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Error code: StreamingRowsError Exception: OSError Message: cannot find loader for this HDF5 file Traceback: Traceback (most recent call last): File "/src/services/worker/src/worker/utils.py", line 99, in get_rows_or_raise return get_rows( File "/src/libs/libcommon/src/libcommon/utils.py", line 272, in decorator return func(*args, **kwargs) File "/src/services/worker/src/worker/utils.py", line 77, in get_rows rows_plus_one = list(itertools.islice(ds, rows_max_number + 1)) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 2361, in __iter__ for key, example in ex_iterable: File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 1883, in __iter__ batch = formatter.format_batch(pa_table) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/formatting/formatting.py", line 471, in format_batch batch = self.python_features_decoder.decode_batch(batch) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/formatting/formatting.py", line 233, in decode_batch return self.features.decode_batch(batch, token_per_repo_id=self.token_per_repo_id) if self.features else batch File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/features.py", line 2142, in decode_batch [ File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/features.py", line 2143, in <listcomp> decode_nested_example(self[column_name], value, token_per_repo_id=token_per_repo_id) File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/features.py", line 1405, in decode_nested_example return schema.decode_example(obj, token_per_repo_id=token_per_repo_id) if obj is not None else None File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/features/image.py", line 189, in decode_example image.load() # to avoid "Too many open files" errors File "/src/services/worker/.venv/lib/python3.9/site-packages/PIL/ImageFile.py", line 366, in load raise OSError(msg) OSError: cannot find loader for this HDF5 file
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Dataset Card for SFEM Dataset
This dataset provides 3D finite element meshes with corresponding stress distributions under stochastic point elastic loading conditions, designed for training neural network surrogate models for the stochastic finite element method (SFEM).
Dataset Details
Dataset Description
This dataset enables researchers to develop graph neural networks that can predict stress distributions orders of magnitude faster than traditional SFEM simulations. It contains approximately 16,000 CAD geometries with corresponding finite element analysis results under various loading conditions.
- Curated by: Jessica Ezemba
- Language(s): English (documentation)
- License: MIT
Dataset Sources
- Repository: https://github.com/cmudrc/SFEM
- Paper: Neural Network Surrogate Modeling for Stochastic FEM using 3D Graph Representations: A Comparative Study (2025)
Uses
Direct Use
This dataset is intended for:
- Training graph neural networks for engineering design applications
- Developing surrogate models for finite element analysis
- Research in computational mechanics and machine learning
- Educational purposes in engineering simulation
Out-of-Scope Use
This dataset should not be used for:
- Safety-critical applications without proper validation
- Real-world structural analysis without engineering oversight
- Applications requiring non-linear material behavior
Dataset Structure
The dataset follows PyTorch Geometric conventions:
Dataset/
βββ Pytorch_Geometric_Files/
β βββ processed/
β β βββ pre_filter.pt # Preprocessing filters
β β βββ pre_transform.pt # Data transformations
β β βββ train_data.pt # Processed training data (~7GB)
β β βββ val_data.pt # Processed validation data (~1.2GB)
β βββ raw_train_data.tar.gz # Archived raw training files
β βββ raw_val_data.tar.gz # Archived raw validation files
βββ Step_Files/ # Original CAD geometries (3GB)
βββ 000/ # STEP files (subset 1)
βββ 001/ # STEP files (subset 2)
βββ 002/ # STEP files (subset 3)
Data Fields:
vertices
: 3D coordinates of mesh vertices (N Γ 3)von_mises_stress
: Stress values at each vertex (N Γ 1)displacement
: Nodal displacement vectors (N Γ 3)stress_tensor
: Full stress tensor components (N Γ 3 Γ 3)load_class
: Loading condition (small_Load, medium_Load, large_Load)fixed_facet_mask
: Boundary condition indicators
Data Splits:
- Training: 85% of geometries
- Validation: 15% of geometries (geometry-based split for proper generalization)
Dataset Creation
Curation Rationale
Traditional stochastic finite element methods require thousands of deterministic FEM evaluations, creating prohibitive computational costs. This dataset was created to enable neural network surrogates that can predict stress distributions in milliseconds rather than hours, supporting efficient iterative design exploration.
Source Data
Data Collection and Processing
- Geometry Source: CAD geometries generated using BrepGen
- Mesh Generation: Gmsh with Frontal-Delaunay algorithm for tetrahedral meshes
- FEM Software: FEniCSx (DOLFINx) for finite element analysis
- Material Properties: Linear elastic (E = 2.303 GPa, Ξ½ = 0.4002)
- Loading Conditions: Stochastic point loads (200N, 2000N, 20000N)
- Statistical Sampling: 50 realizations per geometry/load combination
Who are the source data producers?
The simulation data was generated using open-source computational tools:
- BrepGen for diverse CAD geometry creation
- Gmsh for robust mesh generation
- FEniCSx for finite element computations
Bias, Risks, and Limitations
Technical Limitations:
- Limited to linear elastic material behavior
- Point load conditions only (no distributed loads)
- Specific material properties (not representative of all materials)
- Mesh resolution optimized for efficiency over extreme accuracy
Potential Biases:
- Geometry distribution may not represent all engineering applications
- Loading scenarios focused on mechanical components
- Material properties reflect specific engineering domain
Recommendations
Users should:
- Validate neural network predictions against known analytical solutions
- Understand limitations when applying to safety-critical applications
- Consider appropriate safety factors when using surrogate models
- Acknowledge that computational efficiency comes with inherent approximations
Citation
BibTeX:
@dataset{ezemba2025sfem,
title={SFEM Dataset - Neural Network Surrogate Modeling for Stochastic FEM using 3D Graph Representations},
author={Ezemba, Jessica},
year={2025},
publisher={Journal of Mechanical Design},
}
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