Annotator tutorial topics

From phenoscape
Revision as of 20:34, 29 November 2012 by Wasila (talk | contribs)

Agenda- topics and software for curator training: Overview of curation workflow (see Sandrine’s slides) and software involved

Ontology development:

Protege tutorial

Ontology development principles:

OBO foundry principles (orthogonality, single inheritance, versioning, etc...) Genus-differentia definitions

Online resources and mailing lists (bookmark)

Term trackers (PATO, RO, CARO, Uberon)

OBO Foundry

BioPortal

Mailing lists: Phenoscape-curators, obo-anatomy, obo-discuss

Curation training

EQ annotation - Review wiki Guide to Character Annotation

Phenex

Matrix and free text entry in Mesquite and/OR direct import into Phenex

Subversion and use of SmartSVN

Mendeley

Phenoscape Curation Log in Google Docs

Taxon lists update

Endnote and publication identifiers

Ontology editing and updating

SVN, SmartSVN

Term request workflow; proposed ORB workflow
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