Datasets:

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DataQuests

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Dyna_Repo_Inria_MDPosit_complete_metadata

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Data Quests for Open Science 12

Error code:   FeaturesError
Exception:    ArrowInvalid
Message:      Schema at index 1 was different: 
accession: string
published: bool
metadata: struct<NAME: string, DESCRIPTION: string, AUTHORS: list<item: string>, GROUPS: list<item: string>, CONTACT: string, PROGRAM: string, VERSION: string, TYPE: string, METHOD: string, LICENSE: string, LINKCENSE: string, CITATION: string, THANKS: string, LINKS: null, PDBIDS: list<item: string>, FORCED_REFERENCES: null, REFERENCES: list<item: string>, INPUT_LIGANDS: null, LIGANDS: list<item: null>, LIGANDNAMES: null, PROTSEQ: list<item: string>, NUCLSEQ: list<item: null>, DOMAINS: list<item: string>, FRAMESTEP: double, TIMESTEP: int64, TEMP: int64, ENSEMBLE: string, FF: list<item: string>, WAT: string, BOXTYPE: string, SYSTATS: int64, SYSTRES: int64, PROTATS: int64, PROTRES: int64, NUCLATS: int64, NUCLRES: int64, LIPIATS: int64, LIPIRES: int64, CARBATS: int64, CARBRES: int64, SOLVATS: int64, SOLVRES: int64, COUNCAT: int64, COUNANI: int64, COUNION: int64, INTERACTIONS: list<item: struct<name: string, agent_1: string, agent_2: string, selection_1: string, selection_2: string, type: string>>, PBC_SELECTION: null, CHAINNAMES: null, MEMBRANES: null, CUSTOMS: null, ORIENTATION: null, PTM: list<item: null>, MULTIMERIC: null, COLLECTIONS: string, WARNINGS: list<item: null>, BOXSIZEX: double, BOXSIZEY: double, BOXSIZEZ: double, mdName: string, mdAtoms: int64, mdFrames: int64>
mds: list<item: string>
mdref: int64
files: list<item: string>
analyses: list<item: string>
mdIndex: int64
mdNumber: int64
refframe: int64
internalId: string
creationDate: string
identifier: string
vs
project_identifier: string
accession: string
published: bool
md_index: int64
md_name: string
analyses: list<item: string>
chains: list<item: null>
metadata: struct<NAME: string, DESCRIPTION: string, AUTHORS: list<item: string>, GROUPS: list<item: string>, CONTACT: string, PROGRAM: string, VERSION: string, TYPE: string, METHOD: string, LICENSE: string, LINKCENSE: string, CITATION: string, THANKS: string, LINKS: null, PDBIDS: list<item: string>, FORCED_REFERENCES: null, REFERENCES: list<item: string>, INPUT_LIGANDS: null, LIGANDS: list<item: null>, LIGANDNAMES: null, PROTSEQ: list<item: string>, NUCLSEQ: list<item: null>, DOMAINS: list<item: string>, FRAMESTEP: double, TIMESTEP: int64, TEMP: int64, ENSEMBLE: string, FF: list<item: string>, WAT: string, BOXTYPE: string, SYSTATS: int64, SYSTRES: int64, PROTATS: int64, PROTRES: int64, NUCLATS: int64, NUCLRES: int64, LIPIATS: int64, LIPIRES: int64, CARBATS: int64, CARBRES: int64, SOLVATS: int64, SOLVRES: int64, COUNCAT: int64, COUNANI: int64, COUNION: int64, INTERACTIONS: list<item: struct<name: string, agent_1: string, agent_2: string, selection_1: string, selection_2: string, type: string>>, PBC_SELECTION: null, CHAINNAMES: null, MEMBRANES: null, CUSTOMS: null, ORIENTATION: null, PTM: list<item: null>, MULTIMERIC: null, COLLECTIONS: string, WARNINGS: list<item: null>, BOXSIZEX: double, BOXSIZEY: double, BOXSIZEZ: double, mdName: string, mdAtoms: int64, mdFrames: int64>
files: list<item: struct<name: string, downloadUrl: string, length: int64, contentType: string, metadata: struct<project: string, md: int64, frames: int64, atoms: int64>>>
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/split/first_rows.py", line 228, in compute_first_rows_from_streaming_response
                  iterable_dataset = iterable_dataset._resolve_features()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 3422, in _resolve_features
                  features = _infer_features_from_batch(self.with_format(None)._head())
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2187, in _head
                  return next(iter(self.iter(batch_size=n)))
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2391, in iter
                  for key, example in iterator:
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1882, in __iter__
                  for key, pa_table in self._iter_arrow():
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1904, in _iter_arrow
                  yield from self.ex_iterable._iter_arrow()
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 527, in _iter_arrow
                  yield new_key, pa.Table.from_batches(chunks_buffer)
                File "pyarrow/table.pxi", line 4116, in pyarrow.lib.Table.from_batches
                File "pyarrow/error.pxi", line 154, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 91, in pyarrow.lib.check_status
              pyarrow.lib.ArrowInvalid: Schema at index 1 was different: 
              accession: string
              published: bool
              metadata: struct<NAME: string, DESCRIPTION: string, AUTHORS: list<item: string>, GROUPS: list<item: string>, CONTACT: string, PROGRAM: string, VERSION: string, TYPE: string, METHOD: string, LICENSE: string, LINKCENSE: string, CITATION: string, THANKS: string, LINKS: null, PDBIDS: list<item: string>, FORCED_REFERENCES: null, REFERENCES: list<item: string>, INPUT_LIGANDS: null, LIGANDS: list<item: null>, LIGANDNAMES: null, PROTSEQ: list<item: string>, NUCLSEQ: list<item: null>, DOMAINS: list<item: string>, FRAMESTEP: double, TIMESTEP: int64, TEMP: int64, ENSEMBLE: string, FF: list<item: string>, WAT: string, BOXTYPE: string, SYSTATS: int64, SYSTRES: int64, PROTATS: int64, PROTRES: int64, NUCLATS: int64, NUCLRES: int64, LIPIATS: int64, LIPIRES: int64, CARBATS: int64, CARBRES: int64, SOLVATS: int64, SOLVRES: int64, COUNCAT: int64, COUNANI: int64, COUNION: int64, INTERACTIONS: list<item: struct<name: string, agent_1: string, agent_2: string, selection_1: string, selection_2: string, type: string>>, PBC_SELECTION: null, CHAINNAMES: null, MEMBRANES: null, CUSTOMS: null, ORIENTATION: null, PTM: list<item: null>, MULTIMERIC: null, COLLECTIONS: string, WARNINGS: list<item: null>, BOXSIZEX: double, BOXSIZEY: double, BOXSIZEZ: double, mdName: string, mdAtoms: int64, mdFrames: int64>
              mds: list<item: string>
              mdref: int64
              files: list<item: string>
              analyses: list<item: string>
              mdIndex: int64
              mdNumber: int64
              refframe: int64
              internalId: string
              creationDate: string
              identifier: string
              vs
              project_identifier: string
              accession: string
              published: bool
              md_index: int64
              md_name: string
              analyses: list<item: string>
              chains: list<item: null>
              metadata: struct<NAME: string, DESCRIPTION: string, AUTHORS: list<item: string>, GROUPS: list<item: string>, CONTACT: string, PROGRAM: string, VERSION: string, TYPE: string, METHOD: string, LICENSE: string, LINKCENSE: string, CITATION: string, THANKS: string, LINKS: null, PDBIDS: list<item: string>, FORCED_REFERENCES: null, REFERENCES: list<item: string>, INPUT_LIGANDS: null, LIGANDS: list<item: null>, LIGANDNAMES: null, PROTSEQ: list<item: string>, NUCLSEQ: list<item: null>, DOMAINS: list<item: string>, FRAMESTEP: double, TIMESTEP: int64, TEMP: int64, ENSEMBLE: string, FF: list<item: string>, WAT: string, BOXTYPE: string, SYSTATS: int64, SYSTRES: int64, PROTATS: int64, PROTRES: int64, NUCLATS: int64, NUCLRES: int64, LIPIATS: int64, LIPIRES: int64, CARBATS: int64, CARBRES: int64, SOLVATS: int64, SOLVRES: int64, COUNCAT: int64, COUNANI: int64, COUNION: int64, INTERACTIONS: list<item: struct<name: string, agent_1: string, agent_2: string, selection_1: string, selection_2: string, type: string>>, PBC_SELECTION: null, CHAINNAMES: null, MEMBRANES: null, CUSTOMS: null, ORIENTATION: null, PTM: list<item: null>, MULTIMERIC: null, COLLECTIONS: string, WARNINGS: list<item: null>, BOXSIZEX: double, BOXSIZEY: double, BOXSIZEZ: double, mdName: string, mdAtoms: int64, mdFrames: int64>
              files: list<item: struct<name: string, downloadUrl: string, length: int64, contentType: string, metadata: struct<project: string, md: int64, frames: int64, atoms: int64>>>