 |
"logging.basicConfig(format=\"%(levelname)s:%(message)s\", level=logging.INFO)\n",
|
45 |
"if not os.path.exists(WORKING_DIR):\n",
|
46 |
" os.mkdir(WORKING_DIR)\n",
|
47 |
+
"API = os.environ.get(\"DOUBAO_API_KEY\")"
|
48 |
]
|
49 |
},
|
50 |
{
|
51 |
"cell_type": "code",
|
52 |
+
"execution_count": 4,
|
53 |
"id": "a5009d16e0851dca",
|
54 |
"metadata": {
|
55 |
"ExecuteTime": {
|
56 |
+
"end_time": "2025-01-09T03:41:16.862036Z",
|
57 |
+
"start_time": "2025-01-09T03:41:16.859306Z"
|
58 |
}
|
59 |
},
|
60 |
"outputs": [],
|
|
|
67 |
" prompt,\n",
|
68 |
" system_prompt=system_prompt,\n",
|
69 |
" history_messages=history_messages,\n",
|
70 |
+
" api_key=API,\n",
|
71 |
" base_url=\"https://ark.cn-beijing.volces.com/api/v3\",\n",
|
72 |
" **kwargs,\n",
|
73 |
" )\n",
|
|
|
77 |
" return await openai_embedding(\n",
|
78 |
" texts,\n",
|
79 |
" model=\"ep-20241231173413-pgjmk\",\n",
|
80 |
+
" api_key=API,\n",
|
81 |
" base_url=\"https://ark.cn-beijing.volces.com/api/v3\",\n",
|
82 |
" )"
|
83 |
]
|
84 |
},
|
85 |
{
|
86 |
"cell_type": "code",
|
87 |
+
"execution_count": 5,
|
88 |
"id": "397fcad24ce4d0ed",
|
89 |
"metadata": {
|
90 |
"ExecuteTime": {
|
91 |
+
"end_time": "2025-01-09T03:41:24.950307Z",
|
92 |
+
"start_time": "2025-01-09T03:41:24.940353Z"
|
93 |
}
|
94 |
},
|
95 |
"outputs": [
|
|
|
97 |
"name": "stderr",
|
98 |
"output_type": "stream",
|
99 |
"text": [
|
100 |
+
"INFO:lightrag:Logger initialized for working directory: ../../llm_rag/paper_db/R000088_test1\n",
|
101 |
"INFO:lightrag:Load KV llm_response_cache with 0 data\n",
|
102 |
"INFO:lightrag:Load KV full_docs with 0 data\n",
|
103 |
"INFO:lightrag:Load KV text_chunks with 0 data\n",
|
104 |
+
"INFO:nano-vectordb:Init {'embedding_dim': 4096, 'metric': 'cosine', 'storage_file': '../../llm_rag/paper_db/R000088_test1/vdb_entities.json'} 0 data\n",
|
105 |
+
"INFO:nano-vectordb:Init {'embedding_dim': 4096, 'metric': 'cosine', 'storage_file': '../../llm_rag/paper_db/R000088_test1/vdb_relationships.json'} 0 data\n",
|
106 |
+
"INFO:nano-vectordb:Init {'embedding_dim': 4096, 'metric': 'cosine', 'storage_file': '../../llm_rag/paper_db/R000088_test1/vdb_chunks.json'} 0 data\n",
|
107 |
"INFO:lightrag:Loaded document status storage with 0 records\n"
|
108 |
]
|
109 |
}
|
|
|
115 |
" embedding_func=EmbeddingFunc(\n",
|
116 |
" embedding_dim=4096, max_token_size=8192, func=embedding_func\n",
|
117 |
" ),\n",
|
118 |
+
" chunk_token_size=512,\n",
|
119 |
")"
|
120 |
]
|
121 |
},
|
122 |
{
|
123 |
"cell_type": "code",
|
124 |
+
"execution_count": 6,
|
125 |
"id": "1dc3603677f7484d",
|
126 |
"metadata": {
|
127 |
"ExecuteTime": {
|
128 |
+
"end_time": "2025-01-09T03:41:37.947456Z",
|
129 |
+
"start_time": "2025-01-09T03:41:37.941901Z"
|
130 |
}
|
131 |
},
|
132 |
"outputs": [],
|
133 |
"source": [
|
134 |
"with open(\n",
|
135 |
+
" \"../../llm_rag/example/R000088/auto/R000088_full_txt.md\", \"r\", encoding=\"utf-8\"\n",
|
136 |
") as f:\n",
|
137 |
" content = f.read()\n",
|
138 |
"\n",
|
|
|
141 |
" return await openai_embedding(\n",
|
142 |
" texts,\n",
|
143 |
" model=\"ep-20241231173413-pgjmk\",\n",
|
144 |
+
" api_key=API,\n",
|
145 |
" base_url=\"https://ark.cn-beijing.volces.com/api/v3\",\n",
|
146 |
" )\n",
|
147 |
"\n",
|
|
|
155 |
},
|
156 |
{
|
157 |
"cell_type": "code",
|
158 |
+
"execution_count": 7,
|
159 |
"id": "6844202606acfbe5",
|
160 |
"metadata": {
|
161 |
"ExecuteTime": {
|
162 |
+
"end_time": "2025-01-09T03:41:39.608541Z",
|
163 |
+
"start_time": "2025-01-09T03:41:39.165057Z"
|
164 |
}
|
165 |
},
|
166 |
"outputs": [
|
|
|
178 |
},
|
179 |
{
|
180 |
"cell_type": "code",
|
181 |
+
"execution_count": 8,
|
182 |
"id": "d6273839d9681403",
|
183 |
"metadata": {
|
184 |
"ExecuteTime": {
|
185 |
+
"end_time": "2025-01-09T03:44:34.295345Z",
|
186 |
+
"start_time": "2025-01-09T03:41:48.324171Z"
|
187 |
}
|
188 |
},
|
189 |
"outputs": [
|
|
|
192 |
"output_type": "stream",
|
193 |
"text": [
|
194 |
"INFO:lightrag:Processing 1 new unique documents\n",
|
195 |
+
"Processing batch 1: 0%| | 0/1 [00:00<?, ?it/s]INFO:lightrag:Inserting 35 vectors to chunks\n",
|
196 |
"\n",
|
197 |
+
"Generating embeddings: 0%| | 0/2 [00:00<?, ?batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
198 |
"\n",
|
199 |
+
"Generating embeddings: 50%|█████ | 1/2 [00:00<00:00, 1.36batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
200 |
"\n",
|
201 |
+
"Generating embeddings: 100%|██████████| 2/2 [00:04<00:00, 2.25s/batch]\u001b[A\n",
|
202 |
+
"\n",
|
203 |
+
"Extracting entities from chunks: 0%| | 0/35 [00:00<?, ?chunk/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
204 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
205 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
206 |
+
]
|
207 |
+
},
|
208 |
+
{
|
209 |
+
"name": "stdout",
|
210 |
+
"output_type": "stream",
|
211 |
+
"text": [
|
212 |
+
"⠙ Processed 1 chunks, 1 entities(duplicated), 0 relations(duplicated)\r"
|
213 |
+
]
|
214 |
+
},
|
215 |
+
{
|
216 |
+
"name": "stderr",
|
217 |
+
"output_type": "stream",
|
218 |
+
"text": [
|
219 |
+
"\n",
|
220 |
+
"Extracting entities from chunks: 3%|▎ | 1/35 [00:04<02:47, 4.93s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
221 |
+
]
|
222 |
+
},
|
223 |
+
{
|
224 |
+
"name": "stdout",
|
225 |
+
"output_type": "stream",
|
226 |
+
"text": [
|
227 |
+
"⠹ Processed 2 chunks, 2 entities(duplicated), 0 relations(duplicated)\r"
|
228 |
+
]
|
229 |
+
},
|
230 |
+
{
|
231 |
+
"name": "stderr",
|
232 |
+
"output_type": "stream",
|
233 |
+
"text": [
|
234 |
+
"\n",
|
235 |
+
"Extracting entities from chunks: 6%|▌ | 2/35 [00:05<01:18, 2.37s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
236 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
237 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
238 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
239 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
|
|
248 |
"name": "stdout",
|
249 |
"output_type": "stream",
|
250 |
"text": [
|
251 |
+
"⠸ Processed 3 chunks, 9 entities(duplicated), 5 relations(duplicated)\r"
|
252 |
]
|
253 |
},
|
254 |
{
|
|
|
256 |
"output_type": "stream",
|
257 |
"text": [
|
258 |
"\n",
|
259 |
+
"Extracting entities from chunks: 9%|▊ | 3/35 [00:26<05:43, 10.73s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
260 |
+
]
|
261 |
+
},
|
262 |
+
{
|
263 |
+
"name": "stdout",
|
264 |
+
"output_type": "stream",
|
265 |
+
"text": [
|
266 |
+
"⠼ Processed 4 chunks, 16 entities(duplicated), 11 relations(duplicated)\r"
|
267 |
+
]
|
268 |
+
},
|
269 |
+
{
|
270 |
+
"name": "stderr",
|
271 |
+
"output_type": "stream",
|
272 |
+
"text": [
|
273 |
+
"\n",
|
274 |
+
"Extracting entities from chunks: 11%|█▏ | 4/35 [00:26<03:24, 6.60s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
275 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
276 |
]
|
277 |
},
|
|
|
279 |
"name": "stdout",
|
280 |
"output_type": "stream",
|
281 |
"text": [
|
282 |
+
"⠴ Processed 5 chunks, 24 entities(duplicated), 18 relations(duplicated)\r"
|
283 |
]
|
284 |
},
|
285 |
{
|
|
|
287 |
"output_type": "stream",
|
288 |
"text": [
|
289 |
"\n",
|
290 |
+
"Extracting entities from chunks: 14%|█▍ | 5/35 [00:33<03:24, 6.82s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
291 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
292 |
]
|
293 |
},
|
|
|
295 |
"name": "stdout",
|
296 |
"output_type": "stream",
|
297 |
"text": [
|
298 |
+
"⠦ Processed 6 chunks, 35 entities(duplicated), 28 relations(duplicated)\r"
|
299 |
]
|
300 |
},
|
301 |
{
|
|
|
303 |
"output_type": "stream",
|
304 |
"text": [
|
305 |
"\n",
|
306 |
+
"Extracting entities from chunks: 17%|█▋ | 6/35 [00:42<03:38, 7.53s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
307 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
308 |
]
|
309 |
},
|
|
|
311 |
"name": "stdout",
|
312 |
"output_type": "stream",
|
313 |
"text": [
|
314 |
+
"⠧ Processed 7 chunks, 47 entities(duplicated), 36 relations(duplicated)\r"
|
315 |
]
|
316 |
},
|
317 |
{
|
|
|
319 |
"output_type": "stream",
|
320 |
"text": [
|
321 |
"\n",
|
322 |
+
"Extracting entities from chunks: 20%|██ | 7/35 [00:43<02:28, 5.31s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
323 |
]
|
324 |
},
|
325 |
{
|
326 |
"name": "stdout",
|
327 |
"output_type": "stream",
|
328 |
"text": [
|
329 |
+
"⠇ Processed 8 chunks, 61 entities(duplicated), 49 relations(duplicated)\r"
|
330 |
]
|
331 |
},
|
332 |
{
|
|
|
334 |
"output_type": "stream",
|
335 |
"text": [
|
336 |
"\n",
|
337 |
+
"Extracting entities from chunks: 23%|██▎ | 8/35 [00:45<01:52, 4.16s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
338 |
]
|
339 |
},
|
340 |
{
|
341 |
"name": "stdout",
|
342 |
"output_type": "stream",
|
343 |
"text": [
|
344 |
+
"⠏ Processed 9 chunks, 81 entities(duplicated), 49 relations(duplicated)\r"
|
345 |
+
]
|
346 |
+
},
|
347 |
+
{
|
348 |
+
"name": "stderr",
|
349 |
+
"output_type": "stream",
|
350 |
+
"text": [
|
351 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
352 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
353 |
+
]
|
354 |
+
},
|
355 |
+
{
|
356 |
+
"name": "stdout",
|
357 |
+
"output_type": "stream",
|
358 |
+
"text": [
|
359 |
+
"⠋ Processed 10 chunks, 90 entities(duplicated), 62 relations(duplicated)\r"
|
360 |
]
|
361 |
},
|
362 |
{
|
|
|
364 |
"output_type": "stream",
|
365 |
"text": [
|
366 |
"\n",
|
367 |
+
"Extracting entities from chunks: 29%|██▊ | 10/35 [00:46<01:06, 2.64s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
368 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
369 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
370 |
]
|
371 |
},
|
372 |
{
|
373 |
"name": "stdout",
|
374 |
"output_type": "stream",
|
375 |
"text": [
|
376 |
+
"⠙ Processed 11 chunks, 101 entities(duplicated), 80 relations(duplicated)\r"
|
377 |
]
|
378 |
},
|
379 |
{
|
|
|
381 |
"output_type": "stream",
|
382 |
"text": [
|
383 |
"\n",
|
384 |
+
"Extracting entities from chunks: 31%|███▏ | 11/35 [00:52<01:19, 3.31s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
385 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
386 |
]
|
387 |
},
|
|
|
389 |
"name": "stdout",
|
390 |
"output_type": "stream",
|
391 |
"text": [
|
392 |
+
"⠹ Processed 12 chunks, 108 entities(duplicated), 85 relations(duplicated)\r"
|
393 |
]
|
394 |
},
|
395 |
{
|
|
|
397 |
"output_type": "stream",
|
398 |
"text": [
|
399 |
"\n",
|
400 |
+
"Extracting entities from chunks: 34%|███▍ | 12/35 [00:54<01:11, 3.12s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
401 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
402 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
403 |
]
|
|
|
406 |
"name": "stdout",
|
407 |
"output_type": "stream",
|
408 |
"text": [
|
409 |
+
"⠸ Processed 13 chunks, 120 entities(duplicated), 100 relations(duplicated)\r"
|
410 |
+
]
|
411 |
+
},
|
412 |
+
{
|
413 |
+
"name": "stderr",
|
414 |
+
"output_type": "stream",
|
415 |
+
"text": [
|
416 |
+
"\n",
|
417 |
+
"Extracting entities from chunks: 37%|███▋ | 13/35 [00:59<01:18, 3.55s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
418 |
+
]
|
419 |
+
},
|
420 |
+
{
|
421 |
+
"name": "stdout",
|
422 |
+
"output_type": "stream",
|
423 |
+
"text": [
|
424 |
+
"⠼ Processed 14 chunks, 131 entities(duplicated), 110 relations(duplicated)\r"
|
425 |
+
]
|
426 |
+
},
|
427 |
+
{
|
428 |
+
"name": "stderr",
|
429 |
+
"output_type": "stream",
|
430 |
+
"text": [
|
431 |
+
"\n",
|
432 |
+
"Extracting entities from chunks: 40%|████ | 14/35 [01:00<00:59, 2.82s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
433 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
434 |
+
]
|
435 |
+
},
|
436 |
+
{
|
437 |
+
"name": "stdout",
|
438 |
+
"output_type": "stream",
|
439 |
+
"text": [
|
440 |
+
"⠴ Processed 15 chunks, 143 entities(duplicated), 110 relations(duplicated)\r"
|
441 |
]
|
442 |
},
|
443 |
{
|
|
|
445 |
"output_type": "stream",
|
446 |
"text": [
|
447 |
"\n",
|
448 |
+
"Extracting entities from chunks: 43%|████▎ | 15/35 [01:02<00:52, 2.64s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
449 |
]
|
450 |
},
|
451 |
{
|
452 |
"name": "stdout",
|
453 |
"output_type": "stream",
|
454 |
"text": [
|
455 |
+
"⠦ Processed 16 chunks, 162 entities(duplicated), 124 relations(duplicated)\r"
|
456 |
]
|
457 |
},
|
458 |
{
|
|
|
460 |
"output_type": "stream",
|
461 |
"text": [
|
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"\n",
|
463 |
+
"Extracting entities from chunks: 46%|████▌ | 16/35 [01:05<00:53, 2.80s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
464 |
+
]
|
465 |
+
},
|
466 |
+
{
|
467 |
+
"name": "stdout",
|
468 |
+
"output_type": "stream",
|
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+
"text": [
|
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+
"⠧ Processed 17 chunks, 174 entities(duplicated), 132 relations(duplicated)\r"
|
471 |
+
]
|
472 |
+
},
|
473 |
+
{
|
474 |
+
"name": "stderr",
|
475 |
+
"output_type": "stream",
|
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+
"text": [
|
477 |
+
"\n",
|
478 |
+
"Extracting entities from chunks: 49%|████▊ | 17/35 [01:06<00:39, 2.19s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
479 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
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+
]
|
481 |
+
},
|
482 |
+
{
|
483 |
+
"name": "stdout",
|
484 |
+
"output_type": "stream",
|
485 |
+
"text": [
|
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+
"⠇ Processed 18 chunks, 185 entities(duplicated), 137 relations(duplicated)\r"
|
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+
]
|
488 |
+
},
|
489 |
+
{
|
490 |
+
"name": "stderr",
|
491 |
+
"output_type": "stream",
|
492 |
+
"text": [
|
493 |
+
"\n",
|
494 |
+
"Extracting entities from chunks: 51%|█████▏ | 18/35 [01:12<00:53, 3.15s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
495 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
496 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
497 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
498 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
|
|
503 |
"name": "stdout",
|
504 |
"output_type": "stream",
|
505 |
"text": [
|
506 |
+
"⠏ Processed 19 chunks, 193 entities(duplicated), 149 relations(duplicated)\r"
|
507 |
]
|
508 |
},
|
509 |
{
|
|
|
511 |
"output_type": "stream",
|
512 |
"text": [
|
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"\n",
|
514 |
+
"Extracting entities from chunks: 54%|█████▍ | 19/35 [01:18<01:06, 4.14s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
515 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
516 |
]
|
517 |
},
|
518 |
{
|
519 |
"name": "stdout",
|
520 |
"output_type": "stream",
|
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"text": [
|
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+
"⠋ Processed 20 chunks, 205 entities(duplicated), 158 relations(duplicated)\r"
|
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]
|
524 |
},
|
525 |
{
|
|
|
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"output_type": "stream",
|
528 |
"text": [
|
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"\n",
|
530 |
+
"Extracting entities from chunks: 57%|█████▋ | 20/35 [01:19<00:50, 3.35s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
531 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
532 |
]
|
533 |
},
|
|
|
535 |
"name": "stdout",
|
536 |
"output_type": "stream",
|
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"text": [
|
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+
"⠙ Processed 21 chunks, 220 entities(duplicated), 187 relations(duplicated)\r"
|
539 |
]
|
540 |
},
|
541 |
{
|
|
|
543 |
"output_type": "stream",
|
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"text": [
|
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"\n",
|
546 |
+
"Extracting entities from chunks: 60%|██████ | 21/35 [01:27<01:02, 4.47s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
547 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
548 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
549 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
550 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
551 |
]
|
552 |
},
|
553 |
{
|
554 |
"name": "stdout",
|
555 |
"output_type": "stream",
|
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"text": [
|
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+
"⠹ Processed 22 chunks, 247 entities(duplicated), 216 relations(duplicated)\r"
|
558 |
]
|
559 |
},
|
560 |
{
|
|
|
562 |
"output_type": "stream",
|
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"text": [
|
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"\n",
|
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+
"Extracting entities from chunks: 63%|██████▎ | 22/35 [01:30<00:54, 4.16s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
566 |
]
|
567 |
},
|
568 |
{
|
569 |
"name": "stdout",
|
570 |
"output_type": "stream",
|
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"text": [
|
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+
"⠸ Processed 23 chunks, 260 entities(duplicated), 230 relations(duplicated)\r"
|
573 |
]
|
574 |
},
|
575 |
{
|
|
|
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"output_type": "stream",
|
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"text": [
|
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"\n",
|
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+
"Extracting entities from chunks: 66%|██████▌ | 23/35 [01:34<00:48, 4.05s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
581 |
]
|
582 |
},
|
583 |
{
|
584 |
"name": "stdout",
|
585 |
"output_type": "stream",
|
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"text": [
|
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+
"⠼ Processed 24 chunks, 291 entities(duplicated), 253 relations(duplicated)\r"
|
588 |
]
|
589 |
},
|
590 |
{
|
|
|
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"output_type": "stream",
|
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"text": [
|
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"\n",
|
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+
"Extracting entities from chunks: 69%|██████▊ | 24/35 [01:38<00:44, 4.03s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
596 |
]
|
597 |
},
|
598 |
{
|
599 |
"name": "stdout",
|
600 |
"output_type": "stream",
|
601 |
"text": [
|
602 |
+
"⠴ Processed 25 chunks, 304 entities(duplicated), 262 relations(duplicated)\r"
|
603 |
]
|
604 |
},
|
605 |
{
|
|
|
607 |
"output_type": "stream",
|
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"text": [
|
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"\n",
|
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+
"Extracting entities from chunks: 71%|███████▏ | 25/35 [01:41<00:36, 3.67s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
611 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
612 |
]
|
613 |
},
|
|
|
615 |
"name": "stdout",
|
616 |
"output_type": "stream",
|
617 |
"text": [
|
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+
"⠦ Processed 26 chunks, 313 entities(duplicated), 271 relations(duplicated)\r"
|
619 |
]
|
620 |
},
|
621 |
{
|
|
|
623 |
"output_type": "stream",
|
624 |
"text": [
|
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"\n",
|
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+
"Extracting entities from chunks: 74%|███████▍ | 26/35 [01:41<00:24, 2.76s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
627 |
]
|
628 |
},
|
629 |
{
|
630 |
"name": "stdout",
|
631 |
"output_type": "stream",
|
632 |
"text": [
|
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+
"⠧ Processed 27 chunks, 321 entities(duplicated), 283 relations(duplicated)\r"
|
634 |
]
|
635 |
},
|
636 |
{
|
|
|
638 |
"output_type": "stream",
|
639 |
"text": [
|
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"\n",
|
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+
"Extracting entities from chunks: 77%|███████▋ | 27/35 [01:47<00:28, 3.52s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
642 |
+
]
|
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+
},
|
644 |
+
{
|
645 |
+
"name": "stdout",
|
646 |
+
"output_type": "stream",
|
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+
"text": [
|
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+
"⠇ Processed 28 chunks, 333 entities(duplicated), 290 relations(duplicated)\r"
|
649 |
+
]
|
650 |
+
},
|
651 |
+
{
|
652 |
+
"name": "stderr",
|
653 |
+
"output_type": "stream",
|
654 |
+
"text": [
|
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+
"\n",
|
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+
"Extracting entities from chunks: 80%|████████ | 28/35 [01:52<00:28, 4.08s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
657 |
]
|
658 |
},
|
659 |
{
|
660 |
"name": "stdout",
|
661 |
"output_type": "stream",
|
662 |
"text": [
|
663 |
+
"⠏ Processed 29 chunks, 348 entities(duplicated), 307 relations(duplicated)\r"
|
664 |
]
|
665 |
},
|
666 |
{
|
|
|
668 |
"output_type": "stream",
|
669 |
"text": [
|
670 |
"\n",
|
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+
"Extracting entities from chunks: 83%|████████▎ | 29/35 [01:59<00:29, 4.88s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
672 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
673 |
]
|
674 |
},
|
|
|
676 |
"name": "stdout",
|
677 |
"output_type": "stream",
|
678 |
"text": [
|
679 |
+
"⠋ Processed 30 chunks, 362 entities(duplicated), 329 relations(duplicated)\r"
|
680 |
+
]
|
681 |
+
},
|
682 |
+
{
|
683 |
+
"name": "stderr",
|
684 |
+
"output_type": "stream",
|
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+
"text": [
|
686 |
+
"\n",
|
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+
"Extracting entities from chunks: 86%|████████▌ | 30/35 [02:02<00:21, 4.29s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
688 |
+
]
|
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+
},
|
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+
{
|
691 |
+
"name": "stdout",
|
692 |
+
"output_type": "stream",
|
693 |
+
"text": [
|
694 |
+
"⠙ Processed 31 chunks, 373 entities(duplicated), 337 relations(duplicated)\r"
|
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+
]
|
696 |
+
},
|
697 |
+
{
|
698 |
+
"name": "stderr",
|
699 |
+
"output_type": "stream",
|
700 |
+
"text": [
|
701 |
+
"\n",
|
702 |
+
"Extracting entities from chunks: 89%|████████▊ | 31/35 [02:03<00:13, 3.28s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
703 |
+
]
|
704 |
+
},
|
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+
{
|
706 |
+
"name": "stdout",
|
707 |
+
"output_type": "stream",
|
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+
"text": [
|
709 |
+
"⠹ Processed 32 chunks, 390 entities(duplicated), 369 relations(duplicated)\r"
|
710 |
+
]
|
711 |
+
},
|
712 |
+
{
|
713 |
+
"name": "stderr",
|
714 |
+
"output_type": "stream",
|
715 |
+
"text": [
|
716 |
+
"\n",
|
717 |
+
"Extracting entities from chunks: 91%|█████████▏| 32/35 [02:03<00:07, 2.55s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
718 |
+
]
|
719 |
+
},
|
720 |
+
{
|
721 |
+
"name": "stdout",
|
722 |
+
"output_type": "stream",
|
723 |
+
"text": [
|
724 |
+
"⠸ Processed 33 chunks, 405 entities(duplicated), 378 relations(duplicated)\r"
|
725 |
]
|
726 |
},
|
727 |
{
|
|
|
729 |
"output_type": "stream",
|
730 |
"text": [
|
731 |
"\n",
|
732 |
+
"Extracting entities from chunks: 94%|█████████▍| 33/35 [02:07<00:05, 2.84s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
733 |
]
|
734 |
},
|
735 |
{
|
736 |
"name": "stdout",
|
737 |
"output_type": "stream",
|
738 |
"text": [
|
739 |
+
"⠼ Processed 34 chunks, 435 entities(duplicated), 395 relations(duplicated)\r"
|
740 |
]
|
741 |
},
|
742 |
{
|
|
|
744 |
"output_type": "stream",
|
745 |
"text": [
|
746 |
"\n",
|
747 |
+
"Extracting entities from chunks: 97%|█████████▋| 34/35 [02:10<00:02, 2.94s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
748 |
+
]
|
749 |
+
},
|
750 |
+
{
|
751 |
+
"name": "stdout",
|
752 |
+
"output_type": "stream",
|
753 |
+
"text": [
|
754 |
+
"⠴ Processed 35 chunks, 456 entities(duplicated), 440 relations(duplicated)\r"
|
755 |
+
]
|
756 |
+
},
|
757 |
+
{
|
758 |
+
"name": "stderr",
|
759 |
+
"output_type": "stream",
|
760 |
+
"text": [
|
761 |
+
"\n",
|
762 |
+
"Extracting entities from chunks: 100%|██████████| 35/35 [02:23<00:00, 4.10s/chunk]\u001b[A\n",
|
763 |
"INFO:lightrag:Inserting entities into storage...\n",
|
764 |
"\n",
|
765 |
+
"Inserting entities: 100%|██████████| 324/324 [00:00<00:00, 17456.96entity/s]\n",
|
766 |
"INFO:lightrag:Inserting relationships into storage...\n",
|
767 |
"\n",
|
768 |
+
"Inserting relationships: 100%|██████████| 427/427 [00:00<00:00, 29956.31relationship/s]\n",
|
769 |
+
"INFO:lightrag:Inserting 324 vectors to entities\n",
|
770 |
"\n",
|
771 |
"Generating embeddings: 0%| | 0/11 [00:00<?, ?batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
772 |
"\n",
|
773 |
+
"Generating embeddings: 9%|▉ | 1/11 [00:00<00:06, 1.48batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
|
|
|
|
774 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
775 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
776 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
|
|
778 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
779 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
780 |
"\n",
|
781 |
+
"Generating embeddings: 18%|█▊ | 2/11 [00:02<00:11, 1.25s/batch]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
782 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
783 |
"\n",
|
784 |
+
"Generating embeddings: 27%|██▋ | 3/11 [00:02<00:06, 1.17batch/s]\u001b[A\n",
|
785 |
+
"Generating embeddings: 36%|███▋ | 4/11 [00:03<00:04, 1.50batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
786 |
"\n",
|
787 |
+
"Generating embeddings: 45%|████▌ | 5/11 [00:03<00:03, 1.78batch/s]\u001b[A\n",
|
788 |
+
"Generating embeddings: 55%|█████▍ | 6/11 [00:03<00:02, 2.01batch/s]\u001b[A\n",
|
789 |
+
"Generating embeddings: 64%|██████▎ | 7/11 [00:04<00:01, 2.19batch/s]\u001b[A\n",
|
790 |
+
"Generating embeddings: 73%|███████▎ | 8/11 [00:04<00:01, 2.31batch/s]\u001b[A\n",
|
791 |
+
"Generating embeddings: 82%|████████▏ | 9/11 [00:04<00:00, 2.41batch/s]\u001b[A\n",
|
792 |
+
"Generating embeddings: 91%|█████████ | 10/11 [00:05<00:00, 2.48batch/s]\u001b[A\n",
|
793 |
+
"Generating embeddings: 100%|██████████| 11/11 [00:05<00:00, 1.91batch/s]\u001b[A\n",
|
794 |
+
"INFO:lightrag:Inserting 427 vectors to relationships\n",
|
795 |
"\n",
|
796 |
+
"Generating embeddings: 0%| | 0/14 [00:00<?, ?batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
797 |
"\n",
|
798 |
+
"Generating embeddings: 7%|▋ | 1/14 [00:01<00:14, 1.11s/batch]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
799 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
800 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
801 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
802 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
803 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
804 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
805 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
806 |
"\n",
|
807 |
+
"Generating embeddings: 14%|█▍ | 2/14 [00:02<00:14, 1.18s/batch]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
808 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
809 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
810 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
811 |
"\n",
|
812 |
+
"Generating embeddings: 21%|██▏ | 3/14 [00:02<00:08, 1.23batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
813 |
"\n",
|
814 |
+
"Generating embeddings: 29%|██▊ | 4/14 [00:03<00:06, 1.56batch/s]\u001b[A\n",
|
815 |
+
"Generating embeddings: 36%|███▌ | 5/14 [00:03<00:04, 1.85batch/s]\u001b[A\n",
|
816 |
+
"Generating embeddings: 43%|████▎ | 6/14 [00:03<00:03, 2.05batch/s]\u001b[A\n",
|
817 |
+
"Generating embeddings: 50%|█████ | 7/14 [00:04<00:03, 2.23batch/s]\u001b[A\n",
|
818 |
+
"Generating embeddings: 57%|█████▋ | 8/14 [00:04<00:02, 2.37batch/s]\u001b[A\n",
|
819 |
+
"Generating embeddings: 64%|██████▍ | 9/14 [00:04<00:02, 2.46batch/s]\u001b[A\n",
|
820 |
+
"Generating embeddings: 71%|███████▏ | 10/14 [00:05<00:01, 2.54batch/s]\u001b[A\n",
|
821 |
+
"Generating embeddings: 79%|███████▊ | 11/14 [00:05<00:01, 2.59batch/s]\u001b[A\n",
|
822 |
+
"Generating embeddings: 86%|████████▌ | 12/14 [00:06<00:00, 2.64batch/s]\u001b[A\n",
|
823 |
+
"Generating embeddings: 93%|█████████▎| 13/14 [00:06<00:00, 2.65batch/s]\u001b[A\n",
|
824 |
+
"Generating embeddings: 100%|██████████| 14/14 [00:06<00:00, 2.05batch/s]\u001b[A\n",
|
825 |
+
"INFO:lightrag:Writing graph with 333 nodes, 427 edges\n",
|
826 |
+
"Processing batch 1: 100%|██████████| 1/1 [02:45<00:00, 165.90s/it]\n"
|
827 |
]
|
828 |
}
|
829 |
],
|
|
|
834 |
},
|
835 |
{
|
836 |
"cell_type": "code",
|
837 |
+
"execution_count": 9,
|
838 |
"id": "c4f9ae517151a01d",
|
839 |
"metadata": {
|
840 |
"ExecuteTime": {
|
841 |
+
"end_time": "2025-01-09T03:45:11.668987Z",
|
842 |
+
"start_time": "2025-01-09T03:45:11.664744Z"
|
843 |
}
|
844 |
},
|
845 |
"outputs": [],
|
846 |
"source": [
|
847 |
+
"prompt1 = \"\"\"你是一名经验丰富的论文分析科学家,你的任务是对一篇英文学术研究论文进行关键信息提取并深入分析。\n",
|
|
|
|
|
848 |
"请按照以下步骤进行分析:\n",
|
849 |
+
"1. 该文献主要研究的问题是什么?\n",
|
850 |
+
"2. 该文献采用什么方法进行分析?\n",
|
851 |
+
"3. 该文献的主要结论是什么?\n",
|
|
|
|
|
|
|
|
|
|
|
|
|
852 |
"首先在<分析>标签中,针对每个问题详细分析你的思考过程。然后在<回答>标签中给出所有问题的最终答案。\"\"\""
|
853 |
]
|
854 |
},
|
855 |
{
|
856 |
"cell_type": "code",
|
857 |
+
"execution_count": 10,
|
858 |
"id": "7a6491385b050095",
|
859 |
"metadata": {
|
860 |
"ExecuteTime": {
|
861 |
+
"end_time": "2025-01-09T03:45:40.829111Z",
|
862 |
+
"start_time": "2025-01-09T03:45:13.530298Z"
|
863 |
+
}
|
864 |
+
},
|
865 |
+
"outputs": [
|
866 |
+
{
|
867 |
+
"name": "stderr",
|
868 |
+
"output_type": "stream",
|
869 |
+
"text": [
|
870 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
871 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
872 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
873 |
+
"INFO:lightrag:Local query uses 5 entites, 12 relations, 3 text units\n",
|
874 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
875 |
+
"INFO:lightrag:Global query uses 8 entites, 5 relations, 4 text units\n",
|
876 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
877 |
+
]
|
878 |
+
},
|
879 |
+
{
|
880 |
+
"name": "stdout",
|
881 |
+
"output_type": "stream",
|
882 |
+
"text": [
|
883 |
+
"<分析>\n",
|
884 |
+
"1. **该文献主要研究的问题是什么?**\n",
|
885 |
+
" - 思考过程:通过浏览论文内容,查找作者明确阐述研究目的的部分。文中多处提及“Our study was performed to explore whether folic acid treatment was associated with cancer outcomes and all-cause mortality after extended follow-up”,表明作者旨在探究叶酸治疗与癌症结局及全因死亡率之间的关系,尤其是在经过长期随访后。\n",
|
886 |
+
"2. **该文献采用什么方法进行分析?**\n",
|
887 |
+
" - 思考过程:寻找描述研究方法和数据分析过程的段落。文中提到“Survival curves were constructed using the Kaplan-Meier method and differences in survival between groups were analyzed using the log-rank test. Estimates of hazard ratios (HRs) with 95% CIs were obtained by using Cox proportional hazards regression models stratified by trial”,可以看出作者使用了Kaplan-Meier法构建生存曲线、log-rank检验分析组间生存差异以及Cox比例风险回归模型估计风险比等方法。\n",
|
888 |
+
"3. **该文献的主要结论是什么?**\n",
|
889 |
+
" - 思考过程:定位到论文中总结结论的部分,如“Conclusion Treatment with folic acid plus vitamin $\\mathsf{B}_{12}$ was associated with increased cancer outcomes and all-cause mortality in patients with ischemic heart disease in Norway, where there is no folic acid fortification of foods”,可知作者得出叶酸加维生素$\\mathsf{B}_{12}$治疗与癌症结局和全因死亡率增加有关的结论。\n",
|
890 |
+
"<回答>\n",
|
891 |
+
"1. 该文献主要研究的问题是:叶酸治疗与癌症结局及全因死亡率之间的关系,尤其是在经过长期随访后,叶酸治疗是否与癌症结局和全因死亡率相关。\n",
|
892 |
+
"2. 该文献采用的分析方法包括:使用Kaplan-Meier法构建生存曲线、log-rank检验分析组间生存差异、Cox比例风险回归模型估计风险比等。\n",
|
893 |
+
"3. 该文献的主要结论是:在挪威没有叶酸强化食品的情况下,叶酸加维生素$\\mathsf{B}_{12}$治疗与缺血性心脏病患者的癌症结局和全因死亡率增加有关。\n",
|
894 |
+
"\n",
|
895 |
+
"**参考文献**\n",
|
896 |
+
"- [VD] In2Norwegianhomocysteine-lowering trialsamongpatientswithischemicheart disease, there was a statistically nonsignificantincreaseincancerincidenceinthe groupsassignedtofolicacidtreatment.15,16 Our study was performed to explore whetherfolicacidtreatmentwasassociatedwithcanceroutcomesandall-cause mortality after extended follow-up.\n",
|
897 |
+
"- [VD] Survivalcurveswereconstructedusing theKaplan-Meiermethodanddifferences insurvivalbetweengroupswereanalyzed usingthelog-ranktest.Estimatesofhazard ratios (HRs) with $95\\%$ CIs were obtainedbyusingCoxproportionalhazards regressionmodelsstratifiedbytrial.\n",
|
898 |
+
"- [VD] Conclusion Treatment with folic acid plus vitamin $\\mathsf{B}_{12}$ was associated with increased cancer outcomes and all-cause mortality in patients with ischemic heart disease in Norway, where there is no folic acid fortification of foods.\n"
|
899 |
+
]
|
900 |
+
}
|
901 |
+
],
|
902 |
+
"source": [
|
903 |
+
"resp = rag.query(prompt1, param=QueryParam(mode=\"mix\", top_k=5))\n",
|
904 |
+
"print(resp)"
|
905 |
+
]
|
906 |
+
},
|
907 |
+
{
|
908 |
+
"cell_type": "markdown",
|
909 |
+
"id": "4e5bfad24cb721a8",
|
910 |
+
"metadata": {},
|
911 |
+
"source": "#### split by character only"
|
912 |
+
},
|
913 |
+
{
|
914 |
+
"cell_type": "code",
|
915 |
+
"execution_count": 11,
|
916 |
+
"id": "44e2992dc95f8ce0",
|
917 |
+
"metadata": {
|
918 |
+
"ExecuteTime": {
|
919 |
+
"end_time": "2025-01-09T03:47:40.988796Z",
|
920 |
+
"start_time": "2025-01-09T03:47:40.982648Z"
|
921 |
+
}
|
922 |
+
},
|
923 |
+
"outputs": [],
|
924 |
+
"source": [
|
925 |
+
"WORKING_DIR = \"../../llm_rag/paper_db/R000088_test2\"\n",
|
926 |
+
"if not os.path.exists(WORKING_DIR):\n",
|
927 |
+
" os.mkdir(WORKING_DIR)"
|
928 |
+
]
|
929 |
+
},
|
930 |
+
{
|
931 |
+
"cell_type": "code",
|
932 |
+
"execution_count": 12,
|
933 |
+
"id": "62c63385d2d973d5",
|
934 |
+
"metadata": {
|
935 |
+
"ExecuteTime": {
|
936 |
+
"end_time": "2025-01-09T03:51:39.951329Z",
|
937 |
+
"start_time": "2025-01-09T03:49:15.218976Z"
|
938 |
}
|
939 |
},
|
940 |
"outputs": [
|
|
|
942 |
"name": "stderr",
|
943 |
"output_type": "stream",
|
944 |
"text": [
|
945 |
+
"INFO:lightrag:Logger initialized for working directory: ../../llm_rag/paper_db/R000088_test2\n",
|
946 |
+
"INFO:lightrag:Load KV llm_response_cache with 0 data\n",
|
947 |
+
"INFO:lightrag:Load KV full_docs with 0 data\n",
|
948 |
+
"INFO:lightrag:Load KV text_chunks with 0 data\n",
|
949 |
+
"INFO:nano-vectordb:Init {'embedding_dim': 4096, 'metric': 'cosine', 'storage_file': '../../llm_rag/paper_db/R000088_test2/vdb_entities.json'} 0 data\n",
|
950 |
+
"INFO:nano-vectordb:Init {'embedding_dim': 4096, 'metric': 'cosine', 'storage_file': '../../llm_rag/paper_db/R000088_test2/vdb_relationships.json'} 0 data\n",
|
951 |
+
"INFO:nano-vectordb:Init {'embedding_dim': 4096, 'metric': 'cosine', 'storage_file': '../../llm_rag/paper_db/R000088_test2/vdb_chunks.json'} 0 data\n",
|
952 |
+
"INFO:lightrag:Loaded document status storage with 0 records\n",
|
953 |
+
"INFO:lightrag:Processing 1 new unique documents\n",
|
954 |
+
"Processing batch 1: 0%| | 0/1 [00:00<?, ?it/s]INFO:lightrag:Inserting 12 vectors to chunks\n",
|
955 |
+
"\n",
|
956 |
+
"Generating embeddings: 0%| | 0/1 [00:00<?, ?batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
957 |
+
"\n",
|
958 |
+
"Generating embeddings: 100%|██████████| 1/1 [00:02<00:00, 2.95s/batch]\u001b[A\n",
|
959 |
+
"\n",
|
960 |
+
"Extracting entities from chunks: 0%| | 0/12 [00:00<?, ?chunk/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
961 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
962 |
+
]
|
963 |
+
},
|
964 |
+
{
|
965 |
+
"name": "stdout",
|
966 |
+
"output_type": "stream",
|
967 |
+
"text": [
|
968 |
+
"⠙ Processed 1 chunks, 0 entities(duplicated), 0 relations(duplicated)\r"
|
969 |
+
]
|
970 |
+
},
|
971 |
+
{
|
972 |
+
"name": "stderr",
|
973 |
+
"output_type": "stream",
|
974 |
+
"text": [
|
975 |
+
"\n",
|
976 |
+
"Extracting entities from chunks: 8%|▊ | 1/12 [00:03<00:43, 3.93s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
977 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
978 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
979 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
980 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
981 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
982 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
983 |
]
|
984 |
},
|
985 |
{
|
986 |
"name": "stdout",
|
987 |
"output_type": "stream",
|
988 |
"text": [
|
989 |
+
"⠹ Processed 2 chunks, 8 entities(duplicated), 8 relations(duplicated)\r"
|
|
|
|
|
|
|
990 |
]
|
991 |
},
|
992 |
+
{
|
993 |
+
"name": "stderr",
|
994 |
+
"output_type": "stream",
|
995 |
+
"text": [
|
996 |
+
"\n",
|
997 |
+
"Extracting entities from chunks: 17%|█▋ | 2/12 [00:29<02:44, 16.46s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
998 |
+
]
|
999 |
+
},
|
1000 |
+
{
|
1001 |
+
"name": "stdout",
|
1002 |
+
"output_type": "stream",
|
1003 |
+
"text": [
|
1004 |
+
"⠸ Processed 3 chunks, 17 entities(duplicated), 15 relations(duplicated)\r"
|
1005 |
+
]
|
1006 |
+
},
|
1007 |
+
{
|
1008 |
+
"name": "stderr",
|
1009 |
+
"output_type": "stream",
|
1010 |
+
"text": [
|
1011 |
+
"\n",
|
1012 |
+
"Extracting entities from chunks: 25%|██▌ | 3/12 [00:30<01:25, 9.45s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
1013 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1014 |
+
]
|
1015 |
+
},
|
1016 |
+
{
|
1017 |
+
"name": "stdout",
|
1018 |
+
"output_type": "stream",
|
1019 |
+
"text": [
|
1020 |
+
"⠼ Processed 4 chunks, 27 entities(duplicated), 22 relations(duplicated)\r"
|
1021 |
+
]
|
1022 |
+
},
|
1023 |
+
{
|
1024 |
+
"name": "stderr",
|
1025 |
+
"output_type": "stream",
|
1026 |
+
"text": [
|
1027 |
+
"\n",
|
1028 |
+
"Extracting entities from chunks: 33%|███▎ | 4/12 [00:39<01:16, 9.52s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1029 |
+
]
|
1030 |
+
},
|
1031 |
+
{
|
1032 |
+
"name": "stdout",
|
1033 |
+
"output_type": "stream",
|
1034 |
+
"text": [
|
1035 |
+
"⠴ Processed 5 chunks, 36 entities(duplicated), 33 relations(duplicated)\r"
|
1036 |
+
]
|
1037 |
+
},
|
1038 |
+
{
|
1039 |
+
"name": "stderr",
|
1040 |
+
"output_type": "stream",
|
1041 |
+
"text": [
|
1042 |
+
"\n",
|
1043 |
+
"Extracting entities from chunks: 42%|████▏ | 5/12 [00:40<00:43, 6.24s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
1044 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
1045 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1046 |
+
]
|
1047 |
+
},
|
1048 |
+
{
|
1049 |
+
"name": "stdout",
|
1050 |
+
"output_type": "stream",
|
1051 |
+
"text": [
|
1052 |
+
"⠦ Processed 6 chunks, 49 entities(duplicated), 42 relations(duplicated)\r"
|
1053 |
+
]
|
1054 |
+
},
|
1055 |
+
{
|
1056 |
+
"name": "stderr",
|
1057 |
+
"output_type": "stream",
|
1058 |
+
"text": [
|
1059 |
+
"\n",
|
1060 |
+
"Extracting entities from chunks: 50%|█████ | 6/12 [00:49<00:43, 7.33s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1061 |
+
]
|
1062 |
+
},
|
1063 |
+
{
|
1064 |
+
"name": "stdout",
|
1065 |
+
"output_type": "stream",
|
1066 |
+
"text": [
|
1067 |
+
"⠧ Processed 7 chunks, 62 entities(duplicated), 65 relations(duplicated)\r"
|
1068 |
+
]
|
1069 |
+
},
|
1070 |
+
{
|
1071 |
+
"name": "stderr",
|
1072 |
+
"output_type": "stream",
|
1073 |
+
"text": [
|
1074 |
+
"\n",
|
1075 |
+
"Extracting entities from chunks: 58%|█████▊ | 7/12 [01:05<00:50, 10.05s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
1076 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1077 |
+
]
|
1078 |
+
},
|
1079 |
+
{
|
1080 |
+
"name": "stdout",
|
1081 |
+
"output_type": "stream",
|
1082 |
+
"text": [
|
1083 |
+
"⠇ Processed 8 chunks, 81 entities(duplicated), 90 relations(duplicated)\r"
|
1084 |
+
]
|
1085 |
+
},
|
1086 |
+
{
|
1087 |
+
"name": "stderr",
|
1088 |
+
"output_type": "stream",
|
1089 |
+
"text": [
|
1090 |
+
"\n",
|
1091 |
+
"Extracting entities from chunks: 67%|██████▋ | 8/12 [01:23<00:50, 12.69s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1092 |
+
]
|
1093 |
+
},
|
1094 |
+
{
|
1095 |
+
"name": "stdout",
|
1096 |
+
"output_type": "stream",
|
1097 |
+
"text": [
|
1098 |
+
"⠏ Processed 9 chunks, 99 entities(duplicated), 117 relations(duplicated)\r"
|
1099 |
+
]
|
1100 |
+
},
|
1101 |
+
{
|
1102 |
+
"name": "stderr",
|
1103 |
+
"output_type": "stream",
|
1104 |
+
"text": [
|
1105 |
+
"\n",
|
1106 |
+
"Extracting entities from chunks: 75%|███████▌ | 9/12 [01:32<00:34, 11.54s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
1107 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1108 |
+
]
|
1109 |
+
},
|
1110 |
+
{
|
1111 |
+
"name": "stdout",
|
1112 |
+
"output_type": "stream",
|
1113 |
+
"text": [
|
1114 |
+
"⠋ Processed 10 chunks, 123 entities(duplicated), 140 relations(duplicated)\r"
|
1115 |
+
]
|
1116 |
+
},
|
1117 |
+
{
|
1118 |
+
"name": "stderr",
|
1119 |
+
"output_type": "stream",
|
1120 |
+
"text": [
|
1121 |
+
"\n",
|
1122 |
+
"Extracting entities from chunks: 83%|████████▎ | 10/12 [01:48<00:25, 12.79s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1123 |
+
]
|
1124 |
+
},
|
1125 |
+
{
|
1126 |
+
"name": "stdout",
|
1127 |
+
"output_type": "stream",
|
1128 |
+
"text": [
|
1129 |
+
"⠙ Processed 11 chunks, 158 entities(duplicated), 174 relations(duplicated)\r"
|
1130 |
+
]
|
1131 |
+
},
|
1132 |
+
{
|
1133 |
+
"name": "stderr",
|
1134 |
+
"output_type": "stream",
|
1135 |
+
"text": [
|
1136 |
+
"\n",
|
1137 |
+
"Extracting entities from chunks: 92%|█████████▏| 11/12 [02:03<00:13, 13.50s/chunk]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1138 |
+
]
|
1139 |
+
},
|
1140 |
+
{
|
1141 |
+
"name": "stdout",
|
1142 |
+
"output_type": "stream",
|
1143 |
+
"text": [
|
1144 |
+
"⠹ Processed 12 chunks, 194 entities(duplicated), 221 relations(duplicated)\r"
|
1145 |
+
]
|
1146 |
+
},
|
1147 |
+
{
|
1148 |
+
"name": "stderr",
|
1149 |
+
"output_type": "stream",
|
1150 |
+
"text": [
|
1151 |
+
"\n",
|
1152 |
+
"Extracting entities from chunks: 100%|██████████| 12/12 [02:13<00:00, 11.15s/chunk]\u001b[A\n",
|
1153 |
+
"INFO:lightrag:Inserting entities into storage...\n",
|
1154 |
+
"\n",
|
1155 |
+
"Inserting entities: 100%|██████████| 170/170 [00:00<00:00, 11610.25entity/s]\n",
|
1156 |
+
"INFO:lightrag:Inserting relationships into storage...\n",
|
1157 |
+
"\n",
|
1158 |
+
"Inserting relationships: 100%|██████████| 218/218 [00:00<00:00, 15913.51relationship/s]\n",
|
1159 |
+
"INFO:lightrag:Inserting 170 vectors to entities\n",
|
1160 |
+
"\n",
|
1161 |
+
"Generating embeddings: 0%| | 0/6 [00:00<?, ?batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1162 |
+
"\n",
|
1163 |
+
"Generating embeddings: 17%|█▋ | 1/6 [00:01<00:05, 1.10s/batch]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1164 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1165 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1166 |
+
"\n",
|
1167 |
+
"Generating embeddings: 33%|███▎ | 2/6 [00:02<00:04, 1.07s/batch]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1168 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1169 |
+
"\n",
|
1170 |
+
"Generating embeddings: 50%|█████ | 3/6 [00:02<00:02, 1.33batch/s]\u001b[A\n",
|
1171 |
+
"Generating embeddings: 67%|██████▋ | 4/6 [00:02<00:01, 1.67batch/s]\u001b[A\n",
|
1172 |
+
"Generating embeddings: 83%|████████▎ | 5/6 [00:03<00:00, 1.95batch/s]\u001b[A\n",
|
1173 |
+
"Generating embeddings: 100%|██████████| 6/6 [00:03<00:00, 1.66batch/s]\u001b[A\n",
|
1174 |
+
"INFO:lightrag:Inserting 218 vectors to relationships\n",
|
1175 |
+
"\n",
|
1176 |
+
"Generating embeddings: 0%| | 0/7 [00:00<?, ?batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1177 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1178 |
+
"\n",
|
1179 |
+
"Generating embeddings: 14%|█▍ | 1/7 [00:01<00:10, 1.74s/batch]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1180 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1181 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1182 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1183 |
+
"\n",
|
1184 |
+
"Generating embeddings: 29%|██▊ | 2/7 [00:02<00:05, 1.04s/batch]\u001b[A\n",
|
1185 |
+
"Generating embeddings: 43%|████▎ | 3/7 [00:02<00:02, 1.35batch/s]\u001b[A\n",
|
1186 |
+
"Generating embeddings: 57%|█████▋ | 4/7 [00:03<00:01, 1.69batch/s]\u001b[AINFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1187 |
+
"\n",
|
1188 |
+
"Generating embeddings: 71%|███████▏ | 5/7 [00:03<00:01, 1.96batch/s]\u001b[A\n",
|
1189 |
+
"Generating embeddings: 86%|████████▌ | 6/7 [00:03<00:00, 2.17batch/s]\u001b[A\n",
|
1190 |
+
"Generating embeddings: 100%|███���██████| 7/7 [00:04<00:00, 1.68batch/s]\u001b[A\n",
|
1191 |
+
"INFO:lightrag:Writing graph with 174 nodes, 218 edges\n",
|
1192 |
+
"Processing batch 1: 100%|██████████| 1/1 [02:24<00:00, 144.69s/it]\n"
|
1193 |
+
]
|
1194 |
+
}
|
1195 |
+
],
|
1196 |
+
"source": [
|
1197 |
+
"rag = LightRAG(\n",
|
1198 |
+
" working_dir=WORKING_DIR,\n",
|
1199 |
+
" llm_model_func=llm_model_func,\n",
|
1200 |
+
" embedding_func=EmbeddingFunc(\n",
|
1201 |
+
" embedding_dim=4096, max_token_size=8192, func=embedding_func\n",
|
1202 |
+
" ),\n",
|
1203 |
+
" chunk_token_size=512,\n",
|
1204 |
+
")\n",
|
1205 |
+
"\n",
|
1206 |
+
"# rag.insert(content)\n",
|
1207 |
+
"rag.insert(content, split_by_character=\"\\n#\", split_by_character_only=True)"
|
1208 |
+
]
|
1209 |
+
},
|
1210 |
+
{
|
1211 |
+
"cell_type": "code",
|
1212 |
+
"execution_count": 13,
|
1213 |
+
"id": "3c7aa9836d8d43c7",
|
1214 |
+
"metadata": {
|
1215 |
+
"ExecuteTime": {
|
1216 |
+
"end_time": "2025-01-09T03:52:37.000418Z",
|
1217 |
+
"start_time": "2025-01-09T03:52:09.933584Z"
|
1218 |
+
}
|
1219 |
+
},
|
1220 |
+
"outputs": [
|
1221 |
{
|
1222 |
"name": "stderr",
|
1223 |
"output_type": "stream",
|
1224 |
"text": [
|
1225 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1226 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n",
|
1227 |
+
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1228 |
+
"INFO:lightrag:Local query uses 5 entites, 3 relations, 2 text units\n",
|
1229 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/embeddings \"HTTP/1.1 200 OK\"\n",
|
1230 |
+
"INFO:lightrag:Global query uses 9 entites, 5 relations, 4 text units\n",
|
1231 |
"INFO:httpx:HTTP Request: POST https://ark.cn-beijing.volces.com/api/v3/chat/completions \"HTTP/1.1 200 OK\"\n"
|
1232 |
]
|
1233 |
},
|
|
|
1236 |
"output_type": "stream",
|
1237 |
"text": [
|
1238 |
"<分析>\n",
|
1239 |
+
"- **该文献主要研究的问题是什么?**\n",
|
1240 |
+
" - **思考过程**:通过浏览论文的标题、摘要、引言等部分,寻找关于研究目的和问题的描述。论文标题为“Cancer Incidence and Mortality After Treatment With Folic Acid and Vitamin B12”,摘要中的“Objective”部分明确指出研究目的是“To evaluate effects of treatment with B vitamins on cancer outcomes and all-cause mortality in 2 randomized controlled trials”。因此,可以确定该文献主要研究的问题是评估B族维生素治疗对两项随机对照试验中癌症结局和全因死亡率的影响。\n",
|
1241 |
+
"- **该文献采用什么方法进行分析?**\n",
|
1242 |
+
" - **思考过程**:在论文的“METHODS”部分详细描述了研究方法。文中提到这是一个对两项随机、双盲、安慰剂对照临床试验(Norwegian Vitamin [NORVIT] trial和Western Norway B Vitamin Intervention Trial [WENBIT])数据的联合分析,并进行了观察性的试验后随访。具体包括对参与者进行分组干预(不同剂量的叶酸、维生素B12、维生素B6或安慰剂),收集临床信息和血样,分析循环B族维生素、同型半胱氨酸和可替宁等指标,并进行基因分型等,还涉及到多种统计分析方法,如计算预期癌症发生率、构建生存曲线、进行Cox比例风险回归模型分析等。\n",
|
1243 |
+
"- **该文献的主要结论是什么?**\n",
|
1244 |
+
" - **思考过程**:在论文的“Results”和“Conclusion”部分寻找主要结论。研究结果表明,在治疗期间,接受叶酸加维生素B12治疗的参与者血清叶酸浓度显著增加,且在后续随访中,该组癌症发病率、癌症死亡率和全因死亡率均有所上升,主要是肺癌发病率增加,而维生素B6治疗未显示出显著影响。结论部分明确指出“Treatment with folic acid plus vitamin $\\mathsf{B}_{12}$ was associated with increased cancer outcomes and all-cause mortality in patients with ischemic heart disease in Norway, where there is no folic acid fortification of foods”。\n",
|
|
|
|
|
|
|
|
|
|
|
|
|
1245 |
"</分析>\n",
|
1246 |
"\n",
|
1247 |
"<回答>\n",
|
1248 |
+
"- **主要研究问题**:评估B族维生素治疗对两项随机对照试验中癌症结局和全因死亡率的影响。\n",
|
1249 |
+
"- **研究方法**:采用对两项随机、双盲、安慰剂对照临床试验(Norwegian Vitamin [NORVIT] trial和Western Norway B Vitamin Intervention Trial [WENBIT])数据的联合分析,并进行观察性的试验后随访,涉及分组干预、多种指标检测以及多种统计分析方法。\n",
|
1250 |
+
"- **主要结论**:在挪威(食品中未添加叶酸),对于缺血性心脏病患者,叶酸加维生素B12治疗与癌症结局和全因死亡率的增加有关,而维生素B6治疗未显示出显著影响。\n",
|
1251 |
+
"\n",
|
1252 |
+
"**参考文献**\n",
|
1253 |
+
"- [VD] Cancer Incidence and Mortality After Treatment With Folic Acid and Vitamin B12\n",
|
1254 |
+
"- [VD] METHODS Study Design, Participants, and Study Intervention\n",
|
1255 |
+
"- [VD] RESULTS\n",
|
1256 |
+
"- [VD] Conclusion\n",
|
1257 |
+
"- [VD] Objective To evaluate effects of treatment with B vitamins on cancer outcomes and all-cause mortality in 2 randomized controlled trials.\n"
|
1258 |
]
|
1259 |
}
|
1260 |
],
|
1261 |
"source": [
|
1262 |
+
"resp = rag.query(prompt1, param=QueryParam(mode=\"mix\", top_k=5))\n",
|
1263 |
+
"print(resp)"
|
1264 |
]
|
1265 |
},
|
1266 |
{
|
1267 |
"cell_type": "code",
|
1268 |
"execution_count": null,
|
1269 |
+
"id": "7ba6fa79a2550d10",
|
1270 |
"metadata": {},
|
1271 |
"outputs": [],
|
1272 |
"source": []
|
lightrag/lightrag.py
CHANGED
@@ -314,18 +314,25 @@ class LightRAG:
|
|
314 |
"JsonDocStatusStorage": JsonDocStatusStorage,
|
315 |
}
|
316 |
|
317 |
-
def insert(
|
|
|
|
|
318 |
loop = always_get_an_event_loop()
|
319 |
return loop.run_until_complete(
|
320 |
-
self.ainsert(string_or_strings, split_by_character)
|
321 |
)
|
322 |
|
323 |
-
async def ainsert(
|
|
|
|
|
324 |
"""Insert documents with checkpoint support
|
325 |
|
326 |
Args:
|
327 |
string_or_strings: Single document string or list of document strings
|
328 |
-
split_by_character: if split_by_character is not None, split the string by character
|
|
|
|
|
|
|
329 |
"""
|
330 |
if isinstance(string_or_strings, str):
|
331 |
string_or_strings = [string_or_strings]
|
@@ -384,6 +391,7 @@ class LightRAG:
|
|
384 |
for dp in chunking_by_token_size(
|
385 |
doc["content"],
|
386 |
split_by_character=split_by_character,
|
|
|
387 |
overlap_token_size=self.chunk_overlap_token_size,
|
388 |
max_token_size=self.chunk_token_size,
|
389 |
tiktoken_model=self.tiktoken_model_name,
|
|
|
314 |
"JsonDocStatusStorage": JsonDocStatusStorage,
|
315 |
}
|
316 |
|
317 |
+
def insert(
|
318 |
+
self, string_or_strings, split_by_character=None, split_by_character_only=False
|
319 |
+
):
|
320 |
loop = always_get_an_event_loop()
|
321 |
return loop.run_until_complete(
|
322 |
+
self.ainsert(string_or_strings, split_by_character, split_by_character_only)
|
323 |
)
|
324 |
|
325 |
+
async def ainsert(
|
326 |
+
self, string_or_strings, split_by_character, split_by_character_only
|
327 |
+
):
|
328 |
"""Insert documents with checkpoint support
|
329 |
|
330 |
Args:
|
331 |
string_or_strings: Single document string or list of document strings
|
332 |
+
split_by_character: if split_by_character is not None, split the string by character, if chunk longer than
|
333 |
+
chunk_size, split the sub chunk by token size.
|
334 |
+
split_by_character_only: if split_by_character_only is True, split the string by character only, when
|
335 |
+
split_by_character is None, this parameter is ignored.
|
336 |
"""
|
337 |
if isinstance(string_or_strings, str):
|
338 |
string_or_strings = [string_or_strings]
|
|
|
391 |
for dp in chunking_by_token_size(
|
392 |
doc["content"],
|
393 |
split_by_character=split_by_character,
|
394 |
+
split_by_character_only=split_by_character_only,
|
395 |
overlap_token_size=self.chunk_overlap_token_size,
|
396 |
max_token_size=self.chunk_token_size,
|
397 |
tiktoken_model=self.tiktoken_model_name,
|
lightrag/operate.py
CHANGED
@@ -36,6 +36,7 @@ import time
|
|
36 |
def chunking_by_token_size(
|
37 |
content: str,
|
38 |
split_by_character=None,
|
|
|
39 |
overlap_token_size=128,
|
40 |
max_token_size=1024,
|
41 |
tiktoken_model="gpt-4o",
|
@@ -45,21 +46,26 @@ def chunking_by_token_size(
|
|
45 |
if split_by_character:
|
46 |
raw_chunks = content.split(split_by_character)
|
47 |
new_chunks = []
|
48 |
-
|
49 |
-
|
50 |
-
|
51 |
-
for start in range(
|
52 |
-
0, len(_tokens), max_token_size - overlap_token_size
|
53 |
-
):
|
54 |
-
chunk_content = decode_tokens_by_tiktoken(
|
55 |
-
_tokens[start : start + max_token_size],
|
56 |
-
model_name=tiktoken_model,
|
57 |
-
)
|
58 |
-
new_chunks.append(
|
59 |
-
(min(max_token_size, len(_tokens) - start), chunk_content)
|
60 |
-
)
|
61 |
-
else:
|
62 |
new_chunks.append((len(_tokens), chunk))
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
63 |
for index, (_len, chunk) in enumerate(new_chunks):
|
64 |
results.append(
|
65 |
{
|
|
|
36 |
def chunking_by_token_size(
|
37 |
content: str,
|
38 |
split_by_character=None,
|
39 |
+
split_by_character_only=False,
|
40 |
overlap_token_size=128,
|
41 |
max_token_size=1024,
|
42 |
tiktoken_model="gpt-4o",
|
|
|
46 |
if split_by_character:
|
47 |
raw_chunks = content.split(split_by_character)
|
48 |
new_chunks = []
|
49 |
+
if split_by_character_only:
|
50 |
+
for chunk in raw_chunks:
|
51 |
+
_tokens = encode_string_by_tiktoken(chunk, model_name=tiktoken_model)
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
52 |
new_chunks.append((len(_tokens), chunk))
|
53 |
+
else:
|
54 |
+
for chunk in raw_chunks:
|
55 |
+
_tokens = encode_string_by_tiktoken(chunk, model_name=tiktoken_model)
|
56 |
+
if len(_tokens) > max_token_size:
|
57 |
+
for start in range(
|
58 |
+
0, len(_tokens), max_token_size - overlap_token_size
|
59 |
+
):
|
60 |
+
chunk_content = decode_tokens_by_tiktoken(
|
61 |
+
_tokens[start : start + max_token_size],
|
62 |
+
model_name=tiktoken_model,
|
63 |
+
)
|
64 |
+
new_chunks.append(
|
65 |
+
(min(max_token_size, len(_tokens) - start), chunk_content)
|
66 |
+
)
|
67 |
+
else:
|
68 |
+
new_chunks.append((len(_tokens), chunk))
|
69 |
for index, (_len, chunk) in enumerate(new_chunks):
|
70 |
results.append(
|
71 |
{
|