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  1. README.md +29 -23
README.md CHANGED
@@ -13,32 +13,38 @@ tags:
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  pretty_name: Hu 2007/Reimand 2010 TFKO
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  size_categories:
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  - 1M<n<10M
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- dataset_info:
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- features:
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- - name: regulator_locus_tag
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- dtype: string
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- description: induced transcriptional regulator systematic ID. See hf/BrentLab/yeast_genome_resources
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- - name: regulator_symbol
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- dtype: string
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- description: induced transcriptional regulator common name. If no common name exists, then the `regulator_locus_tag` is used.
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- - name: target_locus_tag
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- dtype: string
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- description: The systematic ID of the feature to which the effect/pvalue is assigned. See hf/BrentLab/yeast_genome_resources
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- - name: target_symbol
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- dtype: string
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- description: The common name of the feature to which the effect/pvalue is assigned. If there is no common name, the `target_locus_tag` is used.
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- - name: M
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- dtype: float
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- description: log₂ fold change (mutant vs wildtype)
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- - name: A
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- dtype: float
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- description: average log₂ intensity of the two channels, a proxy for expression level (This is a guess based on microarray convention -- not specified on holstege site)
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- - name: Madj
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- dtype: float
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- description: M value with the cell cycle signal removed (see paper cited in the introduction above)
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  configs:
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  - config_name: data
 
 
 
 
 
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  default: true
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  ---
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  # Hu 2007 / Reimand 2010
 
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  pretty_name: Hu 2007/Reimand 2010 TFKO
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  size_categories:
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  - 1M<n<10M
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+
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  configs:
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  - config_name: data
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+ description: Regulator knockout expression data from Hu 2007 / Reimand 2010
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+ dataset_type: annotated_features
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+ data_files:
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+ - split: train
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+ path: hu_2007_reimand_2010.parquet
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  default: true
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+ dataset_info:
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+ features:
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+ - name: regulator_locus_tag
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+ dtype: string
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+ description: induced transcriptional regulator systematic ID. See hf/BrentLab/yeast_genome_resources
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+ - name: regulator_symbol
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+ dtype: string
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+ description: induced transcriptional regulator common name. If no common name exists, then the `regulator_locus_tag` is used.
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+ - name: target_locus_tag
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+ dtype: string
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+ description: The systematic ID of the feature to which the effect/pvalue is assigned. See hf/BrentLab/yeast_genome_resources
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+ - name: target_symbol
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+ dtype: string
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+ description: The common name of the feature to which the effect/pvalue is assigned. If there is no common name, the `target_locus_tag` is used.
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+ - name: M
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+ dtype: float
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+ description: log₂ fold change (mutant vs wildtype)
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+ - name: A
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+ dtype: float
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+ description: average log₂ intensity of the two channels, a proxy for expression level (This is a guess based on microarray convention -- not specified on holstege site)
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+ - name: Madj
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+ dtype: float
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+ description: M value with the cell cycle signal removed (see paper cited in the introduction above)
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  ---
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  # Hu 2007 / Reimand 2010